Basic Information

Insect: Ligdia adustata
Gene Symbol: -
Assembly: GCA_947049285.1
Location: CAMRIN010000077.1:299813-310101[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.39 27 5.9 9.8 1 23 201 224 201 224 0.97

2 12 0.00021 0.015 16.1 0.1 1 23 233 255 233 255 0.96

3 12 4.6e-05 0.0033 18.2 0.5 2 23 262 283 261 283 0.97

4 12 8.7e-06 0.00062 20.5 0.1 1 23 289 311 289 311 0.98

5 12 2.4e-06 0.00017 22.2 0.5 1 23 320 342 320 342 0.97

6 12 0.00027 0.019 15.8 0.2 2 23 349 370 348 370 0.96

7 12 5.7e-05 0.004 17.9 4.5 1 23 376 398 376 398 0.98

8 12 4e-06 0.00028 21.5 1.1 1 23 404 426 404 426 0.99

9 12 4.3e-07 3e-05 24.6 2.6 1 23 432 454 432 454 0.99

10 12 0.00013 0.0094 16.8 0.9 1 23 460 481 460 481 0.96

11 12 7.9 5.6e+02 1.7 1.2 3 23 489 511 487 511 0.84

12 12 0.00033 0.024 15.5 3.9 1 23 517 539 517 539 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.39	27	5.9	9.8	1	23	201	224	201	224	0.97
2	12	0.00021	0.015	16.1	0.1	1	23	233	255	233	255	0.96
3	12	4.6e-05	0.0033	18.2	0.5	2	23	262	283	261	283	0.97
4	12	8.7e-06	0.00062	20.5	0.1	1	23	289	311	289	311	0.98
5	12	2.4e-06	0.00017	22.2	0.5	1	23	320	342	320	342	0.97
6	12	0.00027	0.019	15.8	0.2	2	23	349	370	348	370	0.96
7	12	5.7e-05	0.004	17.9	4.5	1	23	376	398	376	398	0.98
8	12	4e-06	0.00028	21.5	1.1	1	23	404	426	404	426	0.99
9	12	4.3e-07	3e-05	24.6	2.6	1	23	432	454	432	454	0.99
10	12	0.00013	0.0094	16.8	0.9	1	23	460	481	460	481	0.96
11	12	7.9	5.6e+02	1.7	1.2	3	23	489	511	487	511	0.84
12	12	0.00033	0.024	15.5	3.9	1	23	517	539	517	539	0.98

Sequence Information

Coding Sequence: ATGGACATCACGACACCAAATGCTAATGATATTAATAAGTGTCATACAGAAATTGGAAAAGAAAACCTTATTGAAATCGAAATACCGTTCCCACTCTTCCAATATTTAAGTTCTGAGGAATGCAATCTGCAGAACATTTGTCGAATATGTCTCTCTGTGAACCACCCAGTGCTCTACCCACTGTTCTCAAATGATGAGCAAAGTGTTCTAGCAACTATGTTCATGGCCATATCTGAAGTTCAGATGAGTACAGGTGATGGGCTGCCTTCACATATATGCCTAAGATGTCAAACAGATATGATGAACTATTACGAATTCAAAATGAAGTGTGTAAAGGCAGATTACACACTAAAGTCTGTACTGAAAGGTGATTTTAATATTGAAAAAGAGTCATCTGAGAATAAAAATGATATGAAGACCAGTATTAACAATGATTCACAAACAGTGAAAGTGACAGTAGATAATGAAAATATCGATACTGGCTGTTGTTCTTCCATATCCAAACACCCTGAAGAAAAAAATATAGATACCAAGAGTTTGTCTAAAGATATAAATAAATCTAAAACTGAACTCAGCAAAAATAGTAAAGAAAAAGTAAAACACCAATGCAGATTTTGTCCAAAGAAATACCACAAGGCGAAAACGTTAAGGAAACACGTGAACAAGTGCCATTCTGCATCAGAAATGGACGGACAGTACGCATGTACAGAATGCAAGGAAGCTTTCGACTCAGAGTCCGATCTAAAATTGCATGCCATGTTACACAACCAAAGTTCCGGGTGGAAATGTGCAGAGTGTCAGAAAGAATTTAAAGGTCGGACGGCGTTACGTCGTCATATCGAACGCCACATGCAACGTCGGCGCTTCGTGTGCGAGCGATGTGGCGCCGCGTTCGTAGAGAAATACGCGCTTCGACGGCATCTGCGAGTACACGCACCGCAAGCGCAAGAGAAGAAATTTGCTTGCACACAATGTGACAAGAGGTTCGTGTCAAACGGCACTTTAGCGACGCACATGTCAACGCACGCCACTACACGGGATTGCATCTGCGGTGTGTGCGGCGCCTCGTTCGCCTCGCAGCGACTGCTCGCCTCGCACGAGCGAGTGCACTCCACCGACAAGCCTTACGCTTGCACATACTGCGACAAGAGGTTCCGTCACGAGTCGACGCGCAACACGCACGTGCGCACGCACACTGGAGAGCGGCCCTACGTGTGCGTTTACTGCGGCAACTCCTTCATACAGCACTCCAATATGGCGCTGCACATGAGGACACACACAGGCGAGAAGCCTTACGAGTGCAGTTATTGCGAGCGCAAGTTCTCCTCGAGCTCCACACTGAAGGCGCACAAACGCACGCACACCGGCGAACGACCGTACTCATGCAAAGTTTGTGGCAAGAGCTTTGCTCGTGTAAGCATGAAGAACCACATGCGTCTTCACAGCGGCGAGCGTCCGCACGCGTGCCCCGCGCCCGCCTGCGCCCGTCGGTTCCTCACCGCGCATCGACTGAGAGACCACTATCGGCTGCACACCGGAGAAAAACCATTCGAATGCGCCAACTGCAGTCAGAAGTTCGCAACGAAATGTCAATTATTAACACACATGAAAAAACACAAAAACAAAGAGAAAGCCAGCAAGAAAGGCGTCATGCTTGTGCCGGTTACAGTGTCGGATAAAACCAGACCTACCAATAATCCACAAATAGAATACCAAACCATTGAAACTTTTGATAATACAAATGCAGCAAATATGAACGAGGCTATAATCGAAAATCCAATACAATCAACCGAAAACTTAATATATCAAGATGATACCAACATTAAAACTGAAGTAATAGTATTAGACAGTGCTCCTAATTTAGTTAGCAATCAAGTTGTTCTAAATGATTTGAACTATATCAATAACGATGTTAATGTAGTGACAGTGAATGAAGGGGAAATGAGCATTTCGTCAGCCAGTACAACTGTGGATGGCATGGGACAGACGGTCAAACTTTACCAATATGACCAAAGTTTACTACAGATTCATACAGGCGGAGGACAACTCACTATTAGTAGAATTAGCAGTAAAATGACTACTAATTTTTAA
Protein Sequence: MDITTPNANDINKCHTEIGKENLIEIEIPFPLFQYLSSEECNLQNICRICLSVNHPVLYPLFSNDEQSVLATMFMAISEVQMSTGDGLPSHICLRCQTDMMNYYEFKMKCVKADYTLKSVLKGDFNIEKESSENKNDMKTSINNDSQTVKVTVDNENIDTGCCSSISKHPEEKNIDTKSLSKDINKSKTELSKNSKEKVKHQCRFCPKKYHKAKTLRKHVNKCHSASEMDGQYACTECKEAFDSESDLKLHAMLHNQSSGWKCAECQKEFKGRTALRRHIERHMQRRRFVCERCGAAFVEKYALRRHLRVHAPQAQEKKFACTQCDKRFVSNGTLATHMSTHATTRDCICGVCGASFASQRLLASHERVHSTDKPYACTYCDKRFRHESTRNTHVRTHTGERPYVCVYCGNSFIQHSNMALHMRTHTGEKPYECSYCERKFSSSSTLKAHKRTHTGERPYSCKVCGKSFARVSMKNHMRLHSGERPHACPAPACARRFLTAHRLRDHYRLHTGEKPFECANCSQKFATKCQLLTHMKKHKNKEKASKKGVMLVPVTVSDKTRPTNNPQIEYQTIETFDNTNAANMNEAIIENPIQSTENLIYQDDTNIKTEVIVLDSAPNLVSNQVVLNDLNYINNDVNVVTVNEGEMSISSASTTVDGMGQTVKLYQYDQSLLQIHTGGGQLTISRISSKMTTNF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -