Ladu008419.1
Basic Information
- Insect
- Ligdia adustata
- Gene Symbol
- -
- Assembly
- GCA_947049285.1
- Location
- CAMRIN010000213.1:521173-527282[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0014 0.1 13.5 1.9 1 23 290 313 290 313 0.94 2 11 2.3 1.6e+02 3.4 4.1 1 19 325 343 325 347 0.91 3 11 4.5e-06 0.00032 21.4 0.2 2 23 353 374 352 374 0.97 4 11 0.0002 0.014 16.2 1.0 1 23 378 401 378 401 0.98 5 11 9.4e-06 0.00067 20.4 1.1 2 23 594 615 593 615 0.95 6 11 0.14 10 7.2 0.1 3 23 636 657 634 657 0.94 7 11 1.8e-06 0.00013 22.6 4.2 1 23 663 685 663 685 0.98 8 11 0.00024 0.017 15.9 0.9 1 23 690 712 690 712 0.98 9 11 1.2e-05 0.00087 20.0 5.1 2 23 719 741 718 741 0.97 10 11 5.3 3.8e+02 2.3 1.6 1 19 747 765 747 766 0.83 11 11 0.00045 0.032 15.1 0.5 3 23 779 800 777 800 0.91
Sequence Information
- Coding Sequence
- ATGGCCACTATCAATATCACTACGTGCCTCGGTGACGGTTTTCCATTGGTTATTTTGCCGAAACAGAGTACAGCGTCCGGCTTGCAAGAGTCCATGGATATGGATGTGAAAATCACTGCTCTTTACATGGAAGGCAAAAAGATATGTTTATATACAGGATGGTGCCATGTGAAACTGGTGGATGGTGCCGGTATTGTAGATGGTGAATGTGATCAAAACTCGTCCTTGGATACCACTGATATAGTAGGCAATATAGACATAGATCGAATGCCTATTATTTTAGCTGATAGCACCCATACACAGTTACCTTCCAATAACCTGTCACCAAGGTGGAGTGATCCATTCGATCCCTATACGTACAGCCTGTTTGATACAGACTTACAGAATACATACACTGTCCCTGAAGAGTTAACCGGTGGAATAACGGTTCAGCATCACAACACCTACATCACTCAAAATATTTACAAATCAGCACCTCAACCACAGTCTCCTATACACTTTGAGGAGAGGGAATACAGAAATGTGGTCAAATCTAAGGGGGGTGAAAACTTGTACGAAGAAGATTCAGAAAGCGAGCAGTTACTCTCGGACATTGCTAAAAAAATTCGGATAAGGAATAAGAAGAAGCAGAATAGTAACGTTGTAGTCAATAGCAAGAATGAAGCTCTAAAACAGCTTATGTCCACCAACACACAGCCCGCGTCTAAGCAGAGAAAGACTATTTTGTTTCTGGGCAACAATTCTTCTTCGGGGCAGACCATCCAGAACATATCGTACAGTGACCCACAGATCCAGTGTTCAGAAATTCAAGTAGACCATGAGGTTGTTATTGAAGATTCTCCATCACCCGCAACGCAGAGAAAAAAATATCAATGCGACAAATGCAAGCAGATATTCGACAAAATCTCCTCGTTCCGTCAACACATGACCGGCAAGCATACATACTCCAAGAAGAAGAAGGACAACAAAAGTTACCACTGCTCAGAATGCGGCAGGAACATAAAAAGCTACAACAAGTACAGAGCTCATTGCCTAGGACACGGCGACCCGGACTTACAATGCCCTACGTGCTCCAAAGTCTACGCCTCGAATGCTAGTCTCAAAATACATATGAAGATACATAATAGGAAGTACCAGTGCTCATATTGCACAAGATCGTACGAAGTGGACTCATCCTACAAAATCCATATGAGAAACGCACACTCGAAATTCTTGTGCGAACACGAGGGATGCAGTTTCATGGGCAATTCGGAGACTGAGCTTTCCCTACATCTCGAAGATCATAACTCCAATCGCAATGGCATCACTGATCAAAATGGTAATGATCAGAGTGATCGCAATTTTGAGATTTATGACGATCAAAATAATCACAAAACTGACCGATATTACGAAGGCGATCAGTATTATCAGGATGATCACAACGACATCAATCGTGATCAAAATTATCAAGACGTTCGCAATAATTTTGATGATCATAACTATCGTGATGATCTCAATAACAATGTTGATCTGGTTGACGATATCTATGAGGAAATGATCGAGGACGACCTTTTTCTTAATAAATATAGTGAAAGAGACGCAGTCCAAGGCGAGCGAGATATAGAAAACTCTTTTACTGTTAATGATAATGTGAAAGGAGATGACTTTTCAGTGGCGAGCGAAGATGCTGCGGATTGCGAAAGGATGATAGAGCCGGACTCCGTCATCGCTAAGGTCATGTCCGATAAGATGTTCCTAATGAACCCTAAAAACGCGAAAAAACATGGCAGGCATAACAAGAGTTGCCAGGATTGCAGCAAGACGTTCGACCGCCTCAGCGACCTGAAGCGGCACCTCATCGAGCACGTCATCAAGTCCTCGCTCGCGAAAACTGTCAGCAGTGCGCAGGGGTTCTTCAACATCATCTGTGAAATTTGCCAAACGGCGTCGTTCAGTTCTGTGGACAAGTACAAAGCGCACCTCCGCGAACACGCCAAGTTGACCATTTACCAATGTACGTTTTGCAACAAGTCTTTCAGCGACTCTAGCAACTTCTCCAAGCACAAGAAGATCCACGGCGTCTCTAACTACCAATGCGATCTTTGCAACAGGAAATTCAACTCCAAAATAATGATCGCCAGGCACATGGAGTATCACAACAAGAATAAACCACTCAAGTGCAACATATGCAATCGCACCTTCCATTTCAAATCGATGCTCAACAAGCATATGAAGACTTCTCACATGCAAAAATCTTCGTACTCTTGTCGTTTCTGTGACGGCACTTTCAAGAACTTCAAATCGAAATGGGATCACGAGTGGGAGGTTCATAACATTAGGAAGAAGGCTATCGATTGTAAAATGTGTAACGCGCAGTTTAGAAAGAACTCTGATCTCAAAAAGCATTACATTGATGTACACTATGTGTACACTCGGAAATTGAAGGATTCGAACAAAAGAACCGCTATGAAGGCTGCTCTTTAA
- Protein Sequence
- MATINITTCLGDGFPLVILPKQSTASGLQESMDMDVKITALYMEGKKICLYTGWCHVKLVDGAGIVDGECDQNSSLDTTDIVGNIDIDRMPIILADSTHTQLPSNNLSPRWSDPFDPYTYSLFDTDLQNTYTVPEELTGGITVQHHNTYITQNIYKSAPQPQSPIHFEEREYRNVVKSKGGENLYEEDSESEQLLSDIAKKIRIRNKKKQNSNVVVNSKNEALKQLMSTNTQPASKQRKTILFLGNNSSSGQTIQNISYSDPQIQCSEIQVDHEVVIEDSPSPATQRKKYQCDKCKQIFDKISSFRQHMTGKHTYSKKKKDNKSYHCSECGRNIKSYNKYRAHCLGHGDPDLQCPTCSKVYASNASLKIHMKIHNRKYQCSYCTRSYEVDSSYKIHMRNAHSKFLCEHEGCSFMGNSETELSLHLEDHNSNRNGITDQNGNDQSDRNFEIYDDQNNHKTDRYYEGDQYYQDDHNDINRDQNYQDVRNNFDDHNYRDDLNNNVDLVDDIYEEMIEDDLFLNKYSERDAVQGERDIENSFTVNDNVKGDDFSVASEDAADCERMIEPDSVIAKVMSDKMFLMNPKNAKKHGRHNKSCQDCSKTFDRLSDLKRHLIEHVIKSSLAKTVSSAQGFFNIICEICQTASFSSVDKYKAHLREHAKLTIYQCTFCNKSFSDSSNFSKHKKIHGVSNYQCDLCNRKFNSKIMIARHMEYHNKNKPLKCNICNRTFHFKSMLNKHMKTSHMQKSSYSCRFCDGTFKNFKSKWDHEWEVHNIRKKAIDCKMCNAQFRKNSDLKKHYIDVHYVYTRKLKDSNKRTAMKAAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -