Ladu012537.1
Basic Information
- Insect
- Ligdia adustata
- Gene Symbol
- -
- Assembly
- GCA_947049285.1
- Location
- CAMRIN010000343.1:370717-378522[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.1e-10 6.9e-08 32.5 0.0 4 39 159 195 156 199 0.90 2 4 1.7e-10 5.6e-08 32.8 0.2 4 39 213 248 210 251 0.90 3 4 2.8e-15 9.1e-13 48.1 0.2 2 45 266 310 265 310 0.96 4 4 1.5e-17 4.8e-15 55.4 0.0 1 41 317 358 317 361 0.94
Sequence Information
- Coding Sequence
- ATGCCCGGGAACGCACCGTTTCAACTAAAATGCGAGCCACCTTCCGACGAAGAAGATAATTGCCCGCAACTATCCGACATATTCCCCGGTAATAAGTCGGCAAGCGGTCTGGAGGAGTTATCGCTGGCACCTCCGCCGGCCGCCCCTGCCGCGACCCCTGTGTGCGTGAAGCAGGAACCTGTCGACTGCCCCACAACCCCCGCGCTCACGCTGGAGACCCTCGAGTCCTCTCCACATACAATTCATAATATAATTATAACAATAACTTATCACTGTCAGGGAAACTCAATAATGGAGAGGCACATAGCGATGATGAATTCTAAAGAGCTTGACTCCGGCAGTTTTACACCGCTGCTCATCAAGGATGAACCTTCCACAGAAGTAGAATTCCAACACCTGAGCAGTGACGAGACGAGCGAGGGTCGCGAGGTGGAGCTAGCGACGCGAGGGAGCCCTAAGAACTGGACCCAGCGAGACATGGAGCATGCGCTCGATGCGCTGAGGAACCATAACATGAGTTTGACCAAGGCATCAGCAACATACGGCATTCCATCGACCACTCTTTGGCAGCGCGCGCACAGGCTCGGCATCGACACACCCAAGAAGGAAGGCAGCGCCAAGTCGTGGTCAGAGTCAGACCTACGGGGGGCGCTGCACGCGCTGCGGGCAGGTGCCATATCGGCTAACAAGGCTAGCAAGGCTTACGGTATACCAAGCAGCACGCTGTACAAGATAGCTCGTCGGGAAGGCATTAGGCTGGCGGCTCCGTTCAACGCAGCACCTGTGTCGTGGAGACGTGGGGACCTGGCGCGAGCGCTGGCCGCCATCCGCGCCGGCGCAGCCTCCGTCCAGCGAGCCGCCGCTCAGTATGGAATACCTACTGGAACTCTGTACGGGCGATGTAAGCGAGAAGGAATAGAACTGTCCCGGTCCAACCCCACACCCTGGTCAGAAGACGCAATGGGAGAAGCCTTAGAAGCGGTCAGGGTTGGACAGATGTCGATAAATCAAGCAGCTATTCATTACAACCTGCCCTACTCGTCTCTATACGGACGATTCAAGAGATGTAAATATTTGACTCAGGCACAGACAACGCCTCAGCAAGAGATCCCCGGAACATCTGAAATTCCGTCCCTTCAACAACACCAGCAAGACTTACCCTACTACCAAGCGCAGGTGCCTGAACAAGACCAGATCATCCAGAACTATTCGCAAAACGAGTACATTCACCATACATCGCCACACAACAACCTCGTTATACAAGACCCGTACGCTGCCGGGCCAGCGATGTATTACAACCAAAACTTTAATAGCATCGCAACCAGCTGA
- Protein Sequence
- MPGNAPFQLKCEPPSDEEDNCPQLSDIFPGNKSASGLEELSLAPPPAAPAATPVCVKQEPVDCPTTPALTLETLESSPHTIHNIIITITYHCQGNSIMERHIAMMNSKELDSGSFTPLLIKDEPSTEVEFQHLSSDETSEGREVELATRGSPKNWTQRDMEHALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSAKSWSESDLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVSWRRGDLARALAAIRAGAASVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYLTQAQTTPQQEIPGTSEIPSLQQHQQDLPYYQAQVPEQDQIIQNYSQNEYIHHTSPHNNLVIQDPYAAGPAMYYNQNFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -