Ladu004459.1
Basic Information
- Insect
- Ligdia adustata
- Gene Symbol
- -
- Assembly
- GCA_947049285.1
- Location
- CAMRIN010000105.1:1255633-1262039[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 3.6 2.5e+02 2.8 2.0 2 23 28 50 27 50 0.93 2 24 1 73 4.5 0.1 2 23 75 97 74 97 0.92 3 24 0.00028 0.02 15.7 1.1 2 21 146 165 145 166 0.93 4 24 0.0021 0.15 13.0 0.8 1 23 202 225 202 225 0.94 5 24 7.3e-07 5.2e-05 23.9 0.3 1 23 232 255 232 255 0.94 6 24 2.1 1.5e+02 3.5 1.4 2 23 343 365 342 365 0.95 7 24 0.0048 0.34 11.9 0.2 3 23 393 413 391 413 0.96 8 24 0.0017 0.12 13.2 1.1 1 23 417 440 417 440 0.97 9 24 0.75 53 4.9 0.3 3 21 446 464 445 465 0.92 10 24 0.017 1.2 10.1 0.6 3 22 474 493 472 495 0.89 11 24 0.00088 0.062 14.2 1.9 1 23 502 525 502 525 0.95 12 24 0.032 2.3 9.3 1.8 3 23 532 552 531 552 0.91 13 24 1.5 1.1e+02 4.0 3.2 3 23 606 627 605 627 0.93 14 24 8.5 6e+02 1.6 0.2 2 23 652 674 651 674 0.87 15 24 0.003 0.21 12.5 0.1 2 23 698 719 697 719 0.96 16 24 0.00092 0.065 14.1 0.5 1 21 723 743 723 744 0.96 17 24 0.21 15 6.7 1.2 1 23 785 808 785 808 0.97 18 24 0.25 18 6.4 0.3 2 23 834 856 833 856 0.95 19 24 0.0019 0.13 13.1 0.3 2 23 880 901 879 901 0.94 20 24 0.0028 0.2 12.6 0.0 1 23 905 928 905 928 0.97 21 24 0.21 15 6.7 0.4 1 23 932 955 932 955 0.97 22 24 5.1 3.7e+02 2.3 0.3 1 23 960 985 960 985 0.87 23 24 0.00022 0.016 16.1 3.0 1 23 994 1017 994 1017 0.97 24 24 0.00053 0.037 14.9 0.4 1 23 1027 1050 1027 1050 0.96
Sequence Information
- Coding Sequence
- ATGTCCATGGCGAGAGCGAACGCGTGCACGATTGTTGAATATTCCACGGCGTATCCGTTTAGACTTCCAGACAGCTCTATAATGTGCGTGTACTGCTGCGAGTCGTATCAGGACGCGGAATGTTTCCGTCAACACATGCAAGCGGACCATCGGGAGTACAAGGCACAGCACGCATTCTCACACATCAACGCCGGATATCTTAAAGTAGACATCACAGACTTGCGTTGTCGCGTTTGCAACGATGTTTTCCGCAATCTCCAAGATATCGCCCTCCATTTAAAAGACGCGCACCAATTACCCATCGACACTGAGCACGAAATCGGTCTGCTGCCTTTCCGCATGGAAAAAGATAGACTATCGTGTCCGATTTGCGAGAAAAAGGAGGGAATAATGCGGGCATTAAGCAGACACGTGCAGAGCCATTTCTTTCAATGCATATGTGAGCATTGCGGTAAAGTATACGCGTCGAGTGGATCTCTCATCCACCACGTGAAATACAGTTGCGTCAAGTCCAACGCTGAAAAGAAGACCCGATGCAGGAAATGCAAAACTTTCGTGACAAGCCTCGAAGAACACTTAAAAGTGTCTAAAGCTTGTCATCAACACATTTGCAGTGTTTGCGGCGAGAGATTTGGTTACTGGAAAGATAAACAGAACCACATGAACGAGAGCCACGGTGTGCCCATCAGGACTTACAAATGCCCGGAGTGTGAGATGGTTTTTAAAACGTCTAGCAATCTAAAAGCACATTATGTTATAACTCACACGGATGATTACTTGTCTTGCGACGAAGCCCGCATAATGGCGAAACAGAACGCAGAAGTTGTCTTACAGTTGTCGACGGTGTATCCGTTCAGATTGCAAGGTACAAAGATCATTTGTGTCTACTGCTGTGAAGAATTCGAAGAGCCGGACCCGTTTAGAAGTCACGTTGACGAAAAACACACTAAGATAAATCTGTACACAGCCTTTGCGCATGTCATAGACAGATACAAAGGCTACCTTAAAGTAGATTGCTACAATCTCAAATGTCGGCTATGTTCCATGCCATGCAAATCTATTGACAGTGTTGCTCAGCATCTAAAACAGACCCATACTGGCAAACTAATCGACAGGCTGAATCTAAATTACGAAATCGCCGTGCATCCGTACAATTTGATAAAAGACAAGTGGAATTGCGTTGTTTGTGGCAAAAAACTGCCCAGTCTCAACAAACTGGGAAGACATATGTCTACGCATTATTCTGAGTACATTTGTGATACTTGCGGCAGATGTTATTTGTCAGCTGATAGTCTCAAATATCACATCAAAATAAGCCATACAGAGAAAAACATGTGCCGAAAGTGCTGGAAAGATTTCCCTACACTTGAGGATAGGAAAGAACACGTAAAAAATTCAATGAAATGTTGGCCTTTCGGGTGTGTGTATTGCGGTGCCAGATTTACGTCATGGGAAAATAAACATAAGCACCTGGTCGCTATGCATCAGGTTAGACAGAGGACGTATCCCTGTCCGGATTGTGATCAAGAATTTCAAAGTCGAAAACATTTTTATAACCATTACACGGTAGAGCACACTCAGGAATCCCTTTTGTGTACGTGTTGTGGAAAAACGTTTCCTAATCAGAATTCGCTTTACGATCATAAGCTCGGTCATTCGGGGGTCGTGTTGGAAATAGGCGGACGTAGTGACAATGAAAGTGATTCCAAAAAGAAAATTGTTCTTGTATGCCAGACGCCACAGCGGCGAAATGCCGAACTCATTCTGAGATACTCCACTGCTTACCCTTTCAAAACGCGTTTCAGTCAAATCCTTTGCGCATTCTGCCACGAGGAACATAATACTCTGTCAGATCTAAGAAATCACATGAAACAGGACCATATAAATTCAGACTTTAAAAACGTTTTCTATAGGACCAAGGATAATTTAATCAAAGTAGATATAACCGATATGAAATGCAAAATTTGTTCCTTGGAAGTTTTAGATATAGATACATTAATGACTCATTTATCACGGGAACATCAGAAACCTGTAAAGTTTAATGCTCGTTTTGGCGTGTTGCCTTACAAACAGAACGTAGAAAATCAGTGGGTTTGTGTGTACTGTCAGCGGATGTTTGCGGAATTCGTTGCGTTCAAACGTCATATAGCCACACACTTTATGCAGTTCACGTGCGACAAGTGTGGAACTAGTTTTGTGTCTGATCAGGCTCTTAACGACCACCATCGACAAGTTAAATGCTTTAGAACAGCGTACAACCCTCGTAACGGCAAGGTCATGAGGTCTCGGAGCAACGCCGAAATTATTCTCCAATGTTCCACCGTCTGCCCATTTAGAACATGGATGAATAATTTCAGTTGTGTGTTTTGTCGCTTTCAGTCTTATGATCCTAACACTTTGAGAATACACGTGAGAACACGGCACGCCAACTACGAAGTGCAGGCCGCGTTTTACAAAAAACTAGGAAAAGACTTTTTAAATATAGATATAACCGATCTGCAATGCAAACTATGTTTCATGCCTGTACCCACTTTCGATACATTAACGTATCATCTGAAAAACGATCACCAGCAGCCCATCAACTTTGACGTGCAATTTGGTGTCTTACCGTTCAGATTGAACGATGGATCAAGTTGGAAGTGTACGATATGCCCGAACGTATTCAAAGATTTCATCTCTCTAAAGAAGCATACGGCAGATCATTTTCAGAATTACGTCTGTGATGCTTGCGGTGAAGGTTTCATTACGGAATCTGCTATGATTGCTCACACAAAGATACCTCATGAGAATAAATACAACTGTAATCGGTGCATCGCCACCTTTTCTTCATTGGACGAGCGGAATGCTCACGTCAAGACTCAGCATACTGCTACTCCATACATGTGCATGTATTGTACTGACAAACCACGATTCGCCAACTGGGAACTGCGCAAGAGACATTTAATGGAAGTACATAACTATAAAACCGGCGCTGATAAATACGAATGTACTACATGCCAAAAGACATTCAAAACTAGATCTGGCAAATTCAATCACATGGCGAGAACCCATAGAATGAAAAAAGATACAGAACTAAATTATCCATGTCCTAGTTGCCCCAAAGCATTTACAACTAAGTTGTTTTTAGACAAACATTTGGCTAAGAAACATTTTAATTTGTAA
- Protein Sequence
- MSMARANACTIVEYSTAYPFRLPDSSIMCVYCCESYQDAECFRQHMQADHREYKAQHAFSHINAGYLKVDITDLRCRVCNDVFRNLQDIALHLKDAHQLPIDTEHEIGLLPFRMEKDRLSCPICEKKEGIMRALSRHVQSHFFQCICEHCGKVYASSGSLIHHVKYSCVKSNAEKKTRCRKCKTFVTSLEEHLKVSKACHQHICSVCGERFGYWKDKQNHMNESHGVPIRTYKCPECEMVFKTSSNLKAHYVITHTDDYLSCDEARIMAKQNAEVVLQLSTVYPFRLQGTKIICVYCCEEFEEPDPFRSHVDEKHTKINLYTAFAHVIDRYKGYLKVDCYNLKCRLCSMPCKSIDSVAQHLKQTHTGKLIDRLNLNYEIAVHPYNLIKDKWNCVVCGKKLPSLNKLGRHMSTHYSEYICDTCGRCYLSADSLKYHIKISHTEKNMCRKCWKDFPTLEDRKEHVKNSMKCWPFGCVYCGARFTSWENKHKHLVAMHQVRQRTYPCPDCDQEFQSRKHFYNHYTVEHTQESLLCTCCGKTFPNQNSLYDHKLGHSGVVLEIGGRSDNESDSKKKIVLVCQTPQRRNAELILRYSTAYPFKTRFSQILCAFCHEEHNTLSDLRNHMKQDHINSDFKNVFYRTKDNLIKVDITDMKCKICSLEVLDIDTLMTHLSREHQKPVKFNARFGVLPYKQNVENQWVCVYCQRMFAEFVAFKRHIATHFMQFTCDKCGTSFVSDQALNDHHRQVKCFRTAYNPRNGKVMRSRSNAEIILQCSTVCPFRTWMNNFSCVFCRFQSYDPNTLRIHVRTRHANYEVQAAFYKKLGKDFLNIDITDLQCKLCFMPVPTFDTLTYHLKNDHQQPINFDVQFGVLPFRLNDGSSWKCTICPNVFKDFISLKKHTADHFQNYVCDACGEGFITESAMIAHTKIPHENKYNCNRCIATFSSLDERNAHVKTQHTATPYMCMYCTDKPRFANWELRKRHLMEVHNYKTGADKYECTTCQKTFKTRSGKFNHMARTHRMKKDTELNYPCPSCPKAFTTKLFLDKHLAKKHFNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -