Basic Information

Insect: Ligdia adustata
Gene Symbol: -
Assembly: GCA_947049285.1
Location: CAMRIN010000903.1:22862-25501[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.3e-09 4.1e-07 30.0 0.0 3 38 15 51 13 57 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.3e-09	4.1e-07	30.0	0.0	3	38	15	51	13	57	0.84

Sequence Information

Coding Sequence: ATGGAGAAGAATAAAAAATATGTTCGGTTCCAATATTCTGAGAAAGATCTGGAGGACGCTTGTCGTGATGTTGTCTCTGGAATTTTATCACTTAACAAAGCACATAAACATTATAATATTCCTAAATCTACTCTGCACAATAAAATAAATCAAAAAGTGCCAATGCAACGAAAATTGGGACCTTGTACACAACTAACACAAGCCGAAGAAAACGAATTATCAAAATGGATAATAAAAAAAGCAAAAAGTGGTTTTCCTATGCATCCTGAAGAGTTGCAACTAACTGTAAAAAAATATTTGGACTCAAACGATAGGAAATCGACTTTCATTGATAATAAGCCGGGGCGTAAATGGCTACAATTATTTCTTACCCGGCATCCCGAAATAAGCAAACGAAATGCTGAAGTAATTTCCAGGGCCCGTGCATCCGTATCAGAAACTTCCATACGGAAATGGTTTGAAGAATTAAATAACTTTTTAAAAGAAAACGAAGCTGATGACGTCATGAATCACCCAGAGCGTATTTTTAATGCCGATGAAACGGGTGTACAAATGTGTCCGAAATTTGGAGCAGTACTAGCACCCAAAAATTACAAAAACTCTTACCAAATCGCGACGGGAAAAGAAAAAGAACAAGTAACTGTCCTATGCAATGTATCCGCTAATGGCGAATCAGCACCACCCATGCTTGTTTATCCTTATAAAAGAATACCACGGGATATTATCAACTCTGTCCCGGACGAATGGGGTATTGGTCGTTCTGATTCGGGGTGGATGATATCAGAAACGTTTTTAGATTATGTGAAAAACGTTTTTCATCCTTGGCTCATTCAAAACAACATTGCATTGCCAGTTATCATGTTTCTGGATGGACACAAATCCCACATCAATAAAGAGCTTTTCGAATATTGCACAGAAAATAAAATATTGCTGTATTGTTTGTTCCCAAACGCAACTCATATTCTACAGCCTTGTGATGTATCATTTTTCAAGTCGTTAAAAAATGCCTGGAAAGATGCTGTGAGAAACTTTAAAGCTGAAAATCCGACGAAAGTATTGAAACGATCTAATTTCGCAAGCGTTTTTAAAATTGCGTACAACAGCAGCATCTCAAAGACGGAAGTCATTTCTAATGGCTTCAGAAAATGTGGACTATATCCTTTAGATCCAAACTCCGTAGACTACACAAAATGTGTTACATCACATCAAGTTGCTGGAGAACAAGTAACAGGTACGGATGCCGGTAATGCTGATGTTCAAACTGTACAACCTGATGTCTTATGCGATTCAGATGTCCACAGTACCATTAAAGTTATTGAACATTTGACAACAGACTCTGTCATAGAAGAATTCAATGCTTTGAGAGACGAAAATAAAAGTCACGATCATCCGTATTTTTCCTTGTGGCTTTTTTGCAAAACTTATCTTGCGTCAAAAGACTTGACTGTGCCATTGACAAATGTATGCTCGGTAATAGACCATCATAACGTTTTATCAGAAACTGGTAATTGCCCAAAAACTAATGTTACCGGATTTGATGCAATTTTTGACGGGATTAATAGTCCGATGGACAGAAATATAACTGGATTAGAATTGGAAGCAATACTTAATGATGAAAATTTGACATTTGAATTTCGCGAAGATAATTCCGTAATTACAAATAATGAGCCAATACAGAAATCAGATACGACAATCACAGAATCGCATGGCAATGCCATGATTGTTGGAAGTTCTGCAAGTGACTCTGATGTGACAAACGCCTCATTTCATGAAGAACAAATGGCTAACGATGTAGAAAATGATCCATCACTGCTTAACACAGATGAGGTGATTACGAAATCTCGGGATGACGTTTCCGTGAACGTAAGCATAAATAAGGAATCTAAAACTGCCCAAGGCATTGAAACTTTCTTAACAATCCCCATTTTAAATAAAAAAACCCAAAAAAGAAAAACAACAATAATGCCATATGGTATTACTTCATCAAAAATGAAAGACTATTTTAATGAACAAGACGCAAAGAAAAAAGAGAAAGAAGAAAACATTCAAAGAAAAAAAGCACTTAGACTAGAGAAAGTATTAAAAAAGGAGGCAAAAGAAACTGTACTTCGGAAAAAAAACAGGCGACCAAATAAACCAAAACTTGAAATAACAACTGACAAAGAAACAGAAGAAAACGGGGTTGATAGCATCATTTTGAATAATGATGGCGTAGATTTTGAAACTAGTAAAGAATTGAGAAAAAATAGCACCATTGATAAAAACGATCTCACATCAGAAACTAAGCCAACCAAATGGGAAGCTACAGAAGTAAACAATAAACAGATTTGTTCAGGAACAAAAGTCAAATTTTCTGACGTTTCTTTTGATTCTTACGTTTTAGTTAAATTTGAAGAAGCGAGGTCCACAAAACTGTTTGCAGGAAAAGTCCTCATGGTCAATGATGATGAAAAAAAAATTAAAGTTGATTTTTTAAGAAAGAAACGACAGAAGAGTACCGAATGTGAACTTTTTGTGTATCCACAAGTAAAAGACGTATACGAGATACACATCGAATCAGTTGTGGATATTCTCATAGTTAAAGACACGACTCGACGAGGAGAAATAATTTTCACCAAAGATTTGAAAAATGTGCAATGA
Protein Sequence: MEKNKKYVRFQYSEKDLEDACRDVVSGILSLNKAHKHYNIPKSTLHNKINQKVPMQRKLGPCTQLTQAEENELSKWIIKKAKSGFPMHPEELQLTVKKYLDSNDRKSTFIDNKPGRKWLQLFLTRHPEISKRNAEVISRARASVSETSIRKWFEELNNFLKENEADDVMNHPERIFNADETGVQMCPKFGAVLAPKNYKNSYQIATGKEKEQVTVLCNVSANGESAPPMLVYPYKRIPRDIINSVPDEWGIGRSDSGWMISETFLDYVKNVFHPWLIQNNIALPVIMFLDGHKSHINKELFEYCTENKILLYCLFPNATHILQPCDVSFFKSLKNAWKDAVRNFKAENPTKVLKRSNFASVFKIAYNSSISKTEVISNGFRKCGLYPLDPNSVDYTKCVTSHQVAGEQVTGTDAGNADVQTVQPDVLCDSDVHSTIKVIEHLTTDSVIEEFNALRDENKSHDHPYFSLWLFCKTYLASKDLTVPLTNVCSVIDHHNVLSETGNCPKTNVTGFDAIFDGINSPMDRNITGLELEAILNDENLTFEFREDNSVITNNEPIQKSDTTITESHGNAMIVGSSASDSDVTNASFHEEQMANDVENDPSLLNTDEVITKSRDDVSVNVSINKESKTAQGIETFLTIPILNKKTQKRKTTIMPYGITSSKMKDYFNEQDAKKKEKEENIQRKKALRLEKVLKKEAKETVLRKKNRRPNKPKLEITTDKETEENGVDSIILNNDGVDFETSKELRKNSTIDKNDLTSETKPTKWEATEVNNKQICSGTKVKFSDVSFDSYVLVKFEEARSTKLFAGKVLMVNDDEKKIKVDFLRKKRQKSTECELFVYPQVKDVYEIHIESVVDILIVKDTTRRGEIIFTKDLKNVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -