Ladu016139.1
Basic Information
- Insect
- Ligdia adustata
- Gene Symbol
- -
- Assembly
- GCA_947049285.1
- Location
- CAMRIN010000471.1:623688-625505[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.8e-07 4.8e-05 24.0 1.6 2 23 112 134 111 134 0.93 2 13 0.0097 0.69 10.9 0.4 2 23 141 163 140 163 0.95 3 13 0.001 0.072 14.0 1.6 2 23 170 192 169 192 0.93 4 13 8.3e-07 5.9e-05 23.7 0.6 2 23 200 222 199 222 0.96 5 13 2.3e-05 0.0016 19.2 1.1 1 23 228 251 228 251 0.96 6 13 0.0028 0.2 12.6 2.0 1 23 258 281 258 281 0.97 7 13 4.8e-06 0.00034 21.3 3.0 2 23 287 309 287 309 0.96 8 13 0.0012 0.085 13.7 3.0 1 23 325 348 325 348 0.96 9 13 0.18 13 6.9 0.5 5 23 361 380 358 380 0.92 10 13 1.5e-06 0.00011 22.8 0.5 3 23 387 408 386 408 0.96 11 13 0.19 14 6.8 3.4 2 23 416 438 415 438 0.90 12 13 2e-06 0.00014 22.5 1.1 1 23 443 465 443 465 0.98 13 13 0.0068 0.49 11.4 0.6 1 23 471 494 471 494 0.96
Sequence Information
- Coding Sequence
- ATGGAAACAGTGTATATAAAAACAGAAAATATTGAAATAGAAATCGAACCTTTAGACTCCCATGAGGATCAGGTAAAAACAGAACCTAATTCAGAACAAAACTCAACCGAAGCAAAAGGAGAAAGTTATGATTATGACAACAATACAAATACTGAAGTTACAAACAGTTTGAACCTGATACCTGACTTAAATCAGCAAAATATAGGTTATAGCTTACCAGAGACATACTTACATCAAAGTTTGACAGTAGATAATACTACCACACAGTCAGGAATCCAAGGAACGTCTCAAGACATCGGAAAAGTGTATGAGAATGGAAAAATTAACCGTCTAAACTGCAACCAGTGCGGAAAATCTTTTAAAAACCGAGCTAACCTCAAAAATCATTTAAAATTTGTGCATGCGGATGATCAAACCGTAGAATGTTCTGAGTGTATGAGAAGTTTTAAATCAATTCTGTATCTACGCTCACACATGAGCTCTGTACATGCTAAAACAGAATTAGTTCAGTGCAAGCAATGCGATAAAGTATTTCTAAACAAAAAGAAATTAAACAACCATATTTACTACACTCACAGACAGCCAGAAGAGCAGGTCACTTGCAAAGTCTGCTCAAAAACATTCAAGGGTCCGTACAATTTGAAAATTCATATGAGATACGTTCATCCCGATGGAGAGCCTCACCCGTGTCCGTTCTGCTATAAGACGTTCAAAGTTGAAATGTTGCTTCAACGCCACATGAGATGGGCTCATCCTAACGATGGACTTATATACAAATGTCAAGAATGCAATAAAATCCTACCGTCCATAGACTGCTACAAGACCCATATGAAAAACGTTCACCTATTTGACCGAGCCACGTGTGATCTTTGCAAACGGACGTTCAAAACCAAAAAATCTTTGGAACGGCACATGAAAAATATTCACAATGGTAAAGACAATACCGTGACAGAAGTCTACACTCCCAAAGAGCATACGTGCCAGTTTTGTGAACGTACTTTTGTGAATACAACCTCTTTGTTCTGGCATATAGAACGGTTTCATGCTCAGGATCAGAAGCTACCGAACAATTTGTGTATAATTTGCAACAAACAGTTATCTGACTATGCAGCGTTGCATCGACATCTAACCTCCGTTCACTCGTTAGAAACAGCCATGTGTAAAATTTGTCAGAAAGAATTCAAATCTCCCATTAATTTGCAAAACCACATACGTATAACCCATGCCCCACCCGAAGCTGAGCAAAAGTGTGAGACATGTCAAAAAACATTCAAGTGTGCTTTACATCTTCGCATGCATGTGCTAGCAGTCCACGACGGAGGGCAATACCCATGTGAGATCTGTCAGAAGACGTTCAGCTCCGTCAAATATTTGAGCAAGCATATCAAATCTCACAACCAATCACGAGATTTCCAATGCGATATATGTTTAAAAATGTATAAAAACATAAACGCGGTTAACAAACATAAAAAATTAGTTCACAACAGCGTTAAATGTCAAATCTGCAATGTAAAGCAAGTTAATATTGACGACCATTTAAGGAGGTTTCATCCGGAAATAGCATTGAATTTGTCTATGGCTAATACGGATATAGAACAAGATGGACCCATAGACTTAAAATTGAAAATAAATAACTCAATGGTTTCGCAAGCTGATACGTCAGTGAAAGAGACAGCAATAGATGGAGTTACGTGCGAGGTGTGCGAGAGCAGGATAGATAGCTCAGAATATAAAGTACATGCAATGAATTGTAAAAGACCACCGATTTTAGAAGTTACTATTAAGACCGAAGTTCACGATGAAACTTATGAGAGCTAA
- Protein Sequence
- METVYIKTENIEIEIEPLDSHEDQVKTEPNSEQNSTEAKGESYDYDNNTNTEVTNSLNLIPDLNQQNIGYSLPETYLHQSLTVDNTTTQSGIQGTSQDIGKVYENGKINRLNCNQCGKSFKNRANLKNHLKFVHADDQTVECSECMRSFKSILYLRSHMSSVHAKTELVQCKQCDKVFLNKKKLNNHIYYTHRQPEEQVTCKVCSKTFKGPYNLKIHMRYVHPDGEPHPCPFCYKTFKVEMLLQRHMRWAHPNDGLIYKCQECNKILPSIDCYKTHMKNVHLFDRATCDLCKRTFKTKKSLERHMKNIHNGKDNTVTEVYTPKEHTCQFCERTFVNTTSLFWHIERFHAQDQKLPNNLCIICNKQLSDYAALHRHLTSVHSLETAMCKICQKEFKSPINLQNHIRITHAPPEAEQKCETCQKTFKCALHLRMHVLAVHDGGQYPCEICQKTFSSVKYLSKHIKSHNQSRDFQCDICLKMYKNINAVNKHKKLVHNSVKCQICNVKQVNIDDHLRRFHPEIALNLSMANTDIEQDGPIDLKLKINNSMVSQADTSVKETAIDGVTCEVCESRIDSSEYKVHAMNCKRPPILEVTIKTEVHDETYES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -