Lnig009330.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- -
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010000734.1:44596-46227[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.7 1.2e+02 4.6 0.2 1 23 88 110 88 110 0.88 2 14 0.0016 0.12 14.1 0.0 1 23 115 137 115 137 0.97 3 14 0.2 15 7.5 0.5 1 23 143 165 143 165 0.97 4 14 0.45 32 6.4 3.9 1 23 170 192 170 192 0.98 5 14 0.012 0.83 11.4 2.3 1 23 198 220 198 220 0.97 6 14 0.43 31 6.5 3.5 1 23 226 249 226 249 0.97 7 14 0.00075 0.053 15.2 2.1 1 23 255 277 255 277 0.98 8 14 0.0058 0.42 12.3 1.4 2 23 279 300 278 300 0.97 9 14 1.8 1.3e+02 4.5 4.3 1 23 334 356 334 356 0.98 10 14 2.2 1.5e+02 4.3 1.8 1 23 384 406 384 406 0.97 11 14 0.058 4.1 9.2 0.1 1 23 412 434 412 434 0.97 12 14 0.029 2.1 10.1 1.3 1 23 436 458 436 458 0.98 13 14 0.0057 0.4 12.4 0.7 1 23 464 486 464 486 0.96 14 14 0.83 59 5.6 2.2 1 23 519 541 519 541 0.92
Sequence Information
- Coding Sequence
- ATGGACCAACGCGACATTGTGCAGACAGAGACAGAAGATATTGACGTCATCAATGTGTCTACTTCTACGAGCATCCCAGCATTGGAAGACGATTTAAACCAGCACGAAGTTCAGAACATCGACGAGATTGATGTGGTCAATTTCACATCAGAAGGAGACGAAGTCAATCTTCCAAGTACATCAAAAGGACATAATGCCATTATCAACCAGGACAAGGATCCTCGCAATGGATCAAGACAAGATCCTGCGAATGGCTTGACGTTCTCTTGCAATGAATGTAAGTACAAGACTGAATCGGGCCCGATGATGGCCGAACATTTGCTACAACACCCCCGATGTAACTACAAATGCGGCCTATGTGACGCCGTGTTTTCCTCAGAGGTCAATGCATCCAGACACTTGCTCGCGCATTCAAGTGAGTGGCTGTATGCTTGCGAGATTTGCACTTTCAAATCAAAAACCTGGAAGCGCATGATCAGCCACGGTCTGACCCATTCCAAAAATATGTTTAGTTGTAGCCAATGCGACTATAAAAGCAAATGTAAGATTGACTTTGGGAGACACATGCGCGTACATTACAGTGAGCGGCGGTACGCATGCCCTCGTTGCGATTTCAAATGCACGTCCTATTGGAACCTGTTAACCCACAAGGAAAGCCATTTAAATAAGATGGTGCATCAATGTGACCAATGTGACTATAAGTCCCGCCTTAAAAGAGAAATGTACCTCCACGTGCGTAGAACACATACCAGTGATCGAAAATACGCATGCAACATTTGTGATTACGAATGCACGTCCATTAGCGGCCTGTACAAGCACAAACGACGCCATATGACTTGCGGCCAATGTGATTTTAAATCGCGCAGCACGCGAGAGCTTAGCGTCCACATGCGCAAACATTTGAGTGAGCGGTCGTTTGCTTGCGACACATGTAGTTTCACATGCGAGTCGGAGGGGATCATGGCCAGACACAAGATACAATATTCGACGACTGAGAATTTCAGTTGCACTTTGTGTGCATTTACATCCAGCACGAAGTTCGGCCTTTCCTGTCACATGCGCAAACATTCTAGAGAGCGGGCAAACGCCTGCGACAATGCCAGCAAAGCGTTGACAAAACACAAGATACGAAATTTGGCGGGGAAGAGATTTAACTGCAGTGAATGTAAATTTGGATCGCAGGTAAAATGTGCAATTATCAAACACGTGCGCACGCATATGGTCGAGCAGTCATTTGCATGCGACATTTGCGGTTTCGAAGGTAAAACCAAGATAGGCGTTGCCATTCACCGACGTCGTCATTCGCACAAATGTGACCAGTGTGAGTATGAAGCAAACACAAAGTGGGACTTTGACGACCATCTGCGCACACATTCAAGTGAGCGGTCGTTTGCTTGCGAAATCTGCAGTTTCAAATTCAAATCCAGTAAGAGGCTGGCCATACACGAGTTACGGCATTCAACGATGAAGTATCACTGCAGCCAGTGTGCCTTTGAAACTAACTTCAAGATCTGCCTTGGCAATCACATGCGCGAACATTCGAGCGAAGAGCTGTACGCCTGCGAGATTTGCGATTACAAGTGTATGTCTGCCTGTCAAATGATTATACACAAAGTTTACCATTCTATGTAG
- Protein Sequence
- MDQRDIVQTETEDIDVINVSTSTSIPALEDDLNQHEVQNIDEIDVVNFTSEGDEVNLPSTSKGHNAIINQDKDPRNGSRQDPANGLTFSCNECKYKTESGPMMAEHLLQHPRCNYKCGLCDAVFSSEVNASRHLLAHSSEWLYACEICTFKSKTWKRMISHGLTHSKNMFSCSQCDYKSKCKIDFGRHMRVHYSERRYACPRCDFKCTSYWNLLTHKESHLNKMVHQCDQCDYKSRLKREMYLHVRRTHTSDRKYACNICDYECTSISGLYKHKRRHMTCGQCDFKSRSTRELSVHMRKHLSERSFACDTCSFTCESEGIMARHKIQYSTTENFSCTLCAFTSSTKFGLSCHMRKHSRERANACDNASKALTKHKIRNLAGKRFNCSECKFGSQVKCAIIKHVRTHMVEQSFACDICGFEGKTKIGVAIHRRRHSHKCDQCEYEANTKWDFDDHLRTHSSERSFACEICSFKFKSSKRLAIHELRHSTMKYHCSQCAFETNFKICLGNHMREHSSEELYACEICDYKCMSACQMIIHKVYHSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -