Basic Information

Insect: Leuctra nigra
Gene Symbol: pol
Assembly: GCA_934046545.1
Location: CAKOHC010000644.1:110873-121311[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.076 5.4 8.8 4.7 1 23 940 962 940 962 0.97

2 9 0.0017 0.12 14.0 2.7 1 23 968 990 968 990 0.96

3 9 2.6 1.9e+02 4.0 5.4 1 23 996 1020 996 1020 0.98

4 9 0.0099 0.71 11.6 5.8 1 23 1026 1048 1026 1048 0.99

5 9 0.00052 0.037 15.6 0.4 1 23 1054 1076 1054 1076 0.97

6 9 0.0042 0.3 12.8 2.7 2 23 1083 1104 1082 1104 0.95

7 9 0.00028 0.02 16.5 1.0 1 23 1110 1132 1110 1132 0.99

8 9 0.00085 0.061 15.0 0.6 1 23 1138 1160 1138 1160 0.98

9 9 1.5 1e+02 4.8 1.0 2 21 1167 1186 1166 1187 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.076	5.4	8.8	4.7	1	23	940	962	940	962	0.97
2	9	0.0017	0.12	14.0	2.7	1	23	968	990	968	990	0.96
3	9	2.6	1.9e+02	4.0	5.4	1	23	996	1020	996	1020	0.98
4	9	0.0099	0.71	11.6	5.8	1	23	1026	1048	1026	1048	0.99
5	9	0.00052	0.037	15.6	0.4	1	23	1054	1076	1054	1076	0.97
6	9	0.0042	0.3	12.8	2.7	2	23	1083	1104	1082	1104	0.95
7	9	0.00028	0.02	16.5	1.0	1	23	1110	1132	1110	1132	0.99
8	9	0.00085	0.061	15.0	0.6	1	23	1138	1160	1138	1160	0.98
9	9	1.5	1e+02	4.8	1.0	2	21	1167	1186	1166	1187	0.93

Sequence Information

Coding Sequence: ATGCCCCCTAGATCGCCAGTGATAATTGTGGCTGCCTGGAACGCCAACGGCGGACTCAAGGCAAAATTAACAGAGCTTTATTTATTCATCCAGCAACAATCAGTAAACATAATCCTCATTTCTGAAACCCATCTTATTCCTACCGACAAACTCACCTTTCAAGACTTTAACATATACCGATCAGATCGCATCGCCGCCCATCGCGGAGGAGGCACCGCCATCTTTGTCTCAAATCAAATAGTCCACCAAGAATGTGCCCTTCCAAAACTCATTGCAATGGAAGCAAACGCCATCACCATCCAAACTGCACACGGGCCGATGCGACTTATATCCGTATACGCACCCCCAAAGACTGAATTTAAATCATGCGATATAAACAACATCCTGAACGATCCAGTCCCGACAATCATGGCAGGGGACTTCAATGCTAAACATAGAACTTGGAACAGCCGAACTAACAACGCTCGAGGCTACGCTCTCTACAAGCACTCTAGAAACAACAACTACATCGTTGCAGGCCCTAGAGAACCTACACACCACAATGGCAACCTAAGATACAGACCAGATGTTCTGGACATTGCTGTGGTTAATAACATCAGATGTTCCTTTGACATCGAAACGGTCATCGACCTACCATCCGACCATAACCCCATCCTGATCCGAGTAGGAAACCAATATTTACCATCGACTCCCCGGATACGGCGGAACTTCCATAAGCCTGACTGGGAGTGCTACATGGACGAAATGATCAAACTACTTCCAACAGATCCAGTCACAATCTCCACACCGGATGAGCTGGAACATCAGGTTGCCATCCTCACAAACGCCATATCACAAGCAACTGAAAAAGCAGTGCCAATCAATAAAGCATCGAACAAATCATTATACGATCTTCCACCAGGGCTGATGAAATCAGTTGCCACTAAAAATAAGGCTCGACGAGAATTCCAACATTATCGAACGCCAGCACTCAAAGCACACTACAACAAGCTAGAGAGGCAACTTAAGAGGGACTTGCAAGAGCACAGGAGATCAATGTGGGACACAACAGTGGGCAAGCTTGCATTCGCAGACCGCTCGGTATGGAGAATGAGCCGCAGTTTGCAACGCCGACCAGAACCAGATCCTCCACTTCAGGGCCCAAATCACATTGCGCATAGCCCCGAGGAGAAAGCGGAGATACTAGCTGACTCCCTTCAGGAGCAGTTTAGTCCTAATCCGGCCAATAGCAAGACACCACAAGTAGAGAACCTTGTCCAACAATACCTACATCATTATGGCACACCGCAAACATTACCGGACAACGCCCTCTGCACCTTTGACGAACTGTTCAACGTCGTCAAAAAATACCCAAATGGAAAGGCACCAGGATCTGATGACATCATCAAGCCGCAAATAATACAGCTTCCCGAAATAGCAATTCAACTTCTTCTTACAATAGTCAATGCTGTTCTTAAAACCCAGCACTTCCCTTCACAGTGGAAGAAAGCAAAAGTAATTTTATTTCTAAAGCCCGGCAAACCTCCCCGGCAACCAACAAGCTACAGACCATTTAGCCTCCTTCCACTCATATCCAAAATGGTGGAGAAAGTGATTCTTCGGAGAATAACAGAACATACCGACTCAAACAACATTCTCCCAAACGAGCAATTTGGCTTTCGCTCGGAGCATTCCACCATCCATCAACTCCTCCGAGTAACAAATAAAATCACCCATGGATACAACTGGCAGTCGTATACCGCCGCCGCTTTTCTCGACATCGCCAAAGCTTTTGACAGGGTCTGGCACAATGGTCTTCTTCTCAAACTTATAAAGCACAAGTTTCCCCCGTACCTAGTATTGCTGATACAGTCTTATCTCAAAAACCGTACCTTCTTTGTAACTAAACTCAGCTCCCAGTCCTCAGTCCGCCCCATCCTTGCTGGTGTTCCACAGGGCTCCTGCCTTGCTCCAGTATTATTCAATATCTTCACCTCTGACATCCCAACAACTTTCCCCTTCGTCACAATAGCGCTGTTCGCTGACGACCTTGCAATCCTAGCTCAATCTCGGAAAGCTCCACAGGCAGTTAAGTATCTTCAGCCTGCTCTTGACAGCATTGCAGCGTGGTACTCGTTGTGGCGCATCGACATCAACGCCTCAAAGACACAAGCCACCATGTTTGCCAGGGGACTGCAGCAAGCCCCCGAGCTCATCCTGCGAGGGGTCAGCATTCCCTGGAAGTGCGAGTCAAAGTATCTGGGTGTCATTATGGACAAGCACCTCACCTGGGAAGCTCACATCCGTGAAGTACACAAACGAGCCAACGGCAAATTTGCAGCACTATTGGTTGAAACTGTGGGGGACGAACATCGGGATTGCTTCAATGTCGCGTCGGAAGTAAAACAAGCGACGGAGTTGACTAACGATCCAGCAACCGAGTCCAACTTGGATACGCATTCCTCAAGTGTAGAGACGGATGTGAAACTTGAATCGTTGTCTAATGAACTAGCTGCTGAATCCATCTTAGTTCCGATTTCCTTCTTTGTGGATACGGATGTGAAGCAAGAGTCGGAGCTGACTCCTGACTCCGCTGTTAATCCGATTGCCATCAAGACGGAGGTAAATGAAACCGTCAAGAACGAAGCACAACCAGTTCCGAGAAGTCCATCCAGGTCTTTGCTGTTCACTGACATGCCGAGCACGAGCCGCAACCAAACACAAAGTCAGatCATGGACCAGAGTTCAGCAGACATTGCTGTCGCTGCAAAGTATAAACTGAAGCAGTGTTTTGTGTCAGTGACAAGATGTCCTTCAAATCGCACGGCGCGCATCGCACATCATTGTAGCCAGTGTGATTATACATCACGCAATAGGAGGGACTTTGCAGAACACCTGCTTACCCATTCGGGAGAGCGACCATTTGCGTGTCACATCTGTTCGTTCAAGACCACCACAAGAATCAACCTGAGACGGCACATTCTTCAACATTCCGCTGTGAAGAAGTATAAATGCAGTCAGTGTGACTTCAGTCAGTGTTATAAGACCAGCAAGAGACTGGCCAATCACAAGCTACGCCATGAAGGAGAGAAGAAGTTTCAATGCAGCCGTTGCGATTACAAATCACACAATAAGCACACACTTATGGTTCACATGCGTATTCACACCGGCGAGCGGCCATACGCTTGTACAGTTTGTACGTACAAGAGTGCCACCTCCAGTAATCTGGCGTTGCACATGAAGCAACATCTCGAAGTGAAGCCCTTGAAATGTGACAAGTGTACCTATACCTGCATTTCTAAAGATAGCCTTAGAAATCACTTGCTTGACCATTTGTCTGTGAAGTTGTTCAAATGCAGAGAATGTGATTATGGAACGAACACAAAGAAGTCTCTCGTGGTTCATCAGCGCATTCATTCGGGAGAGCGGCCGTATGCTTGTGACATTTGCGAGTACACGTCTACCAACAGCAGTGGTCTTACTATGCACAAGAAGCGACATGCCGAAGTCAAGAGCTTGAAGTGTGACAAATGTTCCTACGCATGCGCTGTGAGTGATACCATGGCTAAACACAAGAAGAACAAGCAGAAGTAG
Protein Sequence: MPPRSPVIIVAAWNANGGLKAKLTELYLFIQQQSVNIILISETHLIPTDKLTFQDFNIYRSDRIAAHRGGGTAIFVSNQIVHQECALPKLIAMEANAITIQTAHGPMRLISVYAPPKTEFKSCDINNILNDPVPTIMAGDFNAKHRTWNSRTNNARGYALYKHSRNNNYIVAGPREPTHHNGNLRYRPDVLDIAVVNNIRCSFDIETVIDLPSDHNPILIRVGNQYLPSTPRIRRNFHKPDWECYMDEMIKLLPTDPVTISTPDELEHQVAILTNAISQATEKAVPINKASNKSLYDLPPGLMKSVATKNKARREFQHYRTPALKAHYNKLERQLKRDLQEHRRSMWDTTVGKLAFADRSVWRMSRSLQRRPEPDPPLQGPNHIAHSPEEKAEILADSLQEQFSPNPANSKTPQVENLVQQYLHHYGTPQTLPDNALCTFDELFNVVKKYPNGKAPGSDDIIKPQIIQLPEIAIQLLLTIVNAVLKTQHFPSQWKKAKVILFLKPGKPPRQPTSYRPFSLLPLISKMVEKVILRRITEHTDSNNILPNEQFGFRSEHSTIHQLLRVTNKITHGYNWQSYTAAAFLDIAKAFDRVWHNGLLLKLIKHKFPPYLVLLIQSYLKNRTFFVTKLSSQSSVRPILAGVPQGSCLAPVLFNIFTSDIPTTFPFVTIALFADDLAILAQSRKAPQAVKYLQPALDSIAAWYSLWRIDINASKTQATMFARGLQQAPELILRGVSIPWKCESKYLGVIMDKHLTWEAHIREVHKRANGKFAALLVETVGDEHRDCFNVASEVKQATELTNDPATESNLDTHSSSVETDVKLESLSNELAAESILVPISFFVDTDVKQESELTPDSAVNPIAIKTEVNETVKNEAQPVPRSPSRSLLFTDMPSTSRNQTQSQIMDQSSADIAVAAKYKLKQCFVSVTRCPSNRTARIAHHCSQCDYTSRNRRDFAEHLLTHSGERPFACHICSFKTTTRINLRRHILQHSAVKKYKCSQCDFSQCYKTSKRLANHKLRHEGEKKFQCSRCDYKSHNKHTLMVHMRIHTGERPYACTVCTYKSATSSNLALHMKQHLEVKPLKCDKCTYTCISKDSLRNHLLDHLSVKLFKCRECDYGTNTKKSLVVHQRIHSGERPYACDICEYTSTNSSGLTMHKKRHAEVKSLKCDKCSYACAVSDTMAKHKKNKQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -