Ladu010358.1
Basic Information
- Insect
- Ligdia adustata
- Gene Symbol
- -
- Assembly
- GCA_947049285.1
- Location
- CAMRIN010000274.1:996445-1018413[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.17 12 6.9 1.0 1 23 589 611 589 611 0.94 2 11 0.0014 0.096 13.6 4.6 1 23 624 646 624 646 0.98 3 11 0.00044 0.031 15.1 9.0 1 23 652 674 652 674 0.98 4 11 0.0025 0.18 12.7 3.6 1 23 681 703 681 703 0.98 5 11 0.00021 0.015 16.2 0.4 1 23 709 731 709 731 0.95 6 11 3.5e-08 2.5e-06 28.0 0.9 1 23 737 759 737 759 0.98 7 11 2.8e-05 0.002 18.9 1.3 1 23 765 788 765 788 0.96 8 11 2.7e-05 0.0019 18.9 3.3 1 23 794 817 794 817 0.96 9 11 0.0012 0.084 13.8 1.4 2 23 824 845 823 845 0.97 10 11 3.7e-05 0.0027 18.5 2.5 1 23 851 873 851 873 0.97 11 11 0.015 1.1 10.3 0.2 1 22 879 900 879 903 0.91
Sequence Information
- Coding Sequence
- ATGCAGTATGATTGCCTGGTGTGTGACACCTCTCTAGCGTACTCCAAAACTCCCATCAGGAATGTGTTCTCAGAGACAAATGTCCTACCAAACAGCAGTACACTGTTGGAAACTCTGCAAGATATCCTGAGCAAGACTTTGGATGAAAGTAACATACATTCAAAAAGCTTGTGTCAGGAATGTTACAAAACCTGCATTGATTACGATGGATACAAGTCTAAGATAAACACAATAAAAATGGTCATGTCTGAAGGATACAATAAGACTGTGAGTTCAGTAGATAAACCACCAAGTAATATATCAGTAGTACCAATAAGTAAACCAAAAAACACAATAGTTGTTCCAGCGTCCAAGCTTGTACCTATCCCGGCAGATTTCAAACTTAATTTTGGGAAATTGACTCAGGCGATGTCTAAAGCTAAGCCATTATCGTCGTTTAACTTTAAAGTGTCAGTAGGCTCCACCGCTGCAACGCAAACCACTTCAACTGTCAATGTCACCCAACCCGTTGACAGCTCGGCCGCAACTGTCTTGTCAACTGTCAGTAATGACATAACTAAAGAATGGGACGTCAATGTGGTACCTAAAGAGATATTTTCAGTGGTCGATGATGACAGTCAGAATGTCACTGATGATGATAATGATGCGCCGGTGACGGAAAACGGTGATGAGGAGGAAAATCAGATGGAGATTGATGAAGATTGCAGCATGGCCATAGTGCCTATTAAATCTGAAGGCCAAAATATTGATGATATAAAAAGTGAACAGCAGCTGTCAGATTACACAGACATCATAACCCTGACGGAGACAGACTCGGGGCAGGACAGTGGGAGCTATTTGCTCAGCAACCTCAAGATGTACCACTCGCAACGGACTGACGATGATGATGATGAACATACAATAGTAGTGAATAGTGAGGATGGGTCGATACTGGAGATGGTGAGCGGCCAGCAGGTTATATACCAGAACGGAGAACTGTCGCTCGTGGTGGGGGACCGCGGGGGGGACACCGCCGGGGGACAGGGAGAGCAGGGGGAAGGTAAGCAGGTTATATACCAGAACGGAGAACTGTCGCTCGTGGTGGGGGACCGCGGGGGACAGGGAGAAACGGAGAACTGTCGCTCGTGGTGGGGGACCGCGGGGGGGACACCGCCGGGGGACAGGGAGAGCAGGGGGAAGGTAAGCAGGTTATATACCAGAACGGAGAACTGTCGCTCGTGGTGGGGGACCGCGGGGGACAGGGAGAGTAGGGGGGAAGGTAAGCAGGTTATATACCAGAACGGAGAACTGTCGCTCGTGGTGGGGGACCGCGGGGGGGACACCGCCGGGGGACAGGGAGAGCAGGGGGAAGGTAAGCAGGTTATATACCAGAACGGAGAACTGTCGCTCGTGGTGGGGGACCGCGGGGGACACACCGCGGGGGACAGGGAGAGTAGGGGGGAAGTTTCAGATTCAAACGACGAGTCACAGATCGAGCTGCAAGTGTCTGGTGACGAGGAAACCGCTAACGCCATCATAGCAGCCGCACAAGAACAAGGAGGTGCATTCATAAAAGTGGAGTCTGGTGAGATGTACCGAGTGAAGTCGGTTGAGAGCGCTTCCTCTGTGACGCAACAGTATGACGTGGACAGTCTCGTCACCAGCCACGGCTCCCTCTACACATGCAACCTGTGCGCACATGCAGGGAGAGAGGATGAAGAGAAGAACCTTCTAGAAGCCGAGGCGATGATGCAGCATCTGAAGACAGTACATCTCGCCACGTTATACCTGTGCAAGTTCTGCGGACGAGGGATGAGGAAGCGGAACGAATATAACAAGCATTTAGCGGAACACAGTGAGAAGCAAACATCTAAGTCTACAAAACGTCCCCACACGTGTTCAGTATGCGGCAAGAGTTACAACTGTAGCACGTTACTGCGCGAACACATGAACACGCACACTGGCGCACGCACGCACACGTGCACCACCTGTGACAAGCACTTCGCCACTAAGTACACATACCACGCGCATATGAAGACTCACCAGGTCCGTCCCCGTCCGTTCCGCTGTGGGGAATGCAACAAGTGCTTCCTCTCGGTACAGAATCTGAAACAACATGAAAAGACTCACACTGGCGTCAAGGACTTCATCTGTAAAGTTTGCTATAAAGCGTTCGGCACACAGCACAATTTAGAGATCCACGGTATAGTTCACTCTAAGGAACGACCCTTCGTTTGTAACTACTGCGGGAAAGGGTTCTCTAGGAAGGCTGACCTTAACGACCATCGACGGACGCATACAGGCGAGAGACCGTTCGAGTGCGACATGTGCGGCGCTCGGTTCGCGCAACGCTCCAACCTGCACTCGCACAAACGCGCCACACATCTCGACGACAAACGACACAAGTGTACAGACTGTCCCAAACGATTCAAACGGAGAAGATTGTTAGAATACCACATAAAGGCGACGCACACTGGCGAGCGACCGCTCAAGTGCGAAGTTTGTTCATCTACGTTCGTGTACCCCGAGCATTACAAGAAACATGTCAAGATACATACAGGAGTGCGCCCTTACTTCTGTGAGATATGCGGCAAGTCGTTCAATTCCCGCGACAACCGCAACACCCATCGCTTCACTCACAGCGAGAAGAAACCGTACGAGTGTCTCGCGTGCGGTAACTCTTACATGAGAAAACGAACACTCATACAACATATGAACGAGAGCGGTCACTTGGCTGAATCGATAGTGGTGAATCAGCCGCGAGTCACAAGAGTGCATAAAGATGATTCCGGAATGACAAAGTTAGTAGAGATGGAAACTGAACAAGAGAATCAAACTGGAGACAGTAAAGTCGAAGCTGTGTTCCACACGTCGGGTAAACTAGAAGCTTTGGACAATCCAGCGTCCATTACTAAAATAATAGCTGACGACGAAGGAAAGTTCTTTATAGAAAGTGAATGTATCGAGCAGGTCGACGAGAGCGCGCTCTTGGAAGTGGTCGACACTAACGGAGTACAAATATATCAAAACGAACAGACATGTCAGGACGAGAACGGTTCTGTTCTACGACTCATTCAAGTGAAGCTGCCGAACGGGACCGACGGATGGGTCGCTTTGAACGATTAA
- Protein Sequence
- MQYDCLVCDTSLAYSKTPIRNVFSETNVLPNSSTLLETLQDILSKTLDESNIHSKSLCQECYKTCIDYDGYKSKINTIKMVMSEGYNKTVSSVDKPPSNISVVPISKPKNTIVVPASKLVPIPADFKLNFGKLTQAMSKAKPLSSFNFKVSVGSTAATQTTSTVNVTQPVDSSAATVLSTVSNDITKEWDVNVVPKEIFSVVDDDSQNVTDDDNDAPVTENGDEEENQMEIDEDCSMAIVPIKSEGQNIDDIKSEQQLSDYTDIITLTETDSGQDSGSYLLSNLKMYHSQRTDDDDDEHTIVVNSEDGSILEMVSGQQVIYQNGELSLVVGDRGGDTAGGQGEQGEGKQVIYQNGELSLVVGDRGGQGETENCRSWWGTAGGTPPGDRESRGKVSRLYTRTENCRSWWGTAGDRESRGEGKQVIYQNGELSLVVGDRGGDTAGGQGEQGEGKQVIYQNGELSLVVGDRGGHTAGDRESRGEVSDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMYRVKSVESASSVTQQYDVDSLVTSHGSLYTCNLCAHAGREDEEKNLLEAEAMMQHLKTVHLATLYLCKFCGRGMRKRNEYNKHLAEHSEKQTSKSTKRPHTCSVCGKSYNCSTLLREHMNTHTGARTHTCTTCDKHFATKYTYHAHMKTHQVRPRPFRCGECNKCFLSVQNLKQHEKTHTGVKDFICKVCYKAFGTQHNLEIHGIVHSKERPFVCNYCGKGFSRKADLNDHRRTHTGERPFECDMCGARFAQRSNLHSHKRATHLDDKRHKCTDCPKRFKRRRLLEYHIKATHTGERPLKCEVCSSTFVYPEHYKKHVKIHTGVRPYFCEICGKSFNSRDNRNTHRFTHSEKKPYECLACGNSYMRKRTLIQHMNESGHLAESIVVNQPRVTRVHKDDSGMTKLVEMETEQENQTGDSKVEAVFHTSGKLEALDNPASITKIIADDEGKFFIESECIEQVDESALLEVVDTNGVQIYQNEQTCQDENGSVLRLIQVKLPNGTDGWVALND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -