Ladu014834.1
Basic Information
- Insect
- Ligdia adustata
- Gene Symbol
- -
- Assembly
- GCA_947049285.1
- Location
- CAMRIN010000420.1:268807-283073[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0011 0.076 13.9 0.8 3 23 281 301 280 301 0.98 2 14 6.8 4.8e+02 1.9 3.3 2 23 342 364 341 364 0.94 3 14 2.4e-06 0.00017 22.2 0.4 2 23 387 408 387 408 0.97 4 14 0.0003 0.022 15.6 0.6 1 23 414 437 414 437 0.97 5 14 0.18 13 6.9 0.9 1 23 443 465 443 465 0.92 6 14 0.00036 0.026 15.4 0.1 1 23 471 493 471 493 0.96 7 14 4.6 3.3e+02 2.5 0.1 1 10 499 508 499 511 0.82 8 14 0.14 10 7.2 1.7 1 23 628 650 628 650 0.97 9 14 0.0018 0.13 13.2 0.4 2 23 657 679 656 679 0.92 10 14 5.2e-06 0.00037 21.2 1.1 3 23 687 707 686 707 0.98 11 14 2.1e-06 0.00015 22.4 0.9 1 23 713 735 713 735 0.98 12 14 0.0042 0.3 12.0 0.0 1 23 741 763 741 763 0.96 13 14 0.1 7.1 7.7 0.7 1 23 769 791 769 791 0.93 14 14 0.0077 0.54 11.2 2.6 1 23 797 820 797 820 0.95
Sequence Information
- Coding Sequence
- ATGAATATTACCACAGAACAAGTGTTCCTAGTGAATCCCGCTGAGTTAGAACAGCAGCATCATACACCGGCATCCTTGCAGCGAACTTTTACCATGCCCGTGGCCACGATGCATCCCGAAGATCCCCAGACTAGCGGCATCTGTCTTCCTCAGTCAGGCATGGATCTTCCATCTGGCACTCACATGTGCCGGCTGTGTGCCACTGTCACGGAGATGGTAGTGCCTATCTTCGAGGGAGAGGGACTTCAGAATAACCTTGCAGATAAGATACATCAGCATTTGCCTATACAAGTATCGGAGGGTGACGTGCTGCCGGTAGTGATGTGCTTCCAGTGCACGAGCACGCTGCTGGCGTGGCACGAGCTGGTGGCGTGCGCCGTGCAGGCTGACCACGCCATGAGGGAGAGGTTCCGTCTGCCGCCTCAGGGAACTAAGCAACAGCAGCAGCCCACTGTTCAGTCTAGTCAAACTCAAATCAAAGACGAAAAGTACCATGAACTAGTTAAACTCATAAAAACCATGGTAGAGGAGTATCTCCGCTTTATAAACATGGATGATGAAGTGATGTTAGTTTGTCAGAGATGCGACACACAACCCGCATTCACTTCCACGGACTTCGCTGATCATCTTATTTCTCAACACGAATCAGCAGTCTCCAACAAAGACGCTATCGATTCCTTTATAAAAGAAAATGTTATATTTGAAGAGCAACTCATATCCGATTTGGAATCAAATAGAGATAACGACTCTGATGGCGGAGAGATAACAGAAACGCCTAAAGATAAGGCTTTACCTTTTCAACTCGAGACTCCAAAGCCAAAAACTTTGCCCACCTTACTCTGTCCATATTGCGATAGTGCTTTTTCATCCCCGACTCGACTAATCCACCACCTCAGCAAACACTTAGAAATTTCCATAGAAGATGGGCTCGAATGCTGTGAAGTCATCTACGAAACTAAGAAAGACTACGTCTCCCATCTGCAAGATAAGCACGTCAGCAGACGAGTTATCGAACCGAAAACCATGTGCAAGAGTTGCAACTTTATAGCCGGTACGGAAACTCAGCTGAAGCACCACGTCGAGACCTGTCACCAGGAAATAGAACAAGTGAAGAAACCCCAGAAGACGAGCGACAAGAACCAGCACTGGATCCCCGCGGTTTGTCCCGACTGCAACCAAACATTCTCCAACAAATACAACATGTTAGCGCACTGGAAGACACACGCACACACGAAGGCTTTCAAGTGTGACAGATGCGAGAACGAGTACAGCAGCAAGGGGAACCTGACGCAGCACGTGAGACTCGTACACGAGGGGCAGTTACCGCACGCTTGCACCTCCTGCGGGGAGAAGTTCGCTACGAGAACCGCACGCGACGTACACTCCCGCCTGCACACCGGCGCCAAGCCCTACAGATGCGAGATATGCGACGTCGCCTTCCGTGCCAAGAACACGCTGCTGCGACATCTCGATGGACATCTCGATATACGAAAGCACGCGTGCGACATCTGCAACAAGACGAGCGACACACTTCCGGCGCACTCGGACGACCCCGACCCGGGCGGAGGAGACGGCGCCGCCACCGACGACTCGGACGAGCGCCCGCTCGCGACTATCCGCACACTTCGACAGAGACACTATCTCGTCTTCTACGACGCGCTCGTCAAGTTTCGGGACCACATCGCCGCCGAACACGCGCCGGAAAAATCCGAGCCGAATTCTAGTGCCGAAGAGAGCGGAGTGAACGGAGAGAACCGCGAGTCCGGCGCGGACGCGTACGACGACCTGTCAGGACGTAACCTGCGTCGGTCGCGGCTCGAGCCGAGCGCGCGCGCCGAGCTAGCGGCCTCGCGCGAGCGCGCCGCCGACGGGCGCCTCGTGTACCGCTGCCGACAGTGCGACAAGGTGCTGAGCGCCGCGCACACGCTGCTGTTCCACCGGCGGATCCACTCGGGCGAGCGGCCGTGTGTATGCCACGTGTGCGGCGCACAGTTCCGCGCGCCCGCCGGCCTGCAGCGACACCTGGCCGAGACGCACGAGCGCCGCCGCCGCCGCGCCTGCCGCCTCTGCTCCAGGACCTTCGCAAACGCGCAGAACTTGAAGCAGCACATGCGAACGCACACTGGCGAGCGACCCTACGAATGTTCACAGTGCGGGAAGAGATTCGCCCAGAGCGGGTCGCTGCACGCGCACCGAGCGACGCACGTAGAGTCCCGTCCCTTCGCGTGCGGTCAGTGCGGCGCTGCGTTCCGTTTGCGCGCCGGCCTGTCCCGGCACGCGCTACGTCACTCGGGCGAACGTCCCCACGCGTGCGGTACGTGCGCGCGCGCATTTCGCACGCGGCACGAGGCGGCGGCGCACCGGCTCGCACACGAGGACGCGCGGCCGCACGCGTGCGCGCTCTGCCCCGCCACATTCCGTCTGCGCCGCGCGCTCAGGCACCACTACCGGAGGCTCCACGAGTGCGACGCGCCGACACACACGCAGGGACCGCCGCCACCGCCTCACATGGAAACCCTCACAACACAATATTAG
- Protein Sequence
- MNITTEQVFLVNPAELEQQHHTPASLQRTFTMPVATMHPEDPQTSGICLPQSGMDLPSGTHMCRLCATVTEMVVPIFEGEGLQNNLADKIHQHLPIQVSEGDVLPVVMCFQCTSTLLAWHELVACAVQADHAMRERFRLPPQGTKQQQQPTVQSSQTQIKDEKYHELVKLIKTMVEEYLRFINMDDEVMLVCQRCDTQPAFTSTDFADHLISQHESAVSNKDAIDSFIKENVIFEEQLISDLESNRDNDSDGGEITETPKDKALPFQLETPKPKTLPTLLCPYCDSAFSSPTRLIHHLSKHLEISIEDGLECCEVIYETKKDYVSHLQDKHVSRRVIEPKTMCKSCNFIAGTETQLKHHVETCHQEIEQVKKPQKTSDKNQHWIPAVCPDCNQTFSNKYNMLAHWKTHAHTKAFKCDRCENEYSSKGNLTQHVRLVHEGQLPHACTSCGEKFATRTARDVHSRLHTGAKPYRCEICDVAFRAKNTLLRHLDGHLDIRKHACDICNKTSDTLPAHSDDPDPGGGDGAATDDSDERPLATIRTLRQRHYLVFYDALVKFRDHIAAEHAPEKSEPNSSAEESGVNGENRESGADAYDDLSGRNLRRSRLEPSARAELAASRERAADGRLVYRCRQCDKVLSAAHTLLFHRRIHSGERPCVCHVCGAQFRAPAGLQRHLAETHERRRRRACRLCSRTFANAQNLKQHMRTHTGERPYECSQCGKRFAQSGSLHAHRATHVESRPFACGQCGAAFRLRAGLSRHALRHSGERPHACGTCARAFRTRHEAAAHRLAHEDARPHACALCPATFRLRRALRHHYRRLHECDAPTHTQGPPPPPHMETLTTQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -