Ladu013933.1
Basic Information
- Insect
- Ligdia adustata
- Gene Symbol
- -
- Assembly
- GCA_947049285.1
- Location
- CAMRIN010000391.1:1032588-1038685[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-09 3.8e-07 30.1 0.0 1 41 22 63 22 65 0.93 2 2 1.2e-09 3.8e-07 30.1 0.0 1 41 348 389 348 391 0.93
Sequence Information
- Coding Sequence
- ATGGCCAAAACAACGAGAAAAAAAAGCCGAAGACGTATAGGTGCACGACCGTACAAAAACTACACTAATGAGATGTTGGACTTGGCGGTACAATATATAAAAGAAAAAAAAATGTCTTCAAGAGAAGCCGAACGCCAGTTCGGCATACCGCGACGCACGTTATTAAACAAACAAAAAGAGAATCACCCAAAAAATGTAGGGAAACCTACATTGTTATCCGAAGAAGAAGAGGAAAACATTGTTAAAGTTATAGTTGCAGCAGCGGACTTTGGTTGTCCTCTAACGAAGCTGGATTTAAGGCTGGTAGTCCATGATTATTTAAAAAAAAATGGTCGTGACGAAATCTTTAACAATCAACCTCCCGGAAAGCAATGGGTAGAATGTTTCATGGAAAGGCATAAATCAAAACTGACAACGAGAAGCTGTCAAAATATAAAATTGGCTAGAGCGGAAAAAACAGTGGACGAATTCCTTGAATATTTTAACAATTTGGAAGAAACACTCAAAGATATTCCTTCAACACATATATTAAATTTGGATGAAACCAATTTGAGCGATGATCCGGGCGTATCCAAATGCATTTTTAGGAGAGGAGTTAAATATCCTGAGCGGGTTTTGAATTCGTTCAAGAATTTGGAGGATGTCAAAATTTCACCAGTAATCGGAAAAGATTTTCTGGTCGTAGACAGTGGAGGGCAAAATAAGATTTTGATTTTTATCGTTGTGGAAAAAAGCACAACAGACCGGAATAGTAAATGTTCCCGGTGGAAAAAAAAAATTTCTATGTGTGCACATCTTCCAAAAACTTTTATTACGGGAGCATGGGTGTCACTATTAGAAAGTGCACCTGAAGGCAATGAGGCCAAATTGTTTAATGAATATGTAACGTCGCAGTGGATGAACAAAAATATCGATTTGATTTGTTGTTACAAAGAACGTCACAGAACAACGAACCCAGTAGAGGGATGGCATAACAGGATGGCCAAAACAACGAGAAAAAAAAGCCGAAGACGTATAGGTGCACGACCGTACAAAAACTACACTAATGAGATGTTGGACTTGGCGGTACAATATATAAAAGAAAAAAAAATGTCTTCAAGAGAAGCCGAACGCCAGTTCGGCATACCGCGACGCACGTTATTAAACAAACAAAAAGAGAATCACCCAAAAAATGTAGGGAAACCTACATTGTTATCCGAAGAAGAAGAGGAAAACATTGTTAAAGTTATAGTTGCAGCAGCGGACTTTGGTTGTCCTCTAACGAAGCTGGATTTAAGGCTGGTAGTCCATGATTATTTAAAAAAAAATGGTCGTGACGAAATCTTTAACAATCAACCTCCCGGAAAGCAATGGGTAGAATGTTTCATGGAAAGGCATAAATCAAAACTGACAACGAGAAGCTGTCAAAATATAAAATTGGCTAGAGCGGAAAAAACAGTGGACGAATTCCTTGAATATTTTAACAATTTGGAAGAAACACTCAAAGATATTCCTTCAACACATATATTAAATTTGGATGAAACCAATTTGAGCGATGATCCGGGCGTATCCAAATGCATTTTTAGGAGAGGAGTTAAATATCCTGAGCGGGTTTTGAATTCCACAAAAGGTGCTATTTCATTGATGTTTACAGCAACAGCTGCTGGCCAAGTTTTACCTACTTATGTAGTATACAAAGCTGAATGTCTTTATTCTGAATGGATTTCTGGAGGCCCTCGAGATACGCGCTATAATCGAACAACGTCAGGATGGTTCGATTCCGCCACTTTTGAAGAATATTTTAAGACAGTTGTCGTACCATGGGCAGACAGTTTACCTGGAAAAAAGGTGGTTATATGTGACAATCTATCCAGTCATATCAACGTCACCGTTATTAAGCTTTGCGAGGAACACAATATATCTTTCGTATTTATACCCACGAACTCCACACATCTTACACAGCCTCTTGATGTAGCTTTTTTTGCTCCCCTAAAAAAGGCTTGGCGAAAAGTCCTACTTGAATACAAAATGGAAAATCCTAATCAAACTGCTTTAAATAAAAAACATTTTCCAAAAATGTTGAAAAATTTGATTAATAGTATAAAACTGAAAGAGGCCAAAATTATCCAAAGTGGGTTCAAAGCCACCGGAATATTTCCATTAAACCCACGTCAAGTTCTTCAGCGAATTCCTGAGTTTGCTGACAATATTGGAAATTATAGTATAGATTCTACATTACTGGATTATTTAAAAAATGTGCGACAACCGAAGCCAGTCTCTGTAAGTCGTAATAAAAAAGTGACCGTAGAACCTGGAAAATCAGTAACGATTGATGATTTCTATCACATTCTAAGAGAGAAAGAAGCAGCTGTTGCAAATAAGAAATCACAGAAAAAAAAGAATACGGGGGTGAAAAAAAACAAAAATAAAAAAAATCAAAAGAAAAAGAATGAAAATGAACAAGAGTTGTCGCAACTCATTGATGCTAACGAACTTATACCAAGTGATGGTAAAATGGTAAATAACATTGATCATAACAACTGTTCTGATATTTTTCCAGAAGAAAACTATTTAGTCGATCAGTTTTTTGGGCAAGATGTCGTAACCAAACTTCTCGACTATAAAGACATTACCGAGCATCACAACACAGAAGTTACAAACAAAGAGTTAAAAAATAACTACAAAGAAATCGGTGTTTACCTGTCAGACGATGAAACGATGAGTATTATAAAACCAGACCAAAATAATGAAATGAGTTTTTTGGACGAAGTAAATGCTGACAACAAGATAACTTGTCCCGAAAAAGTAAACAAAATTAAAAAACTTCTAAGCGGAGCAGACATTATAAGACATTCAGCTCTGCAGATGAAATTAGCTCCTATGAAAAAACAAAAAGGAGTAAAACATGAAGTTAATATTTATGAAAAAAATACTAATGATGAACCGAGTACATCAATTGACGCAACAAGAAAACGTAAACAAAATGATTCTAAAAATTCAGAGAGACAAAGAGTTCAGAAGAAAGTGACAAAATGCAATGTTTTTACAAAAGATGGTACTGCAAGAAAAGAAAGACCAGAAGTAAGCAATAAGGTAACGAAGCGTGAAGAAAAGGCAACATCAAAGAAGAGGGCTGTAAAAAAGAAGAGAAACTTTAAAATAGAAACAAGCTCCGAAATTTCAGATACTATGAGCATAGCAAACACAGAAGATTCATTTGATGGAACATTTGATGAATATCTCACGGCTTTTTGTGAAGAACAAAACGGGAAAGAAAATATGGATCCAGAATCAGATGTTGTTGTACCATTTGGGTGCAGCGACATTCTATACTGCGCAGATAATAACTACTATAAAGATGATTGGATTGTTGCCAAGTTTGCAACGAAGAAGAGTCTGAAACACTATGTCGGACGCATTTTAAGAGTGAACATAGATGATGTATGCGAAATGAACCACCCAGATGATATTCTTCTGATTTTACCTAAACCAAATATTTCTCGGCGCGGACAAATAATTTTTAACATAAATTTATGTGATTACAACATTCAATAA
- Protein Sequence
- MAKTTRKKSRRRIGARPYKNYTNEMLDLAVQYIKEKKMSSREAERQFGIPRRTLLNKQKENHPKNVGKPTLLSEEEEENIVKVIVAAADFGCPLTKLDLRLVVHDYLKKNGRDEIFNNQPPGKQWVECFMERHKSKLTTRSCQNIKLARAEKTVDEFLEYFNNLEETLKDIPSTHILNLDETNLSDDPGVSKCIFRRGVKYPERVLNSFKNLEDVKISPVIGKDFLVVDSGGQNKILIFIVVEKSTTDRNSKCSRWKKKISMCAHLPKTFITGAWVSLLESAPEGNEAKLFNEYVTSQWMNKNIDLICCYKERHRTTNPVEGWHNRMAKTTRKKSRRRIGARPYKNYTNEMLDLAVQYIKEKKMSSREAERQFGIPRRTLLNKQKENHPKNVGKPTLLSEEEEENIVKVIVAAADFGCPLTKLDLRLVVHDYLKKNGRDEIFNNQPPGKQWVECFMERHKSKLTTRSCQNIKLARAEKTVDEFLEYFNNLEETLKDIPSTHILNLDETNLSDDPGVSKCIFRRGVKYPERVLNSTKGAISLMFTATAAGQVLPTYVVYKAECLYSEWISGGPRDTRYNRTTSGWFDSATFEEYFKTVVVPWADSLPGKKVVICDNLSSHINVTVIKLCEEHNISFVFIPTNSTHLTQPLDVAFFAPLKKAWRKVLLEYKMENPNQTALNKKHFPKMLKNLINSIKLKEAKIIQSGFKATGIFPLNPRQVLQRIPEFADNIGNYSIDSTLLDYLKNVRQPKPVSVSRNKKVTVEPGKSVTIDDFYHILREKEAAVANKKSQKKKNTGVKKNKNKKNQKKKNENEQELSQLIDANELIPSDGKMVNNIDHNNCSDIFPEENYLVDQFFGQDVVTKLLDYKDITEHHNTEVTNKELKNNYKEIGVYLSDDETMSIIKPDQNNEMSFLDEVNADNKITCPEKVNKIKKLLSGADIIRHSALQMKLAPMKKQKGVKHEVNIYEKNTNDEPSTSIDATRKRKQNDSKNSERQRVQKKVTKCNVFTKDGTARKERPEVSNKVTKREEKATSKKRAVKKKRNFKIETSSEISDTMSIANTEDSFDGTFDEYLTAFCEEQNGKENMDPESDVVVPFGCSDILYCADNNYYKDDWIVAKFATKKSLKHYVGRILRVNIDDVCEMNHPDDILLILPKPNISRRGQIIFNINLCDYNIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -