Ladu004461.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ligdia adustata
Gene Symbol
-
Assembly
GCA_947049285.1
Location
CAMRIN010000105.1:1264385-1273110[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 40 0.12 8.8 7.4 2.8 1 21 86 106 86 107 0.96
2 40 0.088 6.3 7.9 0.1 3 23 136 156 135 156 0.94
3 40 0.18 13 6.9 1.3 2 23 179 200 178 200 0.97
4 40 0.0051 0.36 11.8 0.2 1 23 204 226 204 226 0.95
5 40 0.29 21 6.2 0.0 1 23 231 254 231 254 0.87
6 40 0.0044 0.31 12.0 0.6 1 23 260 283 260 283 0.96
7 40 0.0075 0.53 11.2 3.6 1 23 290 313 290 313 0.97
8 40 3.7e-05 0.0027 18.5 3.6 1 23 320 342 320 342 0.97
9 40 0.24 17 6.5 0.1 1 23 429 452 429 452 0.95
10 40 0.51 36 5.5 0.1 2 23 479 500 478 500 0.96
11 40 0.1 7.4 7.6 3.3 1 23 522 544 522 544 0.99
12 40 0.00033 0.024 15.5 0.5 1 20 548 567 548 569 0.95
13 40 0.031 2.2 9.3 0.1 1 23 579 602 579 602 0.96
14 40 0.14 9.9 7.2 0.8 1 23 608 631 608 631 0.94
15 40 1.4e-05 0.001 19.8 0.7 1 23 638 661 638 661 0.97
16 40 6.3 4.5e+02 2.0 0.0 2 23 772 794 771 794 0.92
17 40 0.021 1.5 9.8 0.7 2 23 817 838 816 838 0.97
18 40 8.7e-05 0.0062 17.3 0.3 1 23 842 864 842 864 0.98
19 40 0.84 59 4.8 0.1 1 23 869 892 869 892 0.94
20 40 0.0021 0.15 13.0 2.2 1 23 898 921 898 921 0.97
21 40 0.034 2.4 9.2 1.3 1 23 927 950 927 950 0.95
22 40 0.14 9.7 7.3 0.1 2 23 1051 1073 1050 1073 0.91
23 40 0.08 5.7 8.0 5.1 1 23 1096 1118 1096 1118 0.97
24 40 0.019 1.3 10.0 1.2 2 23 1123 1145 1122 1145 0.92
25 40 0.43 31 5.7 1.2 1 23 1176 1198 1176 1198 0.97
26 40 0.17 12 7.0 5.2 2 21 1267 1286 1266 1288 0.94
27 40 0.00087 0.062 14.2 0.4 2 23 1293 1315 1293 1315 0.95
28 40 4.1 2.9e+02 2.6 1.7 1 23 1371 1393 1371 1393 0.94
29 40 0.01 0.74 10.8 0.5 1 23 1460 1482 1460 1482 0.98
30 40 0.00026 0.018 15.8 1.3 3 23 1488 1509 1486 1509 0.94
31 40 0.00047 0.033 15.0 2.2 1 23 1517 1540 1517 1540 0.96
32 40 0.00028 0.02 15.7 3.6 1 23 1545 1568 1545 1568 0.96
33 40 0.0051 0.36 11.8 0.6 1 23 1603 1625 1603 1625 0.97
34 40 0.12 8.6 7.4 0.1 2 23 1721 1743 1720 1743 0.96
35 40 0.034 2.4 9.2 0.7 1 23 1764 1786 1764 1786 0.95
36 40 1.8e-07 1.3e-05 25.8 0.2 1 23 1790 1812 1790 1812 0.98
37 40 3e-05 0.0022 18.8 0.4 2 23 1818 1840 1817 1840 0.92
38 40 0.48 34 5.6 2.0 1 23 1845 1868 1845 1868 0.94
39 40 0.075 5.3 8.1 0.6 1 23 1874 1897 1874 1897 0.96
40 40 0.12 8.2 7.5 0.1 3 23 1905 1926 1904 1926 0.92

Sequence Information

Coding Sequence
ATGGTGTATATTTGCTATCCCATTAAGAAAATTGAGAGAAATGGACATACTGGCAATGAAACAGATGAAAGTTTTACATACGAGTACTTAGAGGAAAGTGACGAAAATGATCCGCAAGAAAATAACCAGGAAGTAAAACGCAAATCCAGTTACCAGAGAAGTGCGAGATCCGAGTCGAGGATTGCTACTAAGCGGAATGCTTCTTCAATTCTAGCCTGCTGGTCATTTCTCCCGTTTAGATGGATTAAAAACAGATTCAGATGTTCATTTTGCGATGATAGCTTCACAGAATGCCATTCTCTCAGAGATCATGTAAGAATTTGCGCCTCGCAGCATACAACAACTGACGCGTATAAAAACTTCAGGGAAATGGCATTGATCAATGTTGACGTCTCAGATGCTATTTGTCGTCTCTGTACAACTCCATTCGCTGACCTCTCTCAAATGCGTAACCATGTCGCTGAACACGGCTTCGAATTTGACGATCAACACCCAGATGGCGTTCTGCCTTTCATACTAGATAAAGACTGCTGGAAATGCTTTGTTTGCTCGGAGCAGTTCAATAACTTCTTGAAGATGTACAAGCATATGAATATTCATTACCAGCATTACATATGCGATGCGTGTGGAAAGGGTTTTATGACAGCGTATCGGCTGAGGAAGCATTCGGAAGTGCACAATTCTGGGTCGTTCGATTGTGACTTGTGTGGTAGAATTTTCTCTGTGCGACCAGCAAGAGACGCTCACAAAGCGACCGCTCACAGGAAAGGTCCTCGCTATGAATGCCCTCAATGCAACATACGATTCGTGACTTACTACGATAGAATGACACATTTGAAAGAGATGCACAGCGAAAACGATGTCGTCTATCAATGCACTTATTGCGAGTCGACGTTTAAAACGAGCGGAAGCCGAGCTACTCATATTCGTAATTGCCATATTCTGCCCCAACGTGTTCATAAGTGCACGTCTTGTCCTTGGAAGTTTAAAACAAGTTACGAGTTGAAGAGGCACATGGTGAGACATGCGCTTAAGGGAGATAACATGTGCAGATGTAACATCTGCGGTCCAAATAACGAAGCTCAGAGTAGTGTAGGTGCGATTAGCAAAGGTAGGAAGTTGAAAGAAAACGTTAGCGATCGTCAAATGCGTAGAAGGCGTCGCGCTAATAACGAGTTGCCCGAAGAGTCTGAGAAAAGAATATCAAAAACAATGATGCGTCGAAACGCGACGATATTGCTGGAATGTTCCACAGCTTGGGCTTTTCGATGGTTTCATGGCGCATTCTATTGCTCATACTGTGACCTCAAGGTCGTAGAAGTTCAAGCTTTAAGAGAACACATCATTGTTAGCCACATAAATGAGCTTCCTTCCAAACGCATATTTGCAAAACTTACTGAAAACAATATGGTCAAAATAGACGTGACCGATCTTCGCTGCAGAATTTGTAATATTCCCCTAAACGGTATCGAATCTCTCAAATACCATATCCAATCGCATGGTAGGAGTTTGAATGAAGGTTATAATGACGGAGTCTTGCCCTTCAAACTTAACGACAACGGATACCGCTGTCAAAAATGCTCATGCGATTTTGGCACATTCTCAAAAATTAACGAACACATGAACATTCATTATCAAAATTACGTTTGTGACACTTGTGGAAAAGGATTTGTGTCCAAATCACGATTTAGGACTCATATCCATGCTGGTTACAATTTCTACGAAAAGGGAAGCTATCCCTGCGGCATATGTGCGGAAATATTTAGTACTAGAGCTGAAAGAAACACGCATAGATTAAAAGTTCATAAAAAAGGAGTGAGGTACTCATGCCCGCGATGCCTAGAAACATTTACAAGCTATAATGCTAGAGTTAAACATTTACTCAACTATCATGCGCAAAACGTTCATATGTTTGAATGCGATGTTTGCGGAAAGTCATTTGATACGAGCTCTAAACGAACCGCACACTACAGATCGGTTCACTCTACTTTAGAAGAGCAGGAGAAATTTAAATGTAGAGTGGATCGCATCAAAACAGAAGACGACCCTTCGTCCACAAATGCTCCTAAAATCCTTTGGAAGCGAAGGAGAAAGCTGTTAGAAGACAAAGCTAACGCAGCTTTGCTAATAGAATACTCCAATGCTATAGTTTTCAGATGGCAAAGAGGAAAGTTTATGTGTGCGTACTGTCCGAATATATACGCCAGTATACATGAAATACGTTCGCATTCAGTAGCACACAATAGATTAGACATATTCGAAAACCCTCAAGTGAGGCAGCTATTCCCTTTAAAAGTAGAAATTACCAATCTATCCTGTACAGTTTGTGACGTTCCGACGAGTAGTATCGAGATTTTAAAAGTTCACCTCTCAAAAGTACATTGTAAAATGATTGATCCAAACTATACAGATGGAATTATACCTTTTTATCTTACCGGCAAAGAGTTGAAGTGCGTTCTCTGCGGCTTGCAGTTTGACAAGTTCATGACTCTTTTCATCCACATGAATAAACATTACCAGAGCTTCGTCTGCGATACATGTGGGAAAGCATATTCCGGTCAAAATAAATTGAGATCTCATCAAGCTATGCATGAAACTGGAGAGTTCAAATGTACTCAGTGCGAGATTGTTCTACCGAATCGTATAGTAAGAAATCGACACATGAACGATGCTCACGGCCCAAAAAACAGGTATCGATGCCCTATTTGCGATGTCCACTTCGATTCATATCACAATCGATTGCGGCATCTCAACGTTGTTCATGGAGAAAAAACCGAATACAAATGTACATATTGTCCTGCTGTCTTTATTAGCTGTACGTCTAGATACTCTCACATAAACGGTGTACATATGCGAAAACGAAAAAAGAAGAAAAAGAAAGACCCTGAAGGAAGTAACATAACAGGCGATTCGCAAAGTCAGTTGACGCAGTTGGCCAAGACTCACCAGAAAAATAATGCGCTTACATTACTCAAATTGTCAAACATTTGCCCGTTTAATTTCCGCGGTAATGTTTTCGTATGCTGCTGTTGTGACTATTCTTCAGAAGAGTTCACTGCTATCAGAAAACACGTCAATGATCATCCGAACTTATTGGACACCATCAAAATTGCGTGTGGAATAATTTTGAAGGCTGACGTTACCGATCTTCAGTGTAAAATTTGCTCTCAAAGCCTCGAAGACATTTCATCTCTAGCTGATCATTTGATCTTCATTCACGACCAATCTATTGAAAAACAATATGGGCTCGGAATTATGTCATTCCAAAATCTGGGTCGTAAAATTTACAGATGCATTCATTGCGACCGCTTCTGTGAGACTTTTGGAAGTTTGAATAATCATATGAACAGTCACTATTCTAATGTTCAATGCCCCAAATGTAATAAAACTTTTGCCGATTACCAGAGGATGAAGGGTCATTTGTTTAAAAGACATAAACGACCCAAGAAAGTAGATAAAAGAGACAACGCCATACTCATTATGAAGTACTCAAATATTTGCCCTTTTAAATATCGCAGCAGCTCGTTCATGTGCTTTTATTGTAAATTCGCTTCGCCGCAAATCAGCAAAATAAGAAAGCATATAAAAGAACATAGAGACTTAGTAGAAACTATTAAACTGCGTAGTTGTGTATTATTAAAAGCTGATATTACTAATCTTACATGCGAGATTTGCTCTACAGGCATGACAGATATACCTTCATTAGTAACCCATTTAATAGATGTGCACGACCAACCAATCGATTTAAGATATGGTACGGGTATCATGTCTTTTCTATTGGAGGACGAAGGACCTTCCAAGTGTGCTCATTGCGAACTCGCGTTTAAACATTATTTGGAATTGAACCGTCACATGAACTGTCATTACGCTAATAATGTTTGCTCGGAATGCGGGCAAACTTTTGCTGATGCTTGCAAGCTCGCTACTCACATAACAAAAGTGCATTCTAGTAAGAACGATAAGCTCTTTCAGTTTATGAGAGATAAGGAAGGATCCGTCACGCTCACTGTAAAATGGAGACCCATACGGAAGTACAACGACGAGAGGGACAATGCCGCAATAATTCTAGAATGTTCAAATATTTGCCCTTTTAGATGGAATCGTAGTGTATTTTGTTGTTCGTATTGTACGCTTACTTCTGCTGATTTTGGCCAAATAAGAGAGCATACGATTAATCATCCCAACAGGATAGAAGCTTTACGTAGACTACGAGGTCTATCCATCAAAGCTGATATCACTGATTTAAAATGTGAGCTCTGTCTTGACAGCATAAAAGATATTTCATCATTATTTGATCACCTTGTTGAAGTACATAACAAGCCTCTCAACAAAAAATACGGTCCGGGCGTTGTGCCATTTCTTCTCGATGGCGATGTATTCAAATGCGCTAGCTGTGATCTGTCTTTTGATCTATTTATCAATTtaaacaaacatctgaacgagcatttcgctaatagcatatgtccgttgtgcggcaagtcgttttctcaagattctaggttgaaatcgcatttgcttcattctcacaaaaatggaaaacagactcatcattcatgtagtaaatgcggcgaaaccttcgtcaacctttccgacaaagaaaaacacttacgtttgaaacatggcatcatgaaacacaaatgtccatactgtagcgaatcgttcaaaacttacacgaacaggataaagcatatgaaagagttgcatgataagaaaatagagtatcgttgtggtttatgcgccgcttcgtttttgctatgcagccaacggaccaagcatatgaaacaggttcatgttaaggataaacgatttgcttgcacggtgtgtcatttccgcgcagtcacggctgcttcgttgaagaatcatatgatcaagcacggtggggagaggaaataccaatgtcaagtgtACTACCATCGCAGCCTGATATCGAAGAGTAAGCAAGAAAAATGCGGATCCCGAGAAAATGTCGCTATTATCTTAGAATGTTCTAATATGTGTCCGTTCTTATGGCGACGAAACGTATATGGATGCACGATATGTCCTTTCGATTCACATAACTTCGCACATTGCCGTCATCACTATAGGACGCACTTAAATAAACGTGATGCTTTAAAGAGAGCTCGTACCCCACTGAGCGTGAAAGTTGAAGTCTCAGATTTAAAGTGCACTGTATGCTACGAGAGCGTAACGGATATAAACTCCTTAGTTGAACATCTTATCACGAAGCACAAGAAGAATATACACAGAGACTTGGGTATCTGCCTCCGACCTTTCCTCTTAACAGACGGATTTAAGTGTCCCAATTGTTCGTTGACTTTTGTCAATTTCTTAAGCCTCAGCGAGCATTCTAATGAGCACTACCCTCATTTCGTTTGCGGTGAATGCGGCAAAGCGTTCTCCAACGAAAGCAATTTACGCAACCATTTGGATACTCACGAGAAGCCGGCAGTTGTCTGTCCGAGATGCGACGAAGTGTTCTCTTCTAAATCGCATCTGAGAATTCACGCTAAAGACGAACATGGTTTGTTTCCGTACAAATGTCCGTACTGTCAGGTGAAGTGTGAGGGTTATGCGCAGAGATTACGGCACATGAGTGAACGTCATGGTGTCAGTGTCACTTATCCTTGTAGTTTGTGTCCTATGGTTTGCGCTAGCAGCAGTGCGAGGTCGAAGCACGTGCTTCGCAGGCATAACACTGAAAAACGTTTATTGTGCTCCACTTGTGGTGATGTGTTCGTCACTGCAACTGAATTGAGAGTGCATAATATGCTCAAACATCAAAGACAGTAA
Protein Sequence
MVYICYPIKKIERNGHTGNETDESFTYEYLEESDENDPQENNQEVKRKSSYQRSARSESRIATKRNASSILACWSFLPFRWIKNRFRCSFCDDSFTECHSLRDHVRICASQHTTTDAYKNFREMALINVDVSDAICRLCTTPFADLSQMRNHVAEHGFEFDDQHPDGVLPFILDKDCWKCFVCSEQFNNFLKMYKHMNIHYQHYICDACGKGFMTAYRLRKHSEVHNSGSFDCDLCGRIFSVRPARDAHKATAHRKGPRYECPQCNIRFVTYYDRMTHLKEMHSENDVVYQCTYCESTFKTSGSRATHIRNCHILPQRVHKCTSCPWKFKTSYELKRHMVRHALKGDNMCRCNICGPNNEAQSSVGAISKGRKLKENVSDRQMRRRRRANNELPEESEKRISKTMMRRNATILLECSTAWAFRWFHGAFYCSYCDLKVVEVQALREHIIVSHINELPSKRIFAKLTENNMVKIDVTDLRCRICNIPLNGIESLKYHIQSHGRSLNEGYNDGVLPFKLNDNGYRCQKCSCDFGTFSKINEHMNIHYQNYVCDTCGKGFVSKSRFRTHIHAGYNFYEKGSYPCGICAEIFSTRAERNTHRLKVHKKGVRYSCPRCLETFTSYNARVKHLLNYHAQNVHMFECDVCGKSFDTSSKRTAHYRSVHSTLEEQEKFKCRVDRIKTEDDPSSTNAPKILWKRRRKLLEDKANAALLIEYSNAIVFRWQRGKFMCAYCPNIYASIHEIRSHSVAHNRLDIFENPQVRQLFPLKVEITNLSCTVCDVPTSSIEILKVHLSKVHCKMIDPNYTDGIIPFYLTGKELKCVLCGLQFDKFMTLFIHMNKHYQSFVCDTCGKAYSGQNKLRSHQAMHETGEFKCTQCEIVLPNRIVRNRHMNDAHGPKNRYRCPICDVHFDSYHNRLRHLNVVHGEKTEYKCTYCPAVFISCTSRYSHINGVHMRKRKKKKKKDPEGSNITGDSQSQLTQLAKTHQKNNALTLLKLSNICPFNFRGNVFVCCCCDYSSEEFTAIRKHVNDHPNLLDTIKIACGIILKADVTDLQCKICSQSLEDISSLADHLIFIHDQSIEKQYGLGIMSFQNLGRKIYRCIHCDRFCETFGSLNNHMNSHYSNVQCPKCNKTFADYQRMKGHLFKRHKRPKKVDKRDNAILIMKYSNICPFKYRSSSFMCFYCKFASPQISKIRKHIKEHRDLVETIKLRSCVLLKADITNLTCEICSTGMTDIPSLVTHLIDVHDQPIDLRYGTGIMSFLLEDEGPSKCAHCELAFKHYLELNRHMNCHYANNVCSECGQTFADACKLATHITKVHSSKNDKLFQFMRDKEGSVTLTVKWRPIRKYNDERDNAAIILECSNICPFRWNRSVFCCSYCTLTSADFGQIREHTINHPNRIEALRRLRGLSIKADITDLKCELCLDSIKDISSLFDHLVEVHNKPLNKKYGPGVVPFLLDGDVFKCASCDLSFDLFINLNKHLNEHFANSICPLCGKSFSQDSRLKSHLLHSHKNGKQTHHSCSKCGETFVNLSDKEKHLRLKHGIMKHKCPYCSESFKTYTNRIKHMKELHDKKIEYRCGLCAASFLLCSQRTKHMKQVHVKDKRFACTVCHFRAVTAASLKNHMIKHGGERKYQCQVYYHRSLISKSKQEKCGSRENVAIILECSNMCPFLWRRNVYGCTICPFDSHNFAHCRHHYRTHLNKRDALKRARTPLSVKVEVSDLKCTVCYESVTDINSLVEHLITKHKKNIHRDLGICLRPFLLTDGFKCPNCSLTFVNFLSLSEHSNEHYPHFVCGECGKAFSNESNLRNHLDTHEKPAVVCPRCDEVFSSKSHLRIHAKDEHGLFPYKCPYCQVKCEGYAQRLRHMSERHGVSVTYPCSLCPMVCASSSARSKHVLRRHNTEKRLLCSTCGDVFVTATELRVHNMLKHQRQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-