Basic Information

Insect: Leuctra nigra
Gene Symbol: -
Assembly: GCA_934046545.1
Location: CAKOHC010003434.1:28004-29857[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.063 4.5 9.1 6.9 1 23 171 193 171 193 0.98

2 11 0.00064 0.046 15.4 4.6 1 23 199 221 199 221 0.99

3 11 0.0013 0.092 14.4 1.6 1 23 227 249 227 249 0.96

4 11 1.3 96 4.9 0.9 1 23 334 356 334 356 0.94

5 11 0.00084 0.06 15.0 4.8 1 23 422 444 422 444 0.97

6 11 3.9 2.8e+02 3.4 2.4 1 23 451 474 451 474 0.93

7 11 0.03 2.2 10.1 0.1 1 23 480 502 480 502 0.97

8 11 0.00015 0.011 17.3 1.3 1 23 509 531 509 531 0.99

9 11 0.13 9.2 8.1 0.1 1 23 537 559 537 559 0.96

10 11 0.14 10 8.0 2.5 1 23 566 588 566 588 0.96

11 11 3.2 2.3e+02 3.7 0.1 1 23 594 617 594 617 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.063	4.5	9.1	6.9	1	23	171	193	171	193	0.98
2	11	0.00064	0.046	15.4	4.6	1	23	199	221	199	221	0.99
3	11	0.0013	0.092	14.4	1.6	1	23	227	249	227	249	0.96
4	11	1.3	96	4.9	0.9	1	23	334	356	334	356	0.94
5	11	0.00084	0.06	15.0	4.8	1	23	422	444	422	444	0.97
6	11	3.9	2.8e+02	3.4	2.4	1	23	451	474	451	474	0.93
7	11	0.03	2.2	10.1	0.1	1	23	480	502	480	502	0.97
8	11	0.00015	0.011	17.3	1.3	1	23	509	531	509	531	0.99
9	11	0.13	9.2	8.1	0.1	1	23	537	559	537	559	0.96
10	11	0.14	10	8.0	2.5	1	23	566	588	566	588	0.96
11	11	3.2	2.3e+02	3.7	0.1	1	23	594	617	594	617	0.92

Sequence Information

Coding Sequence: ATGGACGACGCAACTCAGCTGCAACCCATGAGTCACCGCCATCTTGTTGTTGTTAAATCAGAACCACAAGAATCTGAAGACACAGCGAACATAATCGACCAACATGAAGTTAATACAGAATCATCCGACCAGCCTTTAGAAGACTGCTTAATTCAACCTAATATAGAGATCAGTGTCGATAGAGATCTCTTCCATTTACAAACAAAATCCGAGAAAAATCCTGCATTCTACTGTAGTCATATAGGGGAAGGAAGTGGAAATGAAGAGTCCAACGCAATTAAACCACATCAAGACGCGATAGAGATCAAGCCACAGACTATTGGAGAAACAGGCTTCTTCTACATTCTTATCAAATCTGATCATCACACTGAACCAAGTCAAAACATTTATCCACTAAACAACAGCCCCGTTCCTCCCGGAGACTTGCTCTACTCTTGTGAACTCTGCAGCTACCAGGGTAACAAACGCAATCTAGCATGTCACAAGAGTCGCTATCATTCATCGTCCAGGTTCCAATGCAATCATTGTGTATTTAATTCAACATATAAGTCGTGTCTAATGAAACACATGTTACAACATTCATCAGAGAAGCGGTACCGATGCAAGAAGTGCGACTGTATATATAAGAGTAGACTTGAACTGACCATCCATAGGAGAACACATCCTGTAGAGGGGCCACATATTTGTGAGGTTTGCGTACTCAGTTGTGTCTCAAAAAGCTCGTTGACCGAACACATGTTGAGTCACTCCTCAGCAACTACCATCCAACCAGAAGAAGATTTAATCGGAATACAAGAGCGAATCATTCAAGCGAAAATAATCAGTGATGTCCCAGTACAATATGAAGTTAATACAGAAGTGACTAGTAAGGATAACGATCAACACGTTGAAATAAGTCAAGACACATATCCAGTAAACAACATCCGTAATCCTCCAATATACTTGCTCTACTCTTGTGAACTCGCCATCCATGAGAGAACTCATGAGGTAGACGGGCCGCATATTTGTGAGATTTGTGCACAAGTTTGTCTCTCCGGAAGTTCGTTGACCCTACACATGCTGAACCACTCCTCAATAGTTTCCAACCAACCAGAAGAAGATTTCATCAGAAAGCAAGAGCGACTCATTCTAGCAGAAACAGTCATTGGCATCCCAGAGCAATCGGAAGATATTGCTGAAATCCCTAGTAAGGATAAGGATCAACACACCGAACCAATTCAAAACACAGAACCACTGAGCCACAGCCTCGTTCCTCCCAGAGAGTTCGCTTGCAAACATTGCACTTTTAAAAGTAAGTCCAACGGCAGCCTGAAGAGGCACATGTCAACACACACAACAGTGAAGAAGCAGTTTCAGTGCATCCATTGTGGCTATACATGTAATGTTAAGCAAGACATCGACATCCATATTACATCAACGCATTCGGGAGAGCGGCCATTCGCATGTGGTGAATGCTCCTTCATGGCTGCTTCCAGCAGTGAGCTGACTCTCCACAAGAAAGTTCATTCGATTACAAGAACATTGTTTAAATGCACCGAGTGTGATTTTACTACGAACCTTAAAGGAAACTTTGAAGTCCATCTGAGAACACATTCAGGAGAGCGGCCATACGCATGTGATGATTGCTCCTACAAGGCTGCAACTAGCGCTAAACTGAATGGACATAAGATAGTTcattcaactacaaaaaaattgtataaatgCAGCCTGTGTGACTTTAAGTCTTGTTATCAGCGAGAACTGGACAATCATGTGGGAATGCATGTGGAGAAGAACCCTTATGCGTGTGATATATGCTCGTATGTAGGTGGCGCTAGTAGCATCCTGCGACAACACAAGAGAATGTATCACTAG
Protein Sequence: MDDATQLQPMSHRHLVVVKSEPQESEDTANIIDQHEVNTESSDQPLEDCLIQPNIEISVDRDLFHLQTKSEKNPAFYCSHIGEGSGNEESNAIKPHQDAIEIKPQTIGETGFFYILIKSDHHTEPSQNIYPLNNSPVPPGDLLYSCELCSYQGNKRNLACHKSRYHSSSRFQCNHCVFNSTYKSCLMKHMLQHSSEKRYRCKKCDCIYKSRLELTIHRRTHPVEGPHICEVCVLSCVSKSSLTEHMLSHSSATTIQPEEDLIGIQERIIQAKIISDVPVQYEVNTEVTSKDNDQHVEISQDTYPVNNIRNPPIYLLYSCELAIHERTHEVDGPHICEICAQVCLSGSSLTLHMLNHSSIVSNQPEEDFIRKQERLILAETVIGIPEQSEDIAEIPSKDKDQHTEPIQNTEPLSHSLVPPREFACKHCTFKSKSNGSLKRHMSTHTTVKKQFQCIHCGYTCNVKQDIDIHITSTHSGERPFACGECSFMAASSSELTLHKKVHSITRTLFKCTECDFTTNLKGNFEVHLRTHSGERPYACDDCSYKAATSAKLNGHKIVHSTTKKLYKCSLCDFKSCYQRELDNHVGMHVEKNPYACDICSYVGGASSILRQHKRMYH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -