Basic Information

Insect: Ligdia adustata
Gene Symbol: -
Assembly: GCA_947049285.1
Location: CAMRIN010000029.1:1257981-1259801[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.46 33 5.6 1.8 2 23 177 199 176 199 0.90

2 10 0.027 1.9 9.5 0.4 1 23 205 228 205 228 0.95

3 10 8.6e-07 6.1e-05 23.6 1.7 1 23 234 256 234 256 0.97

4 10 3.8e-07 2.7e-05 24.7 4.9 1 23 262 284 262 284 0.99

5 10 1.7e-05 0.0012 19.5 0.1 1 23 290 312 290 312 0.97

6 10 0.0014 0.1 13.5 0.6 1 23 318 340 318 340 0.95

7 10 6.9e-05 0.0049 17.6 1.0 2 23 432 454 431 454 0.95

8 10 0.00015 0.011 16.6 2.1 1 23 460 482 460 482 0.95

9 10 1.5e-05 0.0011 19.7 3.1 1 23 488 510 488 510 0.97

10 10 0.0015 0.1 13.5 0.0 3 23 519 539 517 539 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.46	33	5.6	1.8	2	23	177	199	176	199	0.90
2	10	0.027	1.9	9.5	0.4	1	23	205	228	205	228	0.95
3	10	8.6e-07	6.1e-05	23.6	1.7	1	23	234	256	234	256	0.97
4	10	3.8e-07	2.7e-05	24.7	4.9	1	23	262	284	262	284	0.99
5	10	1.7e-05	0.0012	19.5	0.1	1	23	290	312	290	312	0.97
6	10	0.0014	0.1	13.5	0.6	1	23	318	340	318	340	0.95
7	10	6.9e-05	0.0049	17.6	1.0	2	23	432	454	431	454	0.95
8	10	0.00015	0.011	16.6	2.1	1	23	460	482	460	482	0.95
9	10	1.5e-05	0.0011	19.7	3.1	1	23	488	510	488	510	0.97
10	10	0.0015	0.1	13.5	0.0	3	23	519	539	517	539	0.92

Sequence Information

Coding Sequence: ATGGAAGATTCCTACATCATCGCCAATTTCCACGCGCTATGTCGCCTATGCTTGAACAAAAGTGCTCTATCTGTGTCTATATACGGGGCGGCGCCTGATGACGAGGCCAACATATCACTAACCTCTAAAATCTCAGAGTGTTTCGAACTCCAAATTGATCCCAATGATGGCCTGCCAGGAAAAATCTGCTACAAATGCTTGTTTAAAGTGGACAAGTGCTCTAAATTCAGATTGCAATGCATCCAAAATGAAAACAGGCTGAGACAGATTACAAGTAGAGTTAATGAGCTAGACAACTCTAATTCATCAGAGTTGAGCAATTACAACTTTACCAATGGCCAGGAACAGAAACCGAAGCCTGAAGATTATATTGTGGAAGACAGTGTAGTCATGGTTGTCGACCCTAGCCTTGACTATGACTCTTCAGAGGAATCAGAGAGCATGGAACCCACTGAGCAAGAAACAACTGAACAAGACCACACACCTGAGGGAGAACCCATGTCAGAGTCATTCTTTAAAAATGTTTCCATGTGCCAGTACTGTGACCAAGCCTTCATTTCAGAAGAAAAATGCAAAGATCATGAACAAAAGTACCATGACCCACACTTACCTTACAAATGTATTGAATGTAGCTTAGTGTTTGCAGAACGTTCCCAGTATATACAGCACACAAAACAAGTGCATGGCAATGATAAACCATACCAGTGCCCTGAATGTGAGAAATGCTTTGGTCGGCGATCTGATTTAAGGAAGCATTCCATTGTCCACACAGGTATCAGACCCTATCAATGCCACTATTGTTTGAAAAGTTTCTCTCGTAATACTAACTTGAGTAAACATCTTCGTATACATGCAGGGCATAAACCTCACGTGTGCCCATTGTGTCCGAGGAGCTTTGTAGCTAAAGGGGACCTTCAACGTCATGTTTTAGTACATTCTGGCATGAAGCCTTATGCTTGCCGAAAATGTCCTCTTACTTTTGGAAGAAGAGATAAACTTCTTAAGCATGAAGTTAGACATGGCCCAATTAGCCCAGAAAGGAAAAACGAATATGAAGATGAACAAGAAATGAATGACATGGTAGTTAATGTCAATCCATTCAGCAATATACTGACGTCACCATCTGACCATCAGGGGTCTAATGACTATGAACTGCCCAGAATACCTGATCACATATCTGGGGAAAGTAGTTTTAATAGAGTACAGAAGAATCAGGGAAATTCAGGGAAACAAATTCAGACATCACCACAAAAAACAAAGCAAGCACTTAACAAAAATCGCCCTAAAAACATTAAGTGTCATCAGTGCCCGAAAAGGTTTTCATCTTTAGATGCTTACAAAACTCATGTGTCTATAGCCCACATGGGGTCAAGAGTATTTCAGTGCAAAGTGTGCTTTAAGAAGTTTGTGAGGAAAAGAGACCTTGATCGTCATGCAACCCTGCATTCAGGGATGAAGCCTTTTTCCTGCAGTCAATGTGATAAAAAGTTCACCAGAAAAGATAAACTGGACAAACATGAGCAAAGTCATGAATGTTTGGTTGTGAATATGCCTTGTATTGAGTGTGGTGCAACATTTGAGAAGAAAGCTGATCTGGTTGCTCATATTAAATCCCATTTCACTGATAATTTTGATGAAAAAGCAAATGAAATTAAAAAAGAAGATGAACCAGAGTTTCCTTTAGATGATAGCTTCTATGACATGGAAACCTGA
Protein Sequence: MEDSYIIANFHALCRLCLNKSALSVSIYGAAPDDEANISLTSKISECFELQIDPNDGLPGKICYKCLFKVDKCSKFRLQCIQNENRLRQITSRVNELDNSNSSELSNYNFTNGQEQKPKPEDYIVEDSVVMVVDPSLDYDSSEESESMEPTEQETTEQDHTPEGEPMSESFFKNVSMCQYCDQAFISEEKCKDHEQKYHDPHLPYKCIECSLVFAERSQYIQHTKQVHGNDKPYQCPECEKCFGRRSDLRKHSIVHTGIRPYQCHYCLKSFSRNTNLSKHLRIHAGHKPHVCPLCPRSFVAKGDLQRHVLVHSGMKPYACRKCPLTFGRRDKLLKHEVRHGPISPERKNEYEDEQEMNDMVVNVNPFSNILTSPSDHQGSNDYELPRIPDHISGESSFNRVQKNQGNSGKQIQTSPQKTKQALNKNRPKNIKCHQCPKRFSSLDAYKTHVSIAHMGSRVFQCKVCFKKFVRKRDLDRHATLHSGMKPFSCSQCDKKFTRKDKLDKHEQSHECLVVNMPCIECGATFEKKADLVAHIKSHFTDNFDEKANEIKKEDEPEFPLDDSFYDMET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00318316;
90% Identity: iTF_00033150;
80% Identity: -