Ladu012694.2
Basic Information
- Insect
- Ligdia adustata
- Gene Symbol
- -
- Assembly
- GCA_947049285.1
- Location
- CAMRIN010000351.1:99166-110547[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.015 1.1 10.3 0.9 3 23 740 761 739 761 0.90 2 23 2 1.4e+02 3.6 0.1 6 23 1113 1132 1113 1132 0.90 3 23 0.064 4.6 8.3 0.3 1 21 1137 1157 1137 1158 0.96 4 23 0.00035 0.025 15.4 1.4 2 22 1236 1256 1235 1256 0.94 5 23 0.28 20 6.3 0.2 3 23 1265 1286 1263 1286 0.95 6 23 0.0017 0.12 13.3 1.0 3 23 1307 1328 1305 1328 0.94 7 23 0.002 0.15 13.0 0.6 1 23 1334 1357 1334 1357 0.91 8 23 0.13 9.5 7.3 0.0 1 23 1381 1404 1381 1404 0.90 9 23 0.0059 0.42 11.6 3.5 1 23 1409 1431 1409 1431 0.97 10 23 0.0096 0.68 10.9 0.4 1 23 1437 1460 1437 1460 0.95 11 23 9.9e-05 0.007 17.1 1.3 1 23 1468 1490 1468 1490 0.98 12 23 0.00019 0.013 16.3 1.8 1 23 1538 1561 1538 1561 0.97 13 23 0.0077 0.54 11.2 1.4 1 23 1621 1644 1621 1644 0.96 14 23 0.0022 0.15 12.9 1.5 2 23 1672 1694 1671 1694 0.95 15 23 0.31 22 6.2 0.1 3 23 1701 1722 1700 1722 0.94 16 23 0.011 0.75 10.8 0.2 1 21 1766 1786 1766 1787 0.95 17 23 0.0013 0.093 13.6 0.6 1 23 1797 1819 1797 1819 0.93 18 23 0.00012 0.0085 16.9 0.3 2 23 1914 1936 1914 1936 0.93 19 23 8.2e-07 5.8e-05 23.7 1.3 3 23 1943 1963 1942 1963 0.98 20 23 0.002 0.14 13.0 0.7 1 23 1983 2006 1983 2006 0.95 21 23 0.22 16 6.6 0.0 1 23 2027 2049 2027 2049 0.98 22 23 0.029 2.1 9.4 0.6 1 23 2055 2078 2055 2078 0.95 23 23 0.00027 0.019 15.8 0.4 1 23 2086 2109 2086 2109 0.96
Sequence Information
- Coding Sequence
- ATGAGTGTGAACTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTATTGCCGATATTTCCTACCACCAGTTCGGATGAATCGGAACCTCCCGTCCTCGTCACGAAAATCAAGGATTGCGTGTCGGTCCAGATAAACGAAAATGACGAACTGCCGTCGAATGTCTGCAGGAAATGCATGGACAATGTCAATAACTGGCATATATTCAAGACTGTTTGTGAAAAGACACAAAACAAACTACAGTCTCTGATTAAAAAGGATGGCAGCCTACTAGAAGAGGTGAAAATCAAAAGTGAACCTTATGATGATGGCTATGATGATGGAGTGGTTATTGATGGCTCATATCCAGTCATTGAGAATGTGGCGTCAACAAGCAAGTTCCAGCCTGAAGGTCCACCTATCCTGGCTTCCTTGGGGCTCACACCCAGAAGCGAGAAGAATGTGGATCCCCGAATGGACTGGCACCGAGTACATGCCATACTGGATATTGTACAAGAGAACCATATCATTGACTCGCTACAGTCCACCGAGGAAACAGACATACTGCATCATTCCGATCACGATTCAGAATCAGAGGGGGAACTACGAACAGACATAGAAGACACTTACATACACTGTGATAAAGGCTACAGATGCAGAAACGAAACTATCATATCGAAAGAGCCACTATCATCACGAGATTCCAATATAAAGGAGGCAAATAAAAGAAAACGTAAGACCGCCCTGAAGCAATGTCCTCGCCCTAAAAACGCATGGCAGTTACTATTTACCGACGACCTTCTCGAACTCATTGTCACATCCACGAACGAGAACATCTTGAAACACACGAAACAATACTCCACTGTAACTACTGCCAACGAAATAAAATCGATGATTGGTATTTTGTACCTCCATGGAATCATGAGACCCACCTACCAAGAGTACAGCGATCTTTGGGACACCTACTGCGGCATGACATGCGTCAGACGAGCAATGAGCTTAGAGCGTTTCAGATTTCTCGTTAAGAATCTAAGCTTCGACGTACAAAACGACGATTTAAACCAATGCGATACGATGAAACGCATGCGCAAAGCGTTCGAAATGTTTGCGATGAACTGCAGGACGTCCTTGGATACAGAGTCGGTCGCGGTCGTTGACGAGATCGTCGTTCCAGTTTACGGACCTTGTCCGTTTCGCTACGATATCGATAAGAAGCCGATGAAACGAGGCATTAAAGCGGTGCTGCTAGTTGACCCCACCAACTTCTACGTAAGCAATCTAGACGTGATAACGGACCCGTACTTCGGAGCCGAGGAGATTGTGAAGAAAATAACGCTTCATTTGTACGAATCCGGTCGGACCATCGTAATGGATAGCTGGTACTTCTCGAATAATTTGATGACTGCACTCAAAAGTTACAATCTTAATACGTTGGCGGCTTTGAATCCGCGAAATGAGAAAATACCGCCTCTATTTTTGTCGCAGTACAGGAAAAACCAGACGTTCTTATCTGGGTTTTTGGACGAGGAAGTATCTCTCACTTCGTACGTCGGCTCCCGATCAAAGGCTATCAACGTCATCGCGAACGAACCTCGATTTTACAAGAAGGGGTTCAGCATTAAGCATGCTACTGCGGTGTCCGTGTACAAGAAATATCAATCGGCAGTGGAAGTGATCGATGTTTTGATGCATTATTACACGACTATGCAGCACACTAACGATTGGACGCTGTCATTGTTCTTTACATTGTTGAATATCGCGTCAGTGAACGCTCAGGTTATCTGGAGTTCAAGACATGCTGGTGTGTCGAAGCGACGTTTGTTTATCAGAGATTTAGCGCTAGAGTTGATGCAGAATGAAGATTTCTCACTGGCTGCATTACCTGAGGATCAGTTGAGGCGTCCATTGCCCCCGTTGTCGAGTAAACCATCGTTTAGGAACAGGAAGCGGTGCAGGATTTGTATAACGACCACTAAACGCGATAGACGTACTAGAGAGTATTGTTTGAAATGTGGACAGTTTATCTGTAGGGAGCACAGTGTCTCAGGTGTCGAAAGCGAGAACAACGAAGATGAAGACTACGAGGAGGAGATGCAAGAGTCCGAGCCAGCCGAGCCGCCGACGCCCGCCAAAATACCAAACATACCCGAAGTGTCCATCACCGTCATGAGAAACACGGGGGAGACTCTCCACGCGAGGCAAGGCATACAGCAACTAGCTTCCAAGGACTGTCTCATCTGCGGCCGCACGTACAGGTACTCACACAACGCACGCAGGCACGAGCTAGCGTCACACAGCTTCGATAGATACACTAACAAAGTGACGAACAAAAAATCACACCACAACCGTATGTTGCCTAAACTCAGACCCAACCCGTTCAATCCGAAAGCGCGACTCATGCCTAACCCGATCAGCCACAAACTACAATTCATGCAACACAAACTTGTCCCCGCCAAAATAATACCGCAGAAAGTAATCACCCCACCGAAACCTATACCTATTAAAACTGTAAAGTCGTCACAGCATAATCTGCCGTATCCACTGCGTATCAAAGCGCTCAAGGACTTGCAGATAAAGAAAAAAGAACCGCAAATCTTGAAAACATTGCTCACCGCCAAGCCCGAAGTGTTGGTTTCCGAGCCGGAAATTATGAATTCTGGACCGGAGAGCCCCGAAACTCTGATATCTGAGCCAGAAATTGCATCTTTCCAAGTCGAGACTATCCTTTCGGAGCCTCTTGATTACGACCCGAATCAAGAAGACGAAGGAGACACGGAACCCACTAATCAAACCCAAAATTACGACACCGTCGATATGGAATCCGATCGTGAGATCGAGATCGCACGTCTACAGGAAAACGAGACAGACATCGTTGAAAATCACGACGAAGAAGTGAACCAAGAGCACGAACAAGAGAACCACATCGATGAAAGCGAGAAACAAGCCGAGAGCGACAACGAAGAAGATCAAGACGTGGAGAGCCAGGGGAATATGGAAATCGACGAGAGTTGCACTCACGCCAGCATCGACGAAATAGCCAAACAAAACGAAAACGGAGAAGAAGGCGAGAATGATGAACAGGAAGTAAATCCTGAGGAAAATGAGGACGAAGAAGATATGCCACCGCCTCCCGTCGTAGAGATTAATGAGGAAATGCAGAATAATTCCTCGAGCGAAATGAACGAGGAGGACGAAGAATTAGACGATACGGCAGATATGAACGAGACAGGCGACCCCGAGGAGCAAGTACTCGATCCGAGTAAGACTTACGTCACCAGAGCTCAGAAAGAATTCATTGAAAGGTATCGTGATGTCATCCAACAGATCAACACAAAACGGTGCATCTGTTGCGATAAAACGTACCCGCGACGAAAGGCGGTCGTTCAGCATCTGCAGAAGAACGGGCACAAAGTTCCAAAACATACGTGTTATAACTGCGTCGTGACCTTCACACATATCGGGGCGTTGCTCAGCCATATGAGAGCGAACACTTGCACGGATCTTTGGAAAGTCGTGCTCGATAAAGAAGGTATTCCCGATGATATGGTCATAGAAGACAAACCCATACTGGAGCTACCCAAGCCTACCAACCAGAAGGATATTTTCAACGCGCGGTCGTACGCTTGCCGACTCTGTCCCGCCAAGTTTCAGCTGAAGCAGTCTATCATGAAGCACGTGTTCGATGTTCATGAGGACGGACAGTCCGGAGTGCCGTTAACTTGCGTACACTGCCGGAACAGCTTCAAAGACAAATCCATGCTCAAGAAACATATTCGCGTCGGCGAATGTACTGTCTGCATCAACTGTGATCTGTGCTCGGAACAATTCTCCAACATGCAAGACTTCAGCGAGCACGCTCTCACTATGCACGCGGATCACTTCGAAAAACCAGCCAATCAGAGCAAGTGTATCGACGGTCGCGCCACAGACTGCTCTCTCTGTGGCAAAAAGACCAGCAACTATCAGAATCTGGTGAAACATCTGAAGTTCGTACACAACGAGGAGAAGCCTCATTACTGCCAAAACTGCGACGCTAAGTTCGAGCAAGCAGCCGACTTGAATAAACACATTTACGACGAGCATTCGGATCAAGCGCTGCAAGCCTTAGAACCGGACATGTCTCTCGTCAAAGAAGAGGCGGAGGAGTACCATTACTCTTGTACGGAATGTAACGCCATATTCGAAACTGTCGACGCGTGGACGGACCATCAAGTGGCGGAGCACAATCAAGTCGCTCATCATTGCGATCAGTGCGACAAGAAATTCCTTCGACCCTCAGAGTTAGCCGAGCACAAGAATACCCACTTGAGGGTCAAGTTCTACTCTTGCAGTATTTGCACGAATTCGTACAGCACTCCTCAAAAATTATCAGATCACGTTCAACAAGCTCATCCTCCCGCTAGCGAGACAGAGTTCTACTGTGAGGTGTGTGTACGATCCTTCAAAAGTCGACAAGCGTTTTCTAACCATATGCGTATTCACGCAAAAGTACCCACTACTAACAGAAAGCCAGGTGAAGCCAAAGGATTCGATCCGCGGATCATCGGCAAACCGATCAAACAATACACGATCCAACCCGGTTTCGTTCACTTCAAACCGAATTCAAACGTTCCTAACGCGCCTTATTCCTGCGATATCTGCGGGAAAGGCTTCATGCACAAGAAAAACATTTGGAAGCACAAGAAAGTATTGCACGCCGATATTATTAACGACAGGAACGATAGTGAAGATAATACGATGCACGCCTCCACGGAAGACGACGATTACAACCCGGATGAGAACGGAGCTCTTTCTACGCCTCAATTCAACAGCTTTAACTTCTCCAACTTTAACAACAGTACGCCACAACAACCGCAGCCGGACGCCATGCCGTACTCGTGCGAACTGTGCTTCAAGCGTTTCCCGATCAGGACCAGTCTGTGGAAACACAAACGAGCCAAACACGGAATAGTGAACCCCGGCTCCAACGCGAGTATCATCGGTAGCGACGGACAAATTCAGCAGAAGTCAGATTCTGGCCGATCCAGCTGCACTATATGCAAAATAACGTTCGCCGACAAGAAATCGTACTATCGTCACAGAAAGAACGTTCACAAAACGGCCACGGAAATGTGCAAGCTATGCGGCAAGCCGTTGAACTCCACCTTGGAACTGTACGAGCATCTGAAAGCGGCGCACGCTCGGGAGCTACTCGGTTACAACGCGAACCAAGGGTCGAGTAAGGCACAGGACGTGCCGCAAGATCAGGACGTAGACTACGACAACGAAACGGAATCTGCTGACCCCAGTTTGGATTACCAGGCGCGATACCCTTGCGACACCTGCGGTAAACAGTTCGTCGGTCTATTAGCGTTACAGAACCATCAATGCATAAACCAGCTCCCTTCGCAACCGCAGACGTTTGACTGCGAGATCTGCCACAAGAGTTACACGTCCATAGCGGCTCTGAAGAGTCATCGCGGTTGGCATTTGCGCTCGCCTGACGGGAAAGCGGCTGCCAACAACAGCGGTCTTTGGATGCCTCAGCACAAAGTGACGAGCAAAGTCAGTAAGCACGAGGTCGTCGACGCGGTTCAGTTGGCTCGCGTCTCGCACTCGGCCCCCTCGCACTCGTCGCCCGCCGCCGCCGTCACGGCTAAACGGAGGTTACCCCCCGAAGTGGAGGTCACCGTCGTAAACCCTAACAAGAAACTCCGCTCCGACGATTCGGTCGAAATGGACCATCAGAACAGCGAAGCGGTCGACGGCCGATACTGTACCATTTGCGATAAAGAATTCACGAAACGCGCCGCCTACCAACGACATATGGACGAGGTTCACCAACCGAACTCCGTGTTCTGTCCCGTTTGTGACAGAAGTTTCACGAGGAAATCTACGCTCTTGGTGCACATGAAGAAGCATTACGAAAGCGGCGAGGGAAGCTCATCGGCGGTGCAGGGCGAGGAAGACTTCTATAGGTATACCTGTGACCATTGCGGGGCTGTTTTCGATAGTTTGAAAGAGATGACCGTTCATAAGGCGAGGCAGCATCCCGAGGAGTCGGGGGACTCTGAGGACGAGGGTAACGCGCCTGCGGCTCCCCCCGGGGAGTTCACGTGTGGTCAGTGCGGGGACGGAGTGGCCAGTCCCAGGGACCTGCTCGCCCACCGTTCAATGCACGCTACTCCTACGAAATTTTTCTGCAACATCTGCAAAGTTTACTTCGCCAGGGCGCTCGACCTCTCCTCCCATACTCGTGCGAGACATTCTGACAACGAAAAAGTTTTCTTTCCGTGTGCCATGTGCGACCGCTTCTATATGAACAAGAAGAGTTTACAGAGGCACATCGAAATGGCACATTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDESEPPVLVTKIKDCVSVQINENDELPSNVCRKCMDNVNNWHIFKTVCEKTQNKLQSLIKKDGSLLEEVKIKSEPYDDGYDDGVVIDGSYPVIENVASTSKFQPEGPPILASLGLTPRSEKNVDPRMDWHRVHAILDIVQENHIIDSLQSTEETDILHHSDHDSESEGELRTDIEDTYIHCDKGYRCRNETIISKEPLSSRDSNIKEANKRKRKTALKQCPRPKNAWQLLFTDDLLELIVTSTNENILKHTKQYSTVTTANEIKSMIGILYLHGIMRPTYQEYSDLWDTYCGMTCVRRAMSLERFRFLVKNLSFDVQNDDLNQCDTMKRMRKAFEMFAMNCRTSLDTESVAVVDEIVVPVYGPCPFRYDIDKKPMKRGIKAVLLVDPTNFYVSNLDVITDPYFGAEEIVKKITLHLYESGRTIVMDSWYFSNNLMTALKSYNLNTLAALNPRNEKIPPLFLSQYRKNQTFLSGFLDEEVSLTSYVGSRSKAINVIANEPRFYKKGFSIKHATAVSVYKKYQSAVEVIDVLMHYYTTMQHTNDWTLSLFFTLLNIASVNAQVIWSSRHAGVSKRRLFIRDLALELMQNEDFSLAALPEDQLRRPLPPLSSKPSFRNRKRCRICITTTKRDRRTREYCLKCGQFICREHSVSGVESENNEDEDYEEEMQESEPAEPPTPAKIPNIPEVSITVMRNTGETLHARQGIQQLASKDCLICGRTYRYSHNARRHELASHSFDRYTNKVTNKKSHHNRMLPKLRPNPFNPKARLMPNPISHKLQFMQHKLVPAKIIPQKVITPPKPIPIKTVKSSQHNLPYPLRIKALKDLQIKKKEPQILKTLLTAKPEVLVSEPEIMNSGPESPETLISEPEIASFQVETILSEPLDYDPNQEDEGDTEPTNQTQNYDTVDMESDREIEIARLQENETDIVENHDEEVNQEHEQENHIDESEKQAESDNEEDQDVESQGNMEIDESCTHASIDEIAKQNENGEEGENDEQEVNPEENEDEEDMPPPPVVEINEEMQNNSSSEMNEEDEELDDTADMNETGDPEEQVLDPSKTYVTRAQKEFIERYRDVIQQINTKRCICCDKTYPRRKAVVQHLQKNGHKVPKHTCYNCVVTFTHIGALLSHMRANTCTDLWKVVLDKEGIPDDMVIEDKPILELPKPTNQKDIFNARSYACRLCPAKFQLKQSIMKHVFDVHEDGQSGVPLTCVHCRNSFKDKSMLKKHIRVGECTVCINCDLCSEQFSNMQDFSEHALTMHADHFEKPANQSKCIDGRATDCSLCGKKTSNYQNLVKHLKFVHNEEKPHYCQNCDAKFEQAADLNKHIYDEHSDQALQALEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYSCSICTNSYSTPQKLSDHVQQAHPPASETEFYCEVCVRSFKSRQAFSNHMRIHAKVPTTNRKPGEAKGFDPRIIGKPIKQYTIQPGFVHFKPNSNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADIINDRNDSEDNTMHASTEDDDYNPDENGALSTPQFNSFNFSNFNNSTPQQPQPDAMPYSCELCFKRFPIRTSLWKHKRAKHGIVNPGSNASIIGSDGQIQQKSDSGRSSCTICKITFADKKSYYRHRKNVHKTATEMCKLCGKPLNSTLELYEHLKAAHARELLGYNANQGSSKAQDVPQDQDVDYDNETESADPSLDYQARYPCDTCGKQFVGLLALQNHQCINQLPSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDAVQLARVSHSAPSHSSPAAAVTAKRRLPPEVEVTVVNPNKKLRSDDSVEMDHQNSEAVDGRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDRSFTRKSTLLVHMKKHYESGEGSSSAVQGEEDFYRYTCDHCGAVFDSLKEMTVHKARQHPEESGDSEDEGNAPAAPPGEFTCGQCGDGVASPRDLLAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -