Ladu004458.1
Basic Information
- Insect
- Ligdia adustata
- Gene Symbol
- -
- Assembly
- GCA_947049285.1
- Location
- CAMRIN010000105.1:1249580-1255438[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 33 0.0022 0.16 12.9 1.0 1 23 17 40 17 40 0.98 2 33 0.059 4.2 8.4 1.1 1 23 46 69 46 69 0.94 3 33 0.00017 0.012 16.4 0.4 1 23 73 95 73 95 0.96 4 33 6.3 4.5e+02 2.0 0.9 1 10 101 110 101 114 0.93 5 33 0.0043 0.31 12.0 1.7 3 21 151 169 149 170 0.90 6 33 0.44 31 5.7 0.0 2 23 191 213 190 213 0.94 7 33 0.05 3.6 8.6 0.0 5 23 274 293 271 293 0.91 8 33 0.87 62 4.7 0.9 2 23 312 334 311 334 0.94 9 33 0.016 1.2 10.2 0.5 2 23 358 380 357 380 0.95 10 33 0.002 0.14 13.1 0.1 2 23 385 407 384 407 0.94 11 33 0.033 2.4 9.2 0.4 2 21 412 431 411 432 0.93 12 33 1.5 1e+02 4.0 0.7 2 23 440 462 439 462 0.83 13 33 0.0033 0.23 12.4 1.1 2 23 470 492 469 492 0.95 14 33 0.003 0.22 12.5 0.9 2 23 498 519 497 519 0.95 15 33 3.9e-05 0.0028 18.4 0.2 1 20 525 544 525 547 0.94 16 33 0.18 13 6.9 0.3 2 23 638 660 637 660 0.94 17 33 5 3.5e+02 2.4 0.1 2 23 683 705 682 705 0.86 18 33 0.011 0.81 10.7 0.1 2 23 729 751 728 751 0.95 19 33 0.00021 0.015 16.1 0.2 2 23 756 778 755 778 0.96 20 33 0.025 1.8 9.6 0.2 2 22 783 803 782 803 0.95 21 33 0.81 58 4.8 0.5 1 23 810 833 810 833 0.85 22 33 0.00054 0.038 14.8 0.8 2 23 841 863 840 863 0.94 23 33 4.6 3.2e+02 2.5 0.4 1 11 868 878 868 882 0.84 24 33 0.0029 0.2 12.5 0.4 2 23 912 934 911 934 0.94 25 33 0.096 6.8 7.8 0.1 2 23 959 981 958 981 0.92 26 33 0.00046 0.033 15.0 0.3 1 23 1003 1025 1003 1025 0.98 27 33 0.019 1.3 10.0 0.7 1 21 1029 1049 1029 1050 0.94 28 33 1.2 82 4.3 0.7 3 21 1061 1079 1060 1080 0.89 29 33 0.0057 0.41 11.6 3.1 3 23 1089 1110 1087 1110 0.94 30 33 0.00067 0.048 14.5 0.7 1 23 1117 1140 1117 1140 0.93 31 33 0.0035 0.25 12.3 1.4 1 23 1145 1167 1145 1167 0.96 32 33 3.8e-06 0.00027 21.6 0.9 1 20 1173 1192 1173 1195 0.94 33 33 0.00032 0.023 15.6 6.0 1 23 1201 1224 1201 1224 0.97
Sequence Information
- Coding Sequence
- ATGGACGACAAACGCAAGCATATATCAGCTTCGAAACAATGCTGGGTATACAAGTGTAATATCTGCGATGAAAAATTCTTCTTGCCGTCTTTTAGGAATAGGCATTTGGAAACTGAGCACAATGCCGGCAAGACTTTCTCTTGCCCAGTTTGCGAACAGATGTTCTTTACTGCGGATAAAAGACGCTCGCATTTTTTATCTACTCACACTACGAAATACTTGTGCTCAATTTGCGAAAAAACGTTTCAAAGCCAGGATGCGCTAGATGAACACACTCGTTCTCATATTGCTGAAAGAGAATACAAATGTGGGGTATGCCAAAAAGATTTCTTACATAAGAGAGAAACGTCCTCCGACATCAGTGGGATCGAACGGATAAATGCTATTTTACTGATGAACCACGCTACTGCTTACCCGTTTGTGTTGCCGATGCATACCAATGGCATAACTTGTATCACGTGCGGGAGACAGTTCTGCACTCCAGAAGATTTCAGGCATCACATGCGGAACGAAGAAAATGTTCCGAAAATTAGCTTCAGGAACCCAATCAAAGTAGACATCACGGATCTTCAATGCCGTATTTGTTCACAAAAATTTGACGACATTCCCGGCGTCGCCGCCCATTTATCTACGGCCCATCAAATATCCAATATAGACTTGAAGCACGGATTTGATGTGCAACCTTTTAAAATAGCCAAACAAAGTCCCCCGTGCACGCAGAATCGGGTCATATCTGCCGAAAGAAGGAACTCGAAGATCGTGATACAGAATAGCACCATGTACCCCTTCAAAACGCCTCGCAGCAATATGGCTTGTATTTACTGTGACGAAGAGTTCGAGGACCCTCCTCTATTTCGACAGCATATGATGGAAAACCACGCGAACGCGAGTGCGCTCTATCCGCGCATGACTAAAGTAGATACTACTGATTTAAACTGTCGCGTTTGTTTTCGATCTTTCGACGATGTTCAATGTATAGCTGAACATCTGAAAACAGCACATAGGTTTGATAAGATAAATTTGAATAGCGGTTTTGGTCTTATTCCTTTTGTCCTGCCAAATAGGCAGTGGACGTGCGCTATATGTCATTTGAGAACGGCTACGCTTCGAGCCCTCAGCAAGCACATGACCATGGTCCATTTCTCCGCAGTGACTTGCGAAGAATGCGGCACTAACTTTGCAAATACTAGGTCACTGGAATTACACGTGGAATCGAATCATAAAAAAATCATAAGATGTAAAAAATGTAGGGAAGTGTTTGCCACTAGTGAAGATCGCAGCAAACATTACAAGGCTTCACGCTCGTGCTGGCAATCTGTGTGCCACATCTGCAATATGAGATTTATGAGTGATAATCCAAAAGAAAAACATTTGCAAGAAGTTCATAACGTTTATTCAAAAAACTTGACGTGCTCAGAATGCGGCGAGACGTTTCCAACCAATAAAGATTGCATTAAACATTTTAGAATCGCGCACACTGATGATAAGCTGTGTTGTGCATTTTGTCCTCAAATGTTTGTATCGAAAGCGCGACTTGTGCGGCACATGGTCACCCATACCAAGGAGAAACTGTTCCCTTGCAATGTTTGTGAAAAATCTTTTGGCAATCGAAGCGCTTTGAATCAACACATGTGGATACATCGCGAAGACAAACGCTTCAAATTATTTCAATTAAGAAGACTTCGTTTATTGTTTTTATGTGATGAAAATAAAGTCGTGGTGGTCACAGTAAAGAAGTGCATACATCCAGTTAAAATACCAAAATTCTATGATGTGGATTGTTTGTTCTTTTCTTTTGTTATAGAGCCGACGGCGGGTGTGCCTGTTAAAAAATCCAGCGCCAGAAGTAATGCCAAGATCATTATTCTGAATACCACCGCCTATCCGTTCAAACTACCCGCCAATAAAATGACATGCCGCTACTGCGATGAAGAGATTGAGGAACCTCAACTCTTTAGAAAGCATATGAAGGATAATCACTCTCAAAATCTAGCTATGCCCGAAGAACACTGTCAAGGACTCATTAAAGTCGACTGTACAGAGTTGATCTGTCGTCTCTGTTCTAAACCGTTCGATGACATTCAATCTATTGGGGAACATCTATTAAGTTCTCATAAATTGTTAAGGCTAGACTTGAGTATTGGATTTGGTTTGATTCCTTTCGTATTACCTGATCGCCAATGGACGTGTGCTCTTTGTGATATTAAGGCTAGCTCGCTCCGAAACCTCAGCAGACACATGACAATGGTCCACTTCTCCTCAGTCACTTGCGATGTTTGTGGCAAAAAATTCGCCAATTCTAGATCATTAGACTTACACGTAGAGACCAAGCACAAGAAAATAATCAAATGTAGGAAATGCAGGGTCGTGTTTCTCACATCAGAGGAGCTCAGACAGCACATGAGGGTATCTAATTCGTGCTGGAATTATGTATGCCAAGTGTGCAACGAGAGGTTCATGGAACACGGGCCTAAAGAAAAACATTTGCAGGATGTTCATAACATTGTTTCCGAAAATCTGACGTGTAATATATGCGGGGAAACTTTCTCCAACAGCAAGAAACGCAGGGTTCACTTTAAAATTGCACACACCGAGAACAAACATTGTTGTCCACTATGTCCACAAGTTTTTGCAGCTAAAGAACAAAATCCGCAGTACATCGTGCGGCGGAACGCCCACATCGTTATCGAATCTTCGACCGCGTATCCTTTCAAGTTACCGGAAAACTCAGTGGTATGCTTATATTGCTCCGAAGAGTTTGAGGACCCGGCTTGTTTCAGGCGTCACATGAACGACGACCATCAAGACTTTAAGATTTATTCCTCATTTTACAGCGTTACCGATTATTTTGTTAAAGTTGATACTACTGATCTTCGATGCAGGATTTGTTCCAAACCGTTTGACGAATTGGAAGACGTTGCGAAGCATCTCAGTGAGCAACACCAGAAAAGCGTAAGATTCGATCACGATCTCGGTATGATACCGTTTAAAATCGAGAAAGATCGATTCGAATGCGCATCTTGCGGTGTGAAATATGCTAATTTACGTCTACTAAGTAAGCATATGAACACGCATTATGTTAAATATACTTGTGAATCTTGCGGAAAGTCGTATTCAGCATCAGCCACTCTGAACTGCCATATAAGAAATTCTTGCGGTCGCTCCACTTCGCTTCCGTTCTGTCGGAGGTGTAAAAAGTCCTTTAACTCGGTTAAAGAGCGCATGGATCACCTAATGGTGTCGAAGCGATGCTGTCAGCACTTGTGTAACGTTTGCGGAGAAAGATTTCCCACTTGGTGCATGAAACAAACTCATATGAGGGAAACGCATAATACACCTATGAAATCTTACACCTGTCCAGAATGCGGAGCCGTATTTCACAACAACGAAAGACTCCGGACCCATTTTACAATAGAACACACGAAAAACCATTTTCAATGTACATTTTGCGAATTGAAATTCGCTTCAGAGTACACTTTTAAAAAACATGTCGTCGTTCACACTGGAGTGAAGATGTTCACATGTAATGTATGCTCCAAGTCGTTTTCACGACGATCCGGTTTACGGCAACATATGTGGATACATAGTGAAATCAAGAAACATTCGTGTAAGATTTGCGATAAACATTTTAATCAGAGAGTCAGTTGGAAAACTCATATGAAGTCACGACATCCTGAAATGTGTGATTTTTGA
- Protein Sequence
- MDDKRKHISASKQCWVYKCNICDEKFFLPSFRNRHLETEHNAGKTFSCPVCEQMFFTADKRRSHFLSTHTTKYLCSICEKTFQSQDALDEHTRSHIAEREYKCGVCQKDFLHKRETSSDISGIERINAILLMNHATAYPFVLPMHTNGITCITCGRQFCTPEDFRHHMRNEENVPKISFRNPIKVDITDLQCRICSQKFDDIPGVAAHLSTAHQISNIDLKHGFDVQPFKIAKQSPPCTQNRVISAERRNSKIVIQNSTMYPFKTPRSNMACIYCDEEFEDPPLFRQHMMENHANASALYPRMTKVDTTDLNCRVCFRSFDDVQCIAEHLKTAHRFDKINLNSGFGLIPFVLPNRQWTCAICHLRTATLRALSKHMTMVHFSAVTCEECGTNFANTRSLELHVESNHKKIIRCKKCREVFATSEDRSKHYKASRSCWQSVCHICNMRFMSDNPKEKHLQEVHNVYSKNLTCSECGETFPTNKDCIKHFRIAHTDDKLCCAFCPQMFVSKARLVRHMVTHTKEKLFPCNVCEKSFGNRSALNQHMWIHREDKRFKLFQLRRLRLLFLCDENKVVVVTVKKCIHPVKIPKFYDVDCLFFSFVIEPTAGVPVKKSSARSNAKIIILNTTAYPFKLPANKMTCRYCDEEIEEPQLFRKHMKDNHSQNLAMPEEHCQGLIKVDCTELICRLCSKPFDDIQSIGEHLLSSHKLLRLDLSIGFGLIPFVLPDRQWTCALCDIKASSLRNLSRHMTMVHFSSVTCDVCGKKFANSRSLDLHVETKHKKIIKCRKCRVVFLTSEELRQHMRVSNSCWNYVCQVCNERFMEHGPKEKHLQDVHNIVSENLTCNICGETFSNSKKRRVHFKIAHTENKHCCPLCPQVFAAKEQNPQYIVRRNAHIVIESSTAYPFKLPENSVVCLYCSEEFEDPACFRRHMNDDHQDFKIYSSFYSVTDYFVKVDTTDLRCRICSKPFDELEDVAKHLSEQHQKSVRFDHDLGMIPFKIEKDRFECASCGVKYANLRLLSKHMNTHYVKYTCESCGKSYSASATLNCHIRNSCGRSTSLPFCRRCKKSFNSVKERMDHLMVSKRCCQHLCNVCGERFPTWCMKQTHMRETHNTPMKSYTCPECGAVFHNNERLRTHFTIEHTKNHFQCTFCELKFASEYTFKKHVVVHTGVKMFTCNVCSKSFSRRSGLRQHMWIHSEIKKHSCKICDKHFNQRVSWKTHMKSRHPEMCDF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -