Ladu011029.1
Basic Information
- Insect
- Ligdia adustata
- Gene Symbol
- salm
- Assembly
- GCA_947049285.1
- Location
- CAMRIN010000297.1:176190-180279[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.2 3e+02 2.6 4.2 2 23 173 194 172 194 0.96 2 13 0.00072 0.051 14.4 3.0 1 23 200 222 200 222 0.97 3 13 0.02 1.4 9.9 0.1 2 23 247 268 246 268 0.96 4 13 4.3e-06 0.00031 21.4 0.3 1 23 274 297 274 297 0.95 5 13 4.1e-05 0.0029 18.4 1.0 1 23 306 328 306 328 0.98 6 13 2.4e-05 0.0017 19.1 2.8 1 23 334 356 334 356 0.99 7 13 2e-05 0.0014 19.3 1.5 1 23 362 384 362 384 0.98 8 13 0.0001 0.0074 17.1 7.4 1 23 390 412 390 412 0.97 9 13 0.00059 0.042 14.7 0.0 1 23 418 441 418 441 0.97 10 13 0.68 48 5.1 1.6 3 23 448 465 447 465 0.83 11 13 0.00023 0.017 16.0 5.9 1 23 471 494 471 494 0.95 12 13 0.024 1.7 9.6 0.7 1 23 500 525 500 525 0.91 13 13 0.0003 0.022 15.6 1.5 1 23 531 554 531 554 0.96
Sequence Information
- Coding Sequence
- ATGGAGCTGAAGATATGTCGCGTTTGCCTCGAGCGCAGCGCCACGACTTCCGTGTTCGACGGGGAGGACAACGCCGGCGTGCGATATTGCACTAAAATGATGAAGTGTGTTGCTGTAGTGGTCGTGCAAGGAGACGGTTTGCCGGACGGTATATGCGGCCGCTGTGCTGACGAGCTTGAGGTGAGCTACGCGTTCGCAATGCGGTGCGAGGCCTCAGACCTGGCGCTCCGCTCGCTCCACGGCACCGCGCCTGCGCCCAGCCCATTGCACCAACTACCAGCCCTAATAAAACAAGAAATGAAACCAGAAAACGAAATTTCCTCTCAAGATATTGATCAGTTTGAAACCTTCTTTGACAATGATGATTGGATGATGTCTTCAGTTAGTGATCATTCAACAATAAAAATTAAAAAACTTAAGACATGTAAGAGTAAAACTGCTAGTTATAAACACAATAGGAGATTGTTGCCAGGTTACTTGCGCTTGAGGAGACTGAGACTCAAAACGGGCCCTATTCAGTGTCCGGTGTGCGAGCGCACCCTGCCCTGTCACTCGGCCTTCGAATGCCACATGAGAACACACACTAAAGAGAAACCATACACTTGTGACCTTTGTAAAAAATCTTATTCAACTAAACATATATTGAAAAAGCATGTGATGGCACATTACGGGATGAAAGAAGAGAGGAAAGTGAAACCTTCAGATGGCAGGTCACACCGTCCGAAAATGGGACCGCTGCAGTGCACCATCTGCGGTCGTATGATGAAGAGCAAGGGAGCTATGGACATCCACCTGTTGTCTCACTCTATGGAAAGGCCTTTTGCATGTGAAATATGCGGAGCCAAGTATAAACAGAAAGGAGCATTGAAGCGTCACATGAAGGGCAGACACCCAGAGCTGCACCCTCACTCCTCCTTTGTATGTGAGCACTGCGGCAAGACATTTCGTGAGCGATCCATCATCATCAACCACATGCGTATCCACACGGGGGACAAGCCATACAAGTGTACATTCTGTGCGGAGAGATTCACTCAGTACTCCTCGCTGGCTCGGCACACACGACGTCACACCGGAGAGAGACCCTTCAGCTGCAACATCTGCAGCAAGACCTTCCGGGAGCGAGGAGTCCTGCGGAGGCACCTCACCACACACAGCACCGAGAGGAAATACTGTTGTCACATTTGCAACAAGACTTTCAAAGGCGAGCACAACTTGCGCATGCATATCAAACTGCATACCATTGAAAAGAGGTTTGTTTGCACAATCTGTGGCCTGGCCATGGCTATGAAGGGCAATCTGAGGATTCACATGATGAGGATGCACTCGGAAAAGTCGGGGATATGTCCGGTGTGTCACAAGCACTTCGGAGACATGGAGGCTCACATGGTGTCCCACACAGGGGAGAAGCCCCACAAGTGCAAGATCTGCGATCAGAGCTATGCAACCAAGCGCAGTCTCTCACACCATATGAACTTCAAGCACAAGAACACCGGGAAGTTCAAGTGCACTGTTGACAACTGCCACAAAACATTCCCAACAGCGCCGATGTTAGAGTTCCACGTGCTCAAAGCGCACACGCACAGCACGCCGTACGTGTGCAGCCATTGCTCCCGCGGCTTCCTGCGCCCCTCGGACCTCTCGCGCCATCTCAAGCTGAACCACAACGACACTCACACGGAGGTGCGCGCGAGACCAGTCTGCGTCAGCAAGTTCTTTATTGCACCCTCTTCCTGTCGGCTGGTCGGTCGGTCGGGGGCAGACAAACCTGTCGGCGGTCCCTATGAAACTCAACAGCGCGGAGATCCGCAGGCGGTTCCCGAGGCGCCCTCTTCCAAGGCCTACGATACCACCTCACCAGGGCCGGCAGGTGAGGCTCGGCCGGCGGCGGAGGACGTTAGCCCGCGACCGCGCGCCAGCACGCACGTCTGCCGCGCGCCGCCCGCGTACCCTCGCGATACGTCATGTTGA
- Protein Sequence
- MELKICRVCLERSATTSVFDGEDNAGVRYCTKMMKCVAVVVVQGDGLPDGICGRCADELEVSYAFAMRCEASDLALRSLHGTAPAPSPLHQLPALIKQEMKPENEISSQDIDQFETFFDNDDWMMSSVSDHSTIKIKKLKTCKSKTASYKHNRRLLPGYLRLRRLRLKTGPIQCPVCERTLPCHSAFECHMRTHTKEKPYTCDLCKKSYSTKHILKKHVMAHYGMKEERKVKPSDGRSHRPKMGPLQCTICGRMMKSKGAMDIHLLSHSMERPFACEICGAKYKQKGALKRHMKGRHPELHPHSSFVCEHCGKTFRERSIIINHMRIHTGDKPYKCTFCAERFTQYSSLARHTRRHTGERPFSCNICSKTFRERGVLRRHLTTHSTERKYCCHICNKTFKGEHNLRMHIKLHTIEKRFVCTICGLAMAMKGNLRIHMMRMHSEKSGICPVCHKHFGDMEAHMVSHTGEKPHKCKICDQSYATKRSLSHHMNFKHKNTGKFKCTVDNCHKTFPTAPMLEFHVLKAHTHSTPYVCSHCSRGFLRPSDLSRHLKLNHNDTHTEVRARPVCVSKFFIAPSSCRLVGRSGADKPVGGPYETQQRGDPQAVPEAPSSKAYDTTSPGPAGEARPAAEDVSPRPRASTHVCRAPPAYPRDTSC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00896438;
- 90% Identity
- iTF_00896438;
- 80% Identity
- iTF_00896438;