Ladu010017.1
Basic Information
- Insect
- Ligdia adustata
- Gene Symbol
- -
- Assembly
- GCA_947049285.1
- Location
- CAMRIN010000262.1:553871-571674[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.003 0.21 12.5 1.4 1 23 294 316 294 316 0.97 2 12 0.00098 0.069 14.0 0.5 2 23 324 345 323 345 0.92 3 12 0.51 36 5.5 0.5 1 23 349 371 349 371 0.97 4 12 0.0004 0.029 15.2 0.5 1 23 376 399 376 399 0.98 5 12 0.0019 0.13 13.1 0.4 1 23 403 426 403 426 0.93 6 12 0.013 0.94 10.5 0.1 3 21 444 462 443 467 0.91 7 12 0.00082 0.058 14.3 0.3 3 23 477 498 477 498 0.96 8 12 0.83 59 4.8 3.1 1 23 517 540 517 540 0.93 9 12 7.7e-06 0.00055 20.6 1.2 1 23 551 573 551 573 0.99 10 12 1.5e-07 1.1e-05 26.0 1.8 1 23 579 601 579 601 0.99 11 12 0.19 14 6.8 3.8 1 23 607 629 607 629 0.98 12 12 4.6e-05 0.0033 18.2 0.2 1 23 635 658 635 658 0.98
Sequence Information
- Coding Sequence
- ATGGAGTTTTTAATTGTTGAAGATAGTAATGTGAGAGCTTGTAGAGTATGTCTAGTTATGGATGTGAAGATGTATAATCTGCAGAGTTACCCTATGGTAACCTACTTTGAAGCTGTTATTGGTATACCTGTTTTAAGTACCATGTTGCTGCCTCCTTTCTTATGCTATGAGTGTGCTGCTCTTGTGAAAAAATTCTCCATGTTTAAAGATCGCTGCCTTCAAGGACAAGCTACATTGTTTAGCATATTGGACAGAGCTGGAAAGATAACAGAGAAAGACATATTGCTGGTAGATAAAAAGAGTGTTCTTACAAGCTCAACATTGACTGTGTGCAACACCAGTAAAGAGGAAGTTGTCTGCCACTCGGAAGTTAGTTATCAAGACAAGGTTAAATATGAACCTGGTGTGGTGCTTGGAAATGATCCAGAAGTAACAATAGAAGTAAAAGAAGAAGTTGACCTTGACTTCCCTCTCACCGACTTCCACCAATCAAGTGATGACGAACCGCTCTCTGTACACAAGACTGCTAAGTCGGAGAATAAGAGAGGAAAGAAAAGAGGTCGGAAAAAGAAGATAGCAGAAGATGAATCTAGTTTAGTGGAAAAACTGCCGTTTCAAGATAATGAGACAGGCACAGAGGCTCACAACCAGGCTGTGATACGTGCGCCTCGCAAGAAGGGTCGTCCAAGAAAGAGTCCTACTGCCGAGCTCGCCCCAGTGACGTCAGCACCCGCGCCACGCCGCACTAAGAACACGGGCGGCGTCACCACTGATGACATCAATCTGGAGGATTACGTCACTATCATTACACTCACGTTAAAAGAACAAATGGATGAAATCACGAAGAGGAAGGAGTCCAGCAACTATTTGAACGCACCTTTCCAATGCAATCTCTGCTTTAAAGGATTTGTTGACACTAACGCATGGAAACACCATATTGGGAAACACGACCCGAGCGCGGGTCCGGTGGAGTGCGAGGTGTGCAAGTTTCGGTTCTCGTCTCGTCGCGCGCTCCAGAAGCACGCCGTCAACCACGAGAAGAAGTACGCGTGCAAGGCGTGCGCGTACGTCTCTAAAACCACGACTCAAGCGCGGCAGCACCAACGTTGGCATAAAGGAGTCACCTACACATGTGAATACTGCGATGAAGTTTCCACTAAATGGACGTCGTACCTGTCGCACGTGCGCATCAAGCACCCCTCGCAGCACATATGCGGCGTGTGCGGGTACTCGTTCGTGAGCCAGCTCGGACTCACCATGCACAAGACTATGATGCATAAGGACGTGACAGAGACGTCGGAAGGCAGGGAGGAGCAGTCGGGCCCGTACTGCGCAGAGTGCGACGTGAAGTTTGTCTCCACAGAGGCGTACAACAGACACATGGTCACCTCCGTCAAACACTCCGACGAGAACAACTTCAGCAAAGGTTGTCGCGTGTGCGGCGCAACGTTCCCCTCCCCGGAGGAGCTGCGGCTGCACCACCGAGCGTCACACGCGCGCTCCCGGCCCAGGAACTACGGCAAGAAGACCAGTCAGGAACAGTGGCCGCACACCTGTCAGCATTGCGGTGAGATGGTAGCGAACGCGCGCGAGCACTGGACGCACTTCCGCCGCGCGCACCCCGACCAGCCCTACCCTGTGCAGAAGAACTACGTGTGCGACGTCTGCGGGAAACGATTCAGAGGCAACGCGTTCCTCAAGTATCACAAACGCACGCACACGTCCGAGCGTGCGTACAAATGTCCTACGTGCGACAAGGCTTTCTTCAACCGAACCAACCTGAACATGCACCTGCGAACGCACTCCGCCGCGCGGCCCTACCCGTGCGACGTGTGCTGCAAGGCGTTCAAATGTAAGGGCGCGTTGGACAGGCACTACCGGAGTCACACAGGCGTAAAGCCTTACGAATGCGAAGTGTGTGGCAAAGCTTTCGGTCAGTCCAACAGCCGCAAGCTGCACGTACGGACCGTGCATTTAAAACAACCCGCGCCGTACCTGCACCGAGCGAGACAGGAGAAACGCAAGCCGCCGCCTGAGAAACTTTCTGTGGAACATCCCTTTGTGTACTAA
- Protein Sequence
- MEFLIVEDSNVRACRVCLVMDVKMYNLQSYPMVTYFEAVIGIPVLSTMLLPPFLCYECAALVKKFSMFKDRCLQGQATLFSILDRAGKITEKDILLVDKKSVLTSSTLTVCNTSKEEVVCHSEVSYQDKVKYEPGVVLGNDPEVTIEVKEEVDLDFPLTDFHQSSDDEPLSVHKTAKSENKRGKKRGRKKKIAEDESSLVEKLPFQDNETGTEAHNQAVIRAPRKKGRPRKSPTAELAPVTSAPAPRRTKNTGGVTTDDINLEDYVTIITLTLKEQMDEITKRKESSNYLNAPFQCNLCFKGFVDTNAWKHHIGKHDPSAGPVECEVCKFRFSSRRALQKHAVNHEKKYACKACAYVSKTTTQARQHQRWHKGVTYTCEYCDEVSTKWTSYLSHVRIKHPSQHICGVCGYSFVSQLGLTMHKTMMHKDVTETSEGREEQSGPYCAECDVKFVSTEAYNRHMVTSVKHSDENNFSKGCRVCGATFPSPEELRLHHRASHARSRPRNYGKKTSQEQWPHTCQHCGEMVANAREHWTHFRRAHPDQPYPVQKNYVCDVCGKRFRGNAFLKYHKRTHTSERAYKCPTCDKAFFNRTNLNMHLRTHSAARPYPCDVCCKAFKCKGALDRHYRSHTGVKPYECEVCGKAFGQSNSRKLHVRTVHLKQPAPYLHRARQEKRKPPPEKLSVEHPFVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -