Ladu013857.1
Basic Information
- Insect
- Ligdia adustata
- Gene Symbol
- -
- Assembly
- GCA_947049285.1
- Location
- CAMRIN010000391.1:632268-633758[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.5e-09 2.5e-06 27.5 0.0 2 41 32 72 31 73 0.91
Sequence Information
- Coding Sequence
- ATGAAATGTTTTTTTTTTCAGGTGCAAtatgcctcgaaaaaaaatataaaagagccaggtgtgcgtaaatatggcaccatatcaaattacacgcaggagatgttggatgacgccatatataaaataagatctggtgcattaagccaaagaaaagcatgtaaaattaatAAAATACCTAAAAGCACTATTAATCTTAAACTTAAAAATAAACATAACAAACCTGTGGGACGTCCTACATGCTTGACGATGGACGAAGAGATTATTTTTAGAGACCACTTGCTAGCGCTAAGTGACTTGGGTATTCCAATTGGCTTACAAGATTTTAGAGATGTAGTTAAAAGATACTTGGATAACATTAGGAAAACAGTTCCTGTGTTCAAAGACAACAGCCCTGGATATGAGTGGGCAAAACTTTACATGGAACGGCAACCAGCCATAAAAGAAAAAATTGCTCACAAGATCTCCAGGAAACGCGCTCAAGTAAATGAAGACATGGTGAACGAATTCTTCGACAGGCTTGAAAAAGAGATGGAAGACGTTAGCCCTGACAATATATATAATATGGACGAAAGCGGATTCCATGATGACCCTGGAAAAAAAAAACTTTTATTCAGACGTTCCACTCGCCACCCTGAACAGGTGAAAAATTCCAGTAAATCTTGTTTTACCATAGTATTTGCTGGGAATGCTATTGGAGACATCATCCCTCCATTCTTCATATTTAAAGGGAAACATTGTTGGTCCGACTGGCTTGTTAATGCCCCAAAGTCTTCAAAAATGGCTGTTTCAAAGTCTGGCTGGATAGATGCTGATATTTTCGAAAAATGGCTAGAAAAACATTTTGTGCCAATTGTTGACCAAAAAGAAGGAAAGAAAATTCTTATATGTGACAATTTAAGTGCACATATAAGTGTAAAAGCTCTTAAGATCTGTGAAGAACACAATATCAAATTCATATGCCTCATACCCAACTCGACACATATCCTACAACCCTTGGATGTAGGATATTTTTCATCTCTAAAGTCAGCTTGGCGAACAGTGCTCAACAAATGGCGTCAAACAGAACGAGGAAGAAAAGCTGGAGCACTACCTAAAAACGTGTTCTGCCAGCTTGTCAATTCAGCGCTTCAACTGAATGAATCCACAGCAGGGATTAATATGATAGCAGGATTCAGAAAATGTGGTATTTTCCCATGCTCACGTATTGAAGTCCTACAAGTGTTACCTTCGTACGCAACTGGCCACATCCAAGCTACTGTTGGGGACATATTTAAGGAATACTTGCAAGAAATAAGAGCGGCGGACTTAAATATAAAAACAACCAAGAAATTCCAGCTGCCAGTTAAAGCAGGAAAGTCAATTTCCGCCGAAGAAGTGGAAAATTTTTATAAAAACAGACAGAAAGAGCAGGAGAAGAAAAGGGAAAATCCTGTAAAAAAGGAAGGCCCAAAGGTTCTAAAAACAAAAAAACCACGAAGAAATCGGAGGTAG
- Protein Sequence
- MKCFFFQVQYASKKNIKEPGVRKYGTISNYTQEMLDDAIYKIRSGALSQRKACKINKIPKSTINLKLKNKHNKPVGRPTCLTMDEEIIFRDHLLALSDLGIPIGLQDFRDVVKRYLDNIRKTVPVFKDNSPGYEWAKLYMERQPAIKEKIAHKISRKRAQVNEDMVNEFFDRLEKEMEDVSPDNIYNMDESGFHDDPGKKKLLFRRSTRHPEQVKNSSKSCFTIVFAGNAIGDIIPPFFIFKGKHCWSDWLVNAPKSSKMAVSKSGWIDADIFEKWLEKHFVPIVDQKEGKKILICDNLSAHISVKALKICEEHNIKFICLIPNSTHILQPLDVGYFSSLKSAWRTVLNKWRQTERGRKAGALPKNVFCQLVNSALQLNESTAGINMIAGFRKCGIFPCSRIEVLQVLPSYATGHIQATVGDIFKEYLQEIRAADLNIKTTKKFQLPVKAGKSISAEEVENFYKNRQKEQEKKRENPVKKEGPKVLKTKKPRRNRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00825530;
- 90% Identity
- iTF_00825530;
- 80% Identity
- -