Lnig032438.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- -
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010003780.1:11491-14400[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00043 0.031 15.9 0.1 1 23 23 45 23 45 0.98 2 15 1.2 88 5.0 0.0 9 23 95 109 93 109 0.94 3 15 1.2 88 5.0 0.0 9 23 159 173 157 173 0.94 4 15 1.2 88 5.0 0.0 9 23 223 237 221 237 0.94 5 15 1.2 88 5.0 0.0 9 23 287 301 285 301 0.94 6 15 1.2 88 5.0 0.0 9 23 351 365 349 365 0.94 7 15 1.2 88 5.0 0.0 9 23 415 429 413 429 0.94 8 15 1.2 88 5.0 0.0 9 23 479 493 477 493 0.94 9 15 1.2 88 5.0 0.0 9 23 543 557 541 557 0.94 10 15 1.2 88 5.0 0.0 9 23 607 621 605 621 0.94 11 15 1.2 88 5.0 0.0 9 23 671 685 669 685 0.94 12 15 1.2 88 5.0 0.0 9 23 735 749 733 749 0.94 13 15 1.2 88 5.0 0.0 9 23 799 813 797 813 0.94 14 15 1.2 88 5.0 0.0 9 23 863 877 861 877 0.94 15 15 1.2 88 5.0 0.0 9 23 927 941 925 941 0.94
Sequence Information
- Coding Sequence
- ATGGTATTTGGAAAGAAAAATAGATTATCATTCCACCGGGCAACAGTGCACTCGGTGACTCCTGGATTTGTGTGCCGGATTTGTCCCGAGTTGTTCGCTACGCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTTGTGTTCGCTACGCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACAAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACGCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCAAGTGCATCAAGCTATGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACGCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACGCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACGCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACGCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACTAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACGCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACGCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACGCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCACGCCCCACAAGTGTGGTGTTCGCTACGCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACTCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTGTTCGCTACGCCTCAATATCTCCGAGTGCATCAAGCTACGCACACCAAGCCCCACAAGTGTGGTAG
- Protein Sequence
- MVFGKKNRLSFHRATVHSVTPGFVCRICPELFATPQYLRVHQATHTKPHKCGVRYSSISPSASSYAHQAPQVWCSLLLNISECIKLRTPSPTSVVFATPQYLRVHQATHTKPHKCGVRYSSISPSASSYAHQAPQVWCSLLLNISECIKLRTPSPTSVVFATPQYLRVHQATHTKPHKCGVRYSSISPSASSYAHQAPQVWCSLLLNISECIKLRTQSPTSVVFATPQYLRVHQATHTKPHKCGVRYASISPSASSYAHQAPQVWCSLLLNISKCIKLCTPSPTSVVFATPQYLRVHQATHTKPHKCGVRYSSISPSASSYAHQAPQVWCSLRLNISECIKLRTPSPTSVVFATPQYLRVHQATHTKPHKCGVRYASISPSASSYAHQAPQVWCSLRLNISECIKLRTPSPTSVVFATPQYLRVHQATHTKPHKCGVRYSSISPSASSYAHQAPQVWCSLLLNISECIKLRTPSPTSVVFATPQYLRVHQATHTKPHKCGVRYSSISPSASSYAHQAPQVWCSLLLNISECIKLRTPSPTSVVFATPQYLRVHQATHTKPHKCGVRYSSISPSASSYAHQAPQVWCSLRLNISECIKLRTPSPTSVVFATPQYLRVHQATHTKPHKCGVRYSSISPSASSYAHQAPQVWCSLLLNISECIKLRTLSPTSVVFATPQYLRVHQATHTKPHKCGVRYSSISPSASSYAHQAPQVWCSLRLNISECIKLRTPSPTSVVFATPQYLRVHQATHTKPHKCGVRYSSISPSASSYAHQAPQVWCSLLLNISECIKLRTPSPTSVVFATPQYLRVHQATHTKPHKCGVRYSSISPSASSYAHQAPQVWCSLRLNISECIKLRTPSPTSVVFATPQYLRVHQATHTKPHKCGVRYASISPSASSYAHHAPQVWCSLRLNISECIKLRTPSPTSVVFATPQYLRVHQATHTKPHKCGVRYASISPSASSYAHQAPQVW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -