Ladu004457.1
Basic Information
- Insect
- Ligdia adustata
- Gene Symbol
- -
- Assembly
- GCA_947049285.1
- Location
- CAMRIN010000105.1:1245025-1248758[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.0023 0.16 12.9 0.3 2 23 30 52 29 52 0.94 2 29 2.3 1.6e+02 3.4 1.2 3 23 122 142 121 142 0.92 3 29 0.00019 0.013 16.3 0.1 1 23 146 169 146 169 0.96 4 29 0.35 25 6.0 0.3 2 21 175 194 175 195 0.92 5 29 0.0076 0.54 11.2 0.5 1 23 202 225 202 225 0.91 6 29 1.8 1.3e+02 3.8 1.6 1 22 232 253 232 255 0.85 7 29 0.026 1.8 9.5 2.4 1 23 260 282 260 282 0.95 8 29 1.3e-06 9.1e-05 23.1 0.4 1 20 288 307 288 310 0.94 9 29 0.0018 0.13 13.2 5.6 1 23 316 339 316 339 0.97 10 29 0.39 28 5.8 1.2 3 22 370 390 368 393 0.85 11 29 0.98 70 4.6 0.4 2 23 419 441 418 441 0.95 12 29 0.00052 0.037 14.9 0.7 1 23 464 486 464 486 0.98 13 29 8.1e-05 0.0057 17.4 2.2 1 23 490 513 490 513 0.90 14 29 0.2 14 6.8 0.5 3 20 520 537 520 539 0.95 15 29 0.0035 0.25 12.3 1.8 1 23 546 569 546 569 0.97 16 29 0.012 0.84 10.6 0.2 1 21 575 595 575 598 0.89 17 29 0.51 36 5.5 4.0 1 23 602 624 602 624 0.96 18 29 1.6e-05 0.0011 19.7 2.5 1 20 630 649 630 652 0.94 19 29 1.6 1.1e+02 3.9 1.7 1 14 658 671 658 673 0.91 20 29 0.15 11 7.2 4.1 3 22 686 705 684 708 0.89 21 29 0.2 14 6.7 0.1 2 23 734 756 733 756 0.95 22 29 0.00069 0.049 14.5 0.6 1 23 779 801 779 801 0.97 23 29 1.7e-05 0.0012 19.6 1.9 1 23 805 828 805 828 0.94 24 29 0.23 16 6.6 0.4 3 20 835 852 835 854 0.94 25 29 0.00028 0.02 15.7 1.3 1 23 861 884 861 884 0.97 26 29 0.01 0.72 10.8 0.0 1 22 890 911 890 913 0.88 27 29 0.0011 0.075 13.9 3.0 1 23 917 939 917 939 0.94 28 29 3.2e-05 0.0023 18.7 0.9 1 20 945 964 945 967 0.94 29 29 0.0028 0.2 12.6 1.5 1 23 973 996 973 996 0.97
Sequence Information
- Coding Sequence
- ATGAGTTGTTCGATTGCCAGGCGGAACGCCGAGATTTTAGTGCGTAACTCGACGGTATACCCCTTCAGGCTCCCCGAGTCGAGCATAGTATGCGTGCACTGCGCCGAAAGTTTCAAGGAATCTTCCGCTTTTAGATCGCATATGGACATAGAACACGAAACGTTCTCATCCAAAAACATATTCAGAATACACAGCAGTGAGAGCTATGTCAAAGTTGACTGCACGAATATACGCTGCCGATTGTGCCTCGAACCTTGTGAGACTCTCGAAAAGATTGCCCACCATTTAAAAGTTATACATAACAAACAAATAAACACGGATAATGAATTAGGTGTACAGCCTTTCAAACCTGAAACGCTTCTGTGCGCTATATGCAATTCGAAGCAATTCAATTTGCGTCAATTGAGCCGGCATACGCTAACGCACTTCTCGAGGTACACGTGTGATGCTTGCGGCAAATCATACGCAACCACCAACGCTTTACAGGTCCACATCAAATTTGCGCACGTGTTGAACCAGAGGGTATGCAGGAAATGCAAATCTACTTTCACATCAGCCGAAGCTCAGAGGAAACACGTCCAAGAGTCCAGCAAGTGCTGGGGTCACGTTTGCAACGTTTGCGGCCAAAGGTTCATGTCTTGGACAACGAAGCAGGCGCATTTGACTGATGCTCATGGCGTTCCAAAAAGACCCCACGTATGTCCGGTTTGTAGCGTCGAATTCGCAGACAGAAAATCATGTCGTGTACACTTTATATTGACACATACAAACGAAGTCTTCATATGTTCCTGTTGTGGTCTCAAATTCGACAccaaaaggaagctcgaagagcatcaagtcacgcacaccaaagagaagttgttcccttgcacggtttgccccaagtctttctcgaggaaaaagaacctaatacagcacatgtggatacatagcgaacacaagaggttcgagtgtaaatcgtgtaccaaaaagtttaaccaacgagtcacgtggaagcatcacatgaaatcataccaTCCGGAATTTGAGGATTTCGAAAGTCTGTGGCAAAATAATAACGTGAAACTTAATGTTGAGAAGTTAGACAAACTACCCTCAGTCGACGTATGTTGCATTGTCTGCTGCAAGGAGTTCAATGACCCGGAAGAGTTTAGGCAGCACATGATGCTGGATGATCATAAAACCCCGTACAAAACTTTACGATTGTTGATGTACTCTCAATCGTCTACCCTCAAAGTAGACATCACTAACCTCACGTGTCGCGTTTGTTCCAATGCCTTCCATAATTTGGAAGAAATCGCGCAACACATATCCAAGGTTCATCGCGTTACCGCTCTCAACTTGAACCACGATTTGGGCGTTCACCCTTTTAAAATATTCAAGGATATTTATACTTGCTTATCTTGTCCGGAGAAGTTTGTCACGTTGCGCGCTCTGAGCAGACACACTCAGACGCATTATCTAAAGCATACGTGCGAAACTTGCGGGAAGTCATACTCGAATTTAAGTTCACTGAAACTTCATACGACGTTTGCACATCTCGGCCCGAAAGCGTGGTGTAAGAAATGCAAAACCATGTTCAATTCCACGGAAGAGAAACAGAGACACTTGGCCGCATCCTTGCGTTGTTGGCTTTTTTCGTGTCACGTTTGCGAGGAGAAGTTTATGTCGTCCAGTCTCAAAGTGAAACATTTGCAAACAGCACACAACATTGCTAATCACTACACGTGCCCGGAGTGTCCAGCAGTTTTCATTGACAAAGGCAAACGGCGTACTCATTTTACAGCTACTCACACGGATAAGTTCAAATGCTCGTGTTGCAGTAAGAGATTCCCTTCCAAGTTTATGCTCGACCAACATTCTCTGGTTCACTCTTCCGAGAAAAAGTTTCAATGCCACGTGTGCTCCAAAGAATTTAGCAGAAAGCAAAACTTGAAGCAACACCTGCCGATACATATGAAGGACAAACCGTTCAAGTGCGCATCTTGTAATAAGCAGTTCAATCAGCGCTATACGACGGCTTATCCGTTCAGACTGCCGTCCGATGACGTCTGTTGTACCATCTGCTGCAAGGAATTCAATGACCCGGAAGAATTTAGGCACCACATGTTGCAAGACGACCATAAGTCGCCTCACAAGATCTTGCGCTTGTTGTTACCCTCGCAGTCGGCCACACTGAAAGTAGATATCACCGATCTTCGGTGCCGTGTTTGCTCCAGTGTCTTTGACAATCTTGACGATATCGCTCAACATATATCCAAAGTTCATCGTGTTGCCGCTCTCAATCTAAACTACGAACTAGGAGTTCATCCTTTCAAGATATACAAGGACGTATTCATTTGCCTATTCTGTCCGGAAAAGTTTGTCACGTTACGAGCGTTGAGTAGACACACCCAGACGCATTACTTAAGGCATACGTGCGAGACTTGCGGAAAGTCGTACTCTAATTTGAGTTCGCTCAAAGTTCACACGAACTTCGCTCACCTCGGTCCCAAAGCTTGGTGCAAGAAATGTAAAACTATGTTCGATTCGTTAGAGGACAAGCAGAAACATCTAGCGGTGTCGCTGAGTTGTTGGTTGTTCTCCTGTGACATATGTGGAGAGAAATTCATGTCGCCAAGTCTCAAAGTGAAGCATATGCACACGTCACACAACTCTTCGCGGAATTACGCATGCCCGGAGTGCCCAGAAGTTTTTATAGACAAAGGCAAGCGACGGAGTCACTTTATCGCCGCGCACACGGAAAAATTCAAATGTTCGTGTTGCGATAAAACATTCTCGACCAACTCGAAGCTTTTAAACCACGCCGTCGTTCACTCTTCAGAAAAAAAATATCAATGCAACGTATGTTTAAAAGAATTTAGCAGAAAGAATAATCTAAAACAACATTTGCCGATCCATATGGAAGACAAGCCGTACAAATGCATGGTTTGCAATAAGCAGTTTAACCAGCGCGTCGTTTGGAAATCCCACATGACTTCTTACCACCCCGAAGTGGACATTACGAAAACTTGA
- Protein Sequence
- MSCSIARRNAEILVRNSTVYPFRLPESSIVCVHCAESFKESSAFRSHMDIEHETFSSKNIFRIHSSESYVKVDCTNIRCRLCLEPCETLEKIAHHLKVIHNKQINTDNELGVQPFKPETLLCAICNSKQFNLRQLSRHTLTHFSRYTCDACGKSYATTNALQVHIKFAHVLNQRVCRKCKSTFTSAEAQRKHVQESSKCWGHVCNVCGQRFMSWTTKQAHLTDAHGVPKRPHVCPVCSVEFADRKSCRVHFILTHTNEVFICSCCGLKFDTKRKLEEHQVTHTKEKLFPCTVCPKSFSRKKNLIQHMWIHSEHKRFECKSCTKKFNQRVTWKHHMKSYHPEFEDFESLWQNNNVKLNVEKLDKLPSVDVCCIVCCKEFNDPEEFRQHMMLDDHKTPYKTLRLLMYSQSSTLKVDITNLTCRVCSNAFHNLEEIAQHISKVHRVTALNLNHDLGVHPFKIFKDIYTCLSCPEKFVTLRALSRHTQTHYLKHTCETCGKSYSNLSSLKLHTTFAHLGPKAWCKKCKTMFNSTEEKQRHLAASLRCWLFSCHVCEEKFMSSSLKVKHLQTAHNIANHYTCPECPAVFIDKGKRRTHFTATHTDKFKCSCCSKRFPSKFMLDQHSLVHSSEKKFQCHVCSKEFSRKQNLKQHLPIHMKDKPFKCASCNKQFNQRYTTAYPFRLPSDDVCCTICCKEFNDPEEFRHHMLQDDHKSPHKILRLLLPSQSATLKVDITDLRCRVCSSVFDNLDDIAQHISKVHRVAALNLNYELGVHPFKIYKDVFICLFCPEKFVTLRALSRHTQTHYLRHTCETCGKSYSNLSSLKVHTNFAHLGPKAWCKKCKTMFDSLEDKQKHLAVSLSCWLFSCDICGEKFMSPSLKVKHMHTSHNSSRNYACPECPEVFIDKGKRRSHFIAAHTEKFKCSCCDKTFSTNSKLLNHAVVHSSEKKYQCNVCLKEFSRKNNLKQHLPIHMEDKPYKCMVCNKQFNQRVVWKSHMTSYHPEVDITKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -