Ladu021643.1
Basic Information
- Insect
- Ligdia adustata
- Gene Symbol
- -
- Assembly
- GCA_947049285.1
- Location
- CAMRIN010000848.1:26565-36356[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0083 0.59 11.1 0.2 1 23 212 234 212 234 0.97 2 23 0.51 36 5.5 1.8 1 23 261 283 261 283 0.96 3 23 1.4 97 4.1 0.0 1 22 337 358 337 361 0.88 4 23 0.00018 0.013 16.3 0.2 1 23 377 399 377 399 0.94 5 23 4.7 3.3e+02 2.4 0.1 5 22 407 424 405 427 0.89 6 23 0.00033 0.023 15.5 1.3 3 23 517 538 516 538 0.96 7 23 0.017 1.2 10.1 2.8 3 23 548 568 546 568 0.95 8 23 7.2e-05 0.0051 17.6 0.4 1 23 574 596 574 596 0.98 9 23 5.6e-06 0.0004 21.1 0.3 1 23 602 624 602 624 0.98 10 23 3.5e-06 0.00025 21.7 0.4 1 23 630 652 630 652 0.98 11 23 4.4e-05 0.0031 18.3 3.1 1 23 658 681 658 681 0.98 12 23 0.0019 0.13 13.1 0.4 2 23 687 709 686 709 0.93 13 23 1e-05 0.00074 20.2 0.2 2 23 719 741 718 741 0.95 14 23 0.0013 0.092 13.6 0.9 2 23 749 770 748 770 0.96 15 23 0.027 1.9 9.5 5.7 1 23 776 798 776 798 0.93 16 23 0.0034 0.24 12.3 1.7 1 23 808 831 808 831 0.94 17 23 0.011 0.78 10.7 1.7 2 21 835 854 834 855 0.92 18 23 1.3e-05 0.00093 19.9 0.9 2 23 856 878 855 878 0.96 19 23 5 3.6e+02 2.3 4.4 1 23 887 910 887 910 0.95 20 23 0.014 0.98 10.4 2.9 1 23 915 938 915 938 0.97 21 23 7.2 5.1e+02 1.9 2.5 3 20 945 962 943 964 0.84 22 23 4.1e-05 0.0029 18.3 0.1 2 23 972 993 971 993 0.96 23 23 0.00026 0.018 15.8 0.6 1 23 998 1021 998 1021 0.92
Sequence Information
- Coding Sequence
- ATGGACAAAAGTGAGGTCAGCATGGAATACACATGCAATTCATACACAGAGATGTTCACATTGCAGACTGAAGTTGACAAACATTCGGAGATGCTCACAATGCATCTAAGTCATGACAAAGTTATCTCTATGGAAGAAACCAAAATTAAGAACAAAGATAATTATGAAAGTGACCCTAAACACAGAAGCTCCCCGTGCCCCATGACTGTACCCATACAAGATGTAGATAAGAAATGTCTTACTCGGGAGTTGACACACGGTACTGAAACTCGCATCAATGTAGATGAAAGTGACATAAATAACGATGAAAATACTGAAACTAGTCCTAACGAGAACTCTTCACCTCAGGTGATCTCCACTACACCAGACTTAGAAAAAAACATGGATTATGATTATATTCAGCAAACTAAACATGTTAATGCTAAAGATATATCTATGGATGAAAGTCCAATAATGAACAATGATAATATTGAAAGCACATCTAAAAACACTAGCTCTCCGTGCCTCGAGACTGTTCCCATACAAGATCTACATAATGACATGGAGAGTCCTACTCGACAGGTGCACCGTGATTCTGATACAAACATGGCTGTAAATGAGAGTAATACTATGAACACTGTTGAAAGTCCTAAATACCAATGCACTTTTTGCTCCAATACATTTGCTGAGCAAGGCAAGCTAGAAGTACACGCAGCAAGTCACACACGATTAAAACTTGATAAGGATACAGACGTCAATGTAACAGAAAATAGAACCGACTGCAGCAACGTCACAGCTCAGTACGCTTGCTCGTCGTGTTCAGTAACTTGTCTCACTCAGTCAGACCTGGATAAGCACCAGTCGAGTCACACTCAGCACAGCGAAGTGAAGATTTGGAAGGTCGCGCTTGTGGACGTTTGGAAAACGCATCCGCTGATCATGAGCCAAGTAACGTTGCCCAAAATCATTAAAGAGGATTTAGACGTGGATGAATACTCATCCCCGATTACATATGAATGCAGTTGGGAGTACTCATGCCCTCCTTGTATGGCAACTTTCCCCACACAAGAAGACCTCGACTATCATATGGGAACCTCCTGGCACTCCCTGCAATTGACCTATGATAACAGCAATCATTCCTATAAACCGTTTCAATGCAAGGAGTGTGGATGGGGCTTCATGCAGGAGAGCACCCTCGAAACTCACTCTATACTTCATAAGCCTTTCCCTAACGTCTGCGAGTGTGGCATTGGATACTATCAGAAAATAGACTTGGACATGCATCGCCGGCTGCTCAATCATTATCCAAAGATCAAGAAAGAACCTGAGCCGAATTATACACCCAAAGAATCAAAGTTTAGACCCACTGAAGTGATACAATCGACCAGCAAAATAGGCCCGCGACTTAAAGCCAGTCTCACATTTAAACAATCTAAAGATAAATCAAATAAATCACCAAGAAAACGAAATAGTGCGACAACTAAAGGAATAGCACTTATGAAAAGCGATGATGTCAACTTCAATAGTGAAAATTTTATGCTCGTAATGAATGAGGAGAGCGAACGAGATTGTAGTATATGTCAGAAGACGTTCAGCTCCATAACTACATATAAGACTCACATGATAAAATATCACGGATGGACTTTCGACATTTATAAACATTGCAAAATCTGCGGAAAAGAGTTCAATTGTGCCAGGAGTTTGAACGATCACATGGCGGCACATATGGGCATCAAACCGTACAAATGCCAAATATGCAACAAGGGTTATTCACAAGAGGGTGCGCTTAACTTGCACAAGTTGAGACATACGGGCGAGAGGAATTTCCCCTGCGAGACCTGCGGTAAAAGTTTCTATAACGGTGCAAGTCTTAGACTACACCAGAGAGTTCATACAGGGGAAAAACCCTACGAGTGCAAGGTTTGCTCGAAAAGCTTCGCGGATCCATCTGCTTACAAACGGCATAAGTTGATCCATACTGGAGTTAAGTCGCATAAGTGTAAAGTTTGCGAGAAAGCCTACTGCGATCCCGCGGCGCTGCATAGACACATCCAAACCATACATAACGGGTACTCGGTGCCTTGCGACGTCTGTCACATGACGTTCAAGTCCAAGGCGGCGGCGCGTGCACACATGCTGTTCCAGCACGACAACGCCACAGAGCGAGACTATTCCGAGTGCGATTACTGCGGCAAAAAGTTTGCCATGAAAGGAAACCTCATTACCCACGTGAGATTGATGCATATGAAAATCGACGCAACGACCCAATGTGATATTTGCAACAAAAGATATTCGAAGAGCAGTATGTCCGATCATATTAGACGAGTGCACCTCAAGGCATTTGATCACAAATGTGGTGAATGCGGAAGGAGATTCCTACACCGCCACCAGTTGAGAAAGCACGGGGAGTTACACAGACCTGTGGTGAGTCGGGACAGGTTGCATGAGTGCGATTACTGCCACAAGTCCTACTACGACAAGGAGGCGGTCGGGAAACACATCGTGAGAGTACATTTGGGTATCGAATGCGGCTCCTGCTCTAGAACCTTCAGTACATCCATACTACTAAAGAAACACAAATGCAAACAGTGCAAAGTTTGCAAGAAAACTTTCATCTCGCCAGAAGCCTTGAAAAGGCACTACATCAAGCGCCACGTCAGAAAATGTGACCAGGAGAGGCACGAGTGCAGCTACTGCTCCAAACTGTTCCTGTTTAAAGACAGAATGTTTGCACATATTAGGCACGTGCACACCGTCGAGTCCTTCCAGTGTGACCATTGCGGGGACACATTCCCCACCCGGCATAAGATCGTGTACCATATACGTCAGGAGCACACCATGCTGACTCTTTACTGCGACTGTTGCATGAAAAAGTTTTACTCCGAGAGTGATTTTCGTAAACACAAACTCTCCAATTGCCGTCCTCGAGAGATACCTTGTGAAATTTGCGAGAAGACATTCCCGAGCACAAGTGGACTGAGGAACCACCTGTCGAGCCACGGACCTGATAGATATGAATGCGATACCTGTGGACGTATGTTCAAACATAGAGGCAGTATACTCAGACATTTGGTATTAGTGCACGCGCTTAAAGTGAATCTGAAAAATAAGAGACTAATTAACGCTTTAAAAGTGAAAATAAAGAATAAAAGGCTAAATAATAGAGTGAAACTTAAAAATACATCAAGTGTTGATTGA
- Protein Sequence
- MDKSEVSMEYTCNSYTEMFTLQTEVDKHSEMLTMHLSHDKVISMEETKIKNKDNYESDPKHRSSPCPMTVPIQDVDKKCLTRELTHGTETRINVDESDINNDENTETSPNENSSPQVISTTPDLEKNMDYDYIQQTKHVNAKDISMDESPIMNNDNIESTSKNTSSPCLETVPIQDLHNDMESPTRQVHRDSDTNMAVNESNTMNTVESPKYQCTFCSNTFAEQGKLEVHAASHTRLKLDKDTDVNVTENRTDCSNVTAQYACSSCSVTCLTQSDLDKHQSSHTQHSEVKIWKVALVDVWKTHPLIMSQVTLPKIIKEDLDVDEYSSPITYECSWEYSCPPCMATFPTQEDLDYHMGTSWHSLQLTYDNSNHSYKPFQCKECGWGFMQESTLETHSILHKPFPNVCECGIGYYQKIDLDMHRRLLNHYPKIKKEPEPNYTPKESKFRPTEVIQSTSKIGPRLKASLTFKQSKDKSNKSPRKRNSATTKGIALMKSDDVNFNSENFMLVMNEESERDCSICQKTFSSITTYKTHMIKYHGWTFDIYKHCKICGKEFNCARSLNDHMAAHMGIKPYKCQICNKGYSQEGALNLHKLRHTGERNFPCETCGKSFYNGASLRLHQRVHTGEKPYECKVCSKSFADPSAYKRHKLIHTGVKSHKCKVCEKAYCDPAALHRHIQTIHNGYSVPCDVCHMTFKSKAAARAHMLFQHDNATERDYSECDYCGKKFAMKGNLITHVRLMHMKIDATTQCDICNKRYSKSSMSDHIRRVHLKAFDHKCGECGRRFLHRHQLRKHGELHRPVVSRDRLHECDYCHKSYYDKEAVGKHIVRVHLGIECGSCSRTFSTSILLKKHKCKQCKVCKKTFISPEALKRHYIKRHVRKCDQERHECSYCSKLFLFKDRMFAHIRHVHTVESFQCDHCGDTFPTRHKIVYHIRQEHTMLTLYCDCCMKKFYSESDFRKHKLSNCRPREIPCEICEKTFPSTSGLRNHLSSHGPDRYECDTCGRMFKHRGSILRHLVLVHALKVNLKNKRLINALKVKIKNKRLNNRVKLKNTSSVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -