Ladu002697.1
Basic Information
- Insect
- Ligdia adustata
- Gene Symbol
- ZFX
- Assembly
- GCA_947049285.1
- Location
- CAMRIN010000060.1:419317-428757[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.5 1.1e+02 4.0 0.3 2 23 6 27 5 27 0.96 2 14 0.029 2 9.4 0.0 1 23 1034 1057 1034 1057 0.93 3 14 3.3 2.4e+02 2.9 0.4 1 23 1130 1152 1130 1152 0.93 4 14 1.4e-05 0.00098 19.8 2.8 2 23 1155 1176 1154 1176 0.97 5 14 0.00015 0.01 16.6 2.7 1 23 1182 1204 1182 1204 0.98 6 14 0.00018 0.013 16.3 3.2 2 23 1211 1232 1210 1233 0.95 7 14 5.5 3.9e+02 2.2 0.7 5 23 1246 1264 1245 1264 0.95 8 14 0.0073 0.52 11.3 2.4 3 23 1271 1292 1270 1292 0.97 9 14 0.033 2.3 9.2 0.1 2 23 1309 1329 1308 1329 0.96 10 14 4.1e-05 0.0029 18.4 0.6 1 20 1335 1354 1335 1357 0.92 11 14 0.0023 0.17 12.8 0.5 1 23 1365 1387 1365 1387 0.98 12 14 0.0056 0.39 11.6 7.2 1 23 1393 1415 1393 1415 0.98 13 14 6.8e-06 0.00048 20.8 0.8 1 23 1421 1445 1421 1445 0.97 14 14 0.001 0.072 14.0 5.1 1 23 1451 1473 1451 1474 0.95
Sequence Information
- Coding Sequence
- ATGGATCAGCTGGTACAATGCCCCGTGTGCACCCTCTTCTTGCACAATGGAATGTCTTTGGAGTCGCATCTGGACACGCATCCCAAAGACCAAGTCATAAAAGCTTTATGTAGTATAGCAAACAGAAACAACAGCTGTGCCAGCAGTAGGACATCCACTCCTGTTAACTCTGAGAGGTCTTACAGGAGCAGGTCTCGGACCCCTGCCGCAGAGGACACAGGACGATGGAATAATGCTCATAGAACTGGTGACCATGATCGCTACTGGGCACGGACACCCAGCGGGAATTCAAGTAGAGCCCAGAGCAGGACACCTAGCAGAACTCCGAGCCGTAACCAGAGCAGAACTCCACGGTCTACATCATCAGCTACAGTTTCCAGGAATTGCACCCCTGACTTCAGGAGTATAGATAATAATCCTTATGAAACCACAACGGTCAGTAATTCACCGCCGAATTCAAACCATTCCAGTTCAAATCTTATCAATTCTCCATTGGCGATGAAGGCTGATAAAATGCAGCAAGCATACGCTCCAACTATGATGTCAGACGATGATCAGAAATACATGTTCTGCCCCGAACTACACGAAGATAGAGAGATTAAATATTCTCGCAGTGCAGAGTACAATGCTATGGATGTTAATAATGTGTTTTCTTACAATGTGCCAACAATGGGTTCAGCCGGAGTTAAACTACAACCCAATGTGATATCTAGTATGGAGAGGAAAAAAAATGAACCTGTTAAAATCATGCCTAAATCTAATAATTTACTGAATTTAGTCAAAAGTAACATTGGGGGAATGCAGTATTTGGCATCGGGTGTTAAGCCTATGCATGTGGTAGTAAGTCCTTCAGCTCCCGCTTTTGTTCAGAAGAATGTGCAAAACAGTATGATAATGACAGGTGCACTACCAAATTCACAGGTGCACAGAGATACCAAAACTGCTCCTCCTTTAGTTCAAAACCACTTTAACCAGCTCAGTTCCGGTACATTCACTCCAGGGACGACTGTAGTCACTCAGAATTCACAATATTTTTACCAGGAAATGGTGCAGAACATAGATCCGAAGAGCTTCATTCCGAGCTTGCCTACAGTGTTTGCAGGGCAGGAGAATGTCACCAATGTTGCCCAAACTAGCTCAATATACCAAAATGTGATGCTGGTTGATCAGTTTGGCAACACTTCGTGCATGTACACCACGCCTCAGCAAATGATTTCTAAGCAATGTGTACCTCAAACATTCGCGGATACAAGTGCAATTGTGAGTAATCCTCAAAAACAGAGTCAGAGTTTGTCGGATCAGAATAAGACTCTTGTTATTGAAGTGAGTCCTATCATTCCTACAACACAAATAAGTTCCTGTAATAGTACAGCTAGTAAAGTACTTTCTCGTCCGCCTCGACAAGTGTCTGCAATTGTTTCCAACTTCACTTTACCCAAAGCAGAAGCCCCAAATGTTACGATCACTGAAAAGGTAGAAACTCCAAGTGAACTCCCCGGGACCACTAGGGGCTTAAAAATTCTAAGCAATATAAAGGTTGAAGTTCCAGTACAACATACCAAGAATATGATAAATACTGTGATGGATCTAACGGGGTCTACTGACTATCCAGAAAGGTCACTGTCACCCGAGAAAATTTTGCCAGATATTGAAAACCTTGAGCAGAAGGCTACTCAGAACTTTACACAGCCATCCACGAGTAGAGCTGACTGTTCTAGGGAAAGCGCTATCTCATTTGCAGAGTTGAAAAAGATTGGAAGTCCTACCTCAAACAAAGACTCTAACAAAACTAATAGCATAGATACCAAAATGGACATGGAGTTTAGTGACAGTTGTCCCGTTCCAGATTTAATATGCAACGAGAAGCCATCAATATCACCAATCAGCGAGCTTTCTGAGAGCGGTGACAACTCCACTGACCACACTGTCATTTTGCCCAAACCGGAAACTAGTAAAATTAGTATTGAATTAGTTAGTAAAGAAGACAAGAAAATTCATTTGCCAATAAAACCATTTAGAAGTACTCCACTAAGACTGAATAACATTTTCGTGAAGAAATGCAAGAAGGTTTTACAGATAAAGAATTTGAAGAGCAACAGTGATGCAGGTACGAATAAACAAGAAGAGGATCCATCAGCATGTGCATCTACGAGCACAGCTCCCGTGAGCTTCACTAACCAAGTTCAAAAGACTGAAACTAAGCAAAAGTCTATACTGACAACAATATCCATCGAAGAGATTAAAGGTAAAGATGAAGTGGCGGGGTTTGAAGCAGAGCAATCGGATGACATCGCTCAATACACTAGCCCGGAAAAGTCGAACTCTACATCAGAAATGGTCCATGTAAAAGAGGAGTTTAGCTCGAGCAATGAGAACACGTTTAGCAACCAAAGCCAGCCTGACGAGATCCAGCCGCTAGACCCGCTGCGACCGACTTCGATCAACGTCGTCACTTACGGCAACATGTCGCCCACGGACTTCGACGAAGAATCCAGCAATAGAGAGCTGTTAGACTTGGAAGGCGCGACGAAGACCAAACAATTCGTCAACATGATGAACGAAAACTACTTCGGGGATAACATATACGAGCATTACTTCACGCCCGACCGAGTGGAGGCGTTCGACGACAAAGGACCGACGGTGTTCAAAGACAACGCGAAGGAAGCGTTCTCTTGCAACATCTGGGGCGAGCCGTCCACTAAAGAGAATGAGTTCGTGTTGCCGAATTTCATACACGAGAGTTATAAAATTGCGGAGAGTGGGATGGATTATGCCGAGGGGGACAGGGACGAAGCGATAGCGGATGAGGAGAGGGAGAGAGACTGCAAGGCTGATCTGTTGAGCGAGAGTCGAAGCGACGGGGAACCGACGCTCAATATTTGTGCTAACGAGAGAATGCCGCCGAGAGGGGAACTCAGTGGCCAGGAGAGCAATGGCGATATGGATTCCTCTTGGAATGGGACGTATTCTGAAGCGGCGCCAGCAGAGCCCTACGACCTGATGGCGCGAGAGAGCTGGGTGTCCGACGGCTCCGAGCTCGACGTCACAGAGAAACGAGATAACTTGGAGGAGCTGGTGGTATTCCCTCCGACGCGTCAATACACGTGCGGTTCGTGCGGCGCTCCGTTCCCCAGCGTGAAGGATCTGCGCGTGCACAGTGCGCGCGCGCACCCCCCCGCCTGTTCCTCCTACTCGCGGATATCGGCCAGCATCAAGCAGGAGGACAAGTGTGAGGACAATGCCATCTCGTGCGCAGTGAACCTGATGTCCCTGGACTCCAAAGAGACGATAACGTCCAGCATCCTGCAGTACTCGGGGCTGGACGCCAGCGCGCCCACACTCGAGCTGCACCTACTCAAGCAGGAGACCAAGAGGAAACGGAGAGACTTTGTCTGTCCCACTTGTAAAGTGGACCAGGTGACGGACGCGGCGTTCCACGTGCACCTGCGCACGCACCCGCTGGAGTGCCTCAAGTGCGGCAAGTGCTTCATGCGGCGCGCCAACCTCACGCTGCACCTCAAGACTCACGCGGGGATCAAGAACTACAAATGCGAGATCTGCGAGAAGCGGTTCGTGACGCGACAGAAGCTGTCGGAGCACCACAACATACACACGGGCCGCGCGCCCGTCAAGTGCTCGCTGTGCGACGAGACCTTCCGTCGGTACTCGAACATGGTGCAGCACAGGAACCGCCATCACTTCCACAAGCGGGCTCCGGTCCGCGACTACGTGTGTCAGTGTGGTCTCGTGCTCCACTCGCGAGCCAAGTTGGCGTGGCATCGGGAAACGCACGACCCGCGACCTAAAGCGTGCATGCACTGCCCGGACAAGTTCGTGCACGCAGCGTCCCTCACCAGGCACATACGCAGGAAGCACAACAACCTGTACATGACGGCGCCGTCTGTCTCCAAAGCGGAGAACGTGCCCTGTCCTATATGTAAACAGATCTACCTCCGCACGAACCTGCGTGCGCATCTGCAGATCCACAGCGGCAAGCGTCCCTACTCGTGCGTCATCTGCAACAAAACGTTCGCCACCAAATGGAACCTCAAGATCCACCGCTGGACCCACGTGTCCCGCTCCGCGAAACCGTTCAAATGCGCGCTCTGCAAAGGCGCCTTCATACGAAGAACCGAATACATTTCGCACATGAACTCCCACAAGTCCGTCCGACCGTACACCTGCAACTACTGCGGCTGTCAGTTCATAAGGAAGTACAACTGCCAACGTCACGTGAGGGAACACGAGACGGCCAAGAAGTACGTGTGCGAGGTGCCGGAGTGCGGTAAGTCCTTTCATAGGAGTTATTACTTGTCAGAGCATATGAAGGTGCACAGCGGAGCGAGGCCGTTCTCTTGCAATATATGCGGGAAGACTTCCAGTAACAAGAGCAATCACAATAAACATGTCAAGATACATCACGCTAGGGAATCTGTCGCTACCGAGACGTAG
- Protein Sequence
- MDQLVQCPVCTLFLHNGMSLESHLDTHPKDQVIKALCSIANRNNSCASSRTSTPVNSERSYRSRSRTPAAEDTGRWNNAHRTGDHDRYWARTPSGNSSRAQSRTPSRTPSRNQSRTPRSTSSATVSRNCTPDFRSIDNNPYETTTVSNSPPNSNHSSSNLINSPLAMKADKMQQAYAPTMMSDDDQKYMFCPELHEDREIKYSRSAEYNAMDVNNVFSYNVPTMGSAGVKLQPNVISSMERKKNEPVKIMPKSNNLLNLVKSNIGGMQYLASGVKPMHVVVSPSAPAFVQKNVQNSMIMTGALPNSQVHRDTKTAPPLVQNHFNQLSSGTFTPGTTVVTQNSQYFYQEMVQNIDPKSFIPSLPTVFAGQENVTNVAQTSSIYQNVMLVDQFGNTSCMYTTPQQMISKQCVPQTFADTSAIVSNPQKQSQSLSDQNKTLVIEVSPIIPTTQISSCNSTASKVLSRPPRQVSAIVSNFTLPKAEAPNVTITEKVETPSELPGTTRGLKILSNIKVEVPVQHTKNMINTVMDLTGSTDYPERSLSPEKILPDIENLEQKATQNFTQPSTSRADCSRESAISFAELKKIGSPTSNKDSNKTNSIDTKMDMEFSDSCPVPDLICNEKPSISPISELSESGDNSTDHTVILPKPETSKISIELVSKEDKKIHLPIKPFRSTPLRLNNIFVKKCKKVLQIKNLKSNSDAGTNKQEEDPSACASTSTAPVSFTNQVQKTETKQKSILTTISIEEIKGKDEVAGFEAEQSDDIAQYTSPEKSNSTSEMVHVKEEFSSSNENTFSNQSQPDEIQPLDPLRPTSINVVTYGNMSPTDFDEESSNRELLDLEGATKTKQFVNMMNENYFGDNIYEHYFTPDRVEAFDDKGPTVFKDNAKEAFSCNIWGEPSTKENEFVLPNFIHESYKIAESGMDYAEGDRDEAIADEERERDCKADLLSESRSDGEPTLNICANERMPPRGELSGQESNGDMDSSWNGTYSEAAPAEPYDLMARESWVSDGSELDVTEKRDNLEELVVFPPTRQYTCGSCGAPFPSVKDLRVHSARAHPPACSSYSRISASIKQEDKCEDNAISCAVNLMSLDSKETITSSILQYSGLDASAPTLELHLLKQETKRKRRDFVCPTCKVDQVTDAAFHVHLRTHPLECLKCGKCFMRRANLTLHLKTHAGIKNYKCEICEKRFVTRQKLSEHHNIHTGRAPVKCSLCDETFRRYSNMVQHRNRHHFHKRAPVRDYVCQCGLVLHSRAKLAWHRETHDPRPKACMHCPDKFVHAASLTRHIRRKHNNLYMTAPSVSKAENVPCPICKQIYLRTNLRAHLQIHSGKRPYSCVICNKTFATKWNLKIHRWTHVSRSAKPFKCALCKGAFIRRTEYISHMNSHKSVRPYTCNYCGCQFIRKYNCQRHVREHETAKKYVCEVPECGKSFHRSYYLSEHMKVHSGARPFSCNICGKTSSNKSNHNKHVKIHHARESVATET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00143318;
- 90% Identity
- -
- 80% Identity
- -