Basic Information

Insect: Ligdia adustata
Gene Symbol: -
Assembly: GCA_947049285.1
Location: CAMRIN010000057.1:11025-17224[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.001 0.073 14.0 4.4 1 23 137 159 137 159 0.97

2 12 1e-05 0.00074 20.2 1.3 1 23 164 186 164 186 0.97

3 12 6e-05 0.0042 17.8 0.6 1 23 217 239 217 239 0.99

4 12 1.9e-05 0.0014 19.4 1.7 1 23 248 270 248 270 0.97

5 12 3.6e-07 2.5e-05 24.8 2.7 1 23 275 297 275 297 0.98

6 12 6.1e-05 0.0043 17.8 1.7 3 23 305 325 304 325 0.98

7 12 6.4e-08 4.5e-06 27.2 0.5 1 23 331 353 331 353 0.96

8 12 1.9e-05 0.0014 19.4 2.8 1 23 359 381 359 381 0.97

9 12 5.1e-05 0.0036 18.1 2.4 1 23 387 409 387 409 0.98

10 12 0.0063 0.44 11.5 5.2 3 23 417 437 415 437 0.98

11 12 8.2e-08 5.8e-06 26.8 1.7 1 23 443 465 443 465 0.99

12 12 0.00015 0.01 16.6 0.2 1 20 471 490 471 493 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.001	0.073	14.0	4.4	1	23	137	159	137	159	0.97
2	12	1e-05	0.00074	20.2	1.3	1	23	164	186	164	186	0.97
3	12	6e-05	0.0042	17.8	0.6	1	23	217	239	217	239	0.99
4	12	1.9e-05	0.0014	19.4	1.7	1	23	248	270	248	270	0.97
5	12	3.6e-07	2.5e-05	24.8	2.7	1	23	275	297	275	297	0.98
6	12	6.1e-05	0.0043	17.8	1.7	3	23	305	325	304	325	0.98
7	12	6.4e-08	4.5e-06	27.2	0.5	1	23	331	353	331	353	0.96
8	12	1.9e-05	0.0014	19.4	2.8	1	23	359	381	359	381	0.97
9	12	5.1e-05	0.0036	18.1	2.4	1	23	387	409	387	409	0.98
10	12	0.0063	0.44	11.5	5.2	3	23	417	437	415	437	0.98
11	12	8.2e-08	5.8e-06	26.8	1.7	1	23	443	465	443	465	0.99
12	12	0.00015	0.01	16.6	0.2	1	20	471	490	471	493	0.94

Sequence Information

Coding Sequence: ATGCTGGACACAAAAGCATTAGCGTCATGTCGGACTTGTATGAAATCTGATGTTAATTTAGTTCACTTGTTCAAACCAGTGATGATAATTGATGAGAGCAACAACCTCCAACTGTTTGAGTTATTGATGGAATGCACTACGATACAGGTGAAACAAGATGATGGCCTACCGCAAAACATTTGTGACAAATGTAGCAAACTTCTGCAAGACTTTTCAAAATTCCGTCAGCAAGCCAATAATTCAGACATATATTTTAAGAAATTACTGCAAAAAAACGTTAAAGAAGAAATCAAAGCTGAAATAAAAGACGATATTAAAATAGAAATGGAATATTTTGATGCATTCAGTGACTCGCCACTTGAATATTCAGATGCTAATGAACATGAAATAAAACCAGAACATGAACATTTTAATTGTACACAATGTAGTAAAACATTTACTAAAGAAAAAAAATACCTCAAACATTTACAATCTCATACAGATTTTATATTTCCATGTCCATATTGCAAAAAGCAGTTTCGCAAGGAGTCTTCATGGCAAAAGCATTTAGCTAAACACGATCAACAGCCCGTTGCTGAAAGTATACTTAATAAGGATTGGTGCACAACCGTTGCAATAAAAAACGAAAATGGTACTGAAGAACATAGATTCAAATGCCAGCTCTGTGCAAAGACATTTGCCAAGCTCGGAGGATTATCAAATCATATGAATAGGCACGAGCAGAATACAAATGTAAATTTATTTATGTGTGACACTTGCAATAAAAGTTTTCAGACTAAGCCTATGTTACGAAGGCATGTGAAACTGCACCTTGAGAAGTCTCATAAATGTACACAGTGTGAAAAAAGTTATTCAAGAAGTGATCAGTTGAAGGCCCATATGAATGTGCATAAGGACGGCAAGCCTAATATTTGTCCACACTGCAGTAAAGCCTTCGCCCAAGTGTGCAGTCTAAAGGACCACATCCGCATTCACACCCGTGAGACCCCGTACCTGTGCTCGGAGTGCGGGAAAGGTTTCGCGAACAGCTCCAACCTGCGACAACACATGCTGCGGCACACTGGCGTCAAGCCGTACGCTTGCAAACTGTGCCCTAAAAAATTCTGTACCAAAGGTCAAATGACGTCCCACATGGTGACTCACACGGGCGCTCATCCATACAAATGCGACAAGTGTGGCGCCGCCTTCACTAAACATAACTCTCTGAAGAAACACAGCATGATCCACACGGGGCAGAGGCCGTTCGGATGCGACACATGTCCTATGCGGTTCACTTGCAAAGACCACTTGAAGCGTCACTATCGTATACACACCGGTGAGAAACCTTACAAGTGTAACTTTTGTGATCGTGCATTCACGCAGAGCAACGACCTGGCCAAACACATGAAGACTCACCTCGGACAGAACATTTACGAATGCTCAGTGTGCGGTGTCAGTTTTCGTTTACAAAGCGAATTGAAGCTCCACTACCCAGTTCATTTCTCTACAGACGACCCTACCGTCAAGAACCTTCTAGAGCAAGCCGAGAAAAACATGCTAGAACAAGCACAAAAAAACCTTCTAGAACAAGCGGGGAAGAACATTCTAGAACAAGCGGGGAAGAACATTCTAGAACAAGCGGGGAAGAACATTCTAGAACAAGCGGGGAAGAACATTCTAGAACATGCCGGAAAGAGTATATTAGAACAAGCACAGAAGAAGTTGCCAGAAGAAATGGTTTCCCATGAGAAGTTCATGATAACAATAAACAGTATGGACGGCAGTAACATGGTGGCTATTAATATCGAGCCAGAAAGTAATATGCTGAAAGCGTAG
Protein Sequence: MLDTKALASCRTCMKSDVNLVHLFKPVMIIDESNNLQLFELLMECTTIQVKQDDGLPQNICDKCSKLLQDFSKFRQQANNSDIYFKKLLQKNVKEEIKAEIKDDIKIEMEYFDAFSDSPLEYSDANEHEIKPEHEHFNCTQCSKTFTKEKKYLKHLQSHTDFIFPCPYCKKQFRKESSWQKHLAKHDQQPVAESILNKDWCTTVAIKNENGTEEHRFKCQLCAKTFAKLGGLSNHMNRHEQNTNVNLFMCDTCNKSFQTKPMLRRHVKLHLEKSHKCTQCEKSYSRSDQLKAHMNVHKDGKPNICPHCSKAFAQVCSLKDHIRIHTRETPYLCSECGKGFANSSNLRQHMLRHTGVKPYACKLCPKKFCTKGQMTSHMVTHTGAHPYKCDKCGAAFTKHNSLKKHSMIHTGQRPFGCDTCPMRFTCKDHLKRHYRIHTGEKPYKCNFCDRAFTQSNDLAKHMKTHLGQNIYECSVCGVSFRLQSELKLHYPVHFSTDDPTVKNLLEQAEKNMLEQAQKNLLEQAGKNILEQAGKNILEQAGKNILEQAGKNILEHAGKSILEQAQKKLPEEMVSHEKFMITINSMDGSNMVAINIEPESNMLKA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -