Basic Information

Insect: Leuctra nigra
Gene Symbol: -
Assembly: GCA_934046545.1
Location: CAKOHC010000915.1:249912-265246[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.41 29 6.5 2.9 1 23 360 382 360 382 0.97

2 10 0.011 0.81 11.4 2.5 1 23 388 410 388 410 0.98

3 10 0.00044 0.031 15.9 2.0 1 23 416 438 416 438 0.97

4 10 0.8 57 5.6 5.5 1 23 444 466 444 466 0.97

5 10 0.018 1.3 10.8 1.6 1 20 472 491 472 494 0.92

6 10 0.011 0.8 11.5 1.6 1 23 500 522 500 522 0.99

7 10 0.024 1.7 10.4 0.9 1 23 528 550 528 550 0.97

8 10 1.6e-05 0.0011 20.4 1.8 1 23 557 579 557 579 0.99

9 10 0.0012 0.082 14.6 4.6 1 23 585 607 585 607 0.97

10 10 0.0015 0.11 14.2 4.2 1 23 613 636 613 636 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.41	29	6.5	2.9	1	23	360	382	360	382	0.97
2	10	0.011	0.81	11.4	2.5	1	23	388	410	388	410	0.98
3	10	0.00044	0.031	15.9	2.0	1	23	416	438	416	438	0.97
4	10	0.8	57	5.6	5.5	1	23	444	466	444	466	0.97
5	10	0.018	1.3	10.8	1.6	1	20	472	491	472	494	0.92
6	10	0.011	0.8	11.5	1.6	1	23	500	522	500	522	0.99
7	10	0.024	1.7	10.4	0.9	1	23	528	550	528	550	0.97
8	10	1.6e-05	0.0011	20.4	1.8	1	23	557	579	557	579	0.99
9	10	0.0012	0.082	14.6	4.6	1	23	585	607	585	607	0.97
10	10	0.0015	0.11	14.2	4.2	1	23	613	636	613	636	0.96

Sequence Information

Coding Sequence: ATGGCAAATCGATACTGCAGTGTTCCACAGTGCTCGAACAAAGACTCCACCGCTGCAAAGGGACTGTCGTTTCATTTATTTCCTAAAGACACTGTGCGGCAGAAACAATGGGTAACGGCTTTGAAGATTGGGAAGAAGGTCTCCAAATGCATGATGGTGTGTGGAGAACACTTCAAACCagagaacttcttttactctcATCCACGAGCTCCTGCAGGACTTAAAAGAAAGAGACTGAAGTTGACAGCTGTACCGTCGGCCAAGCTACCTGTAGGATCGCATGACCGCGTCGCACGTGCTAGCGCAACGGCCAAGGTGAAGCGAGCTGGCCGGCTTCAAGAGAGGAGAAAGAGGAAACCCGAAGCTGCTGCACTCTCCTGTGAGTTTGGTCCGAAGAGAGATTTCAACTCAACAACTACGGACTTTAACATGCCGAACCCTGCAGACTTGGAGGCTATCGAGGGAACCGTGCACGTGAAGATCGAAGAACACCCAATCGACGTGAAACCTGAACTTGACCTAATGCCTACTTTCGACCGTCATTACGTCTTTCTACCAGAAGGTCCAACCATGGACGTAGATCTTTACTCTGCAGCCACCTCCGTAGTACACATGGAACAAGAATCAGATCCTTTCACAGCTCTGCCTTCCGTAGATACTGAGAGAGCGGATCCAGCTATGATGAACCAAATCTGGGATTCCAGCAACACTGTGGTTAAGACAGAATTAGAGGAAACCGTGGATTATGAAAGCAACATAATGACATCAACATCCATCCAGCCAATTGAAGAATACCTAATGGAGCAGAACAGTCATTCCAGCGCCATTGCTGTGAAGTCTGAGCCAGAGGACACGGAAGATGCTGTAAACATCAGCGGAGAGCAGAACATTCCCACGTACACGTCCATCTTAAAACAATACTTAATGGAGCAGAAACCGAAGATCAGCGCAGACACAAACATATGTCATATTGAAGGAGACGCTGCATTTTCTCGCAAAGATAACGATCCTGAAGCaggaccaagtcaaaacatagatCCACTTAACCAGAGCCTCCTTCACCCCAGAGACTTTCCCTTTCCTTGCAATGAATGCACTTACAAGGGTACTTCCAGACGCTGCCTTGTCCTGCACAAGAAACTCCATTCTTCAGAGAAGAAgcatcaatgcagccaatgtgactacatAACACTTTATAAGAGTGAACTTGTGCGTCACCTGCGCAGGCATTCTGGACAGCGGCCATTCGCATGCGACATTTGCACGTATAAGTGTGCAAGCAGTAGTAATCTGGCCAAACACAAGCTACGTCATACAAATGAGAAGAAGTTCCATTGCAGCCATTGTGACTTCAGAGCTCATGTGAAGTACGATCTTGTTCGTCACCTGGGCACTCATACTGGAGAGCGGCCACACGCATGCGATATTTGCACGTACATTTATTCAGATAGTGGTAATCTGGCCCAACACAAGCTATGTCATTCAAATGAGAAGATGTTCAAATGCAGTCAATGTGACTTCAGAGCTCACCGGAAGAACGACGTTGTAGCTCACATGCGAATTCATTCTGGAGAGCGACCATATGCATGTGATCTCTGCGAGGGCAAGTGTAAGAGTAGCAGCGCACTTGTCAGTCACAAGAAGATTCACTTTAGAAGTGTGAAGAACTTTAAATGTGACAAATGTAATTATGAGTGTGTGCGTAGCGGTGACCTAACCGCACATATAAAGACGCACTCTGGTGTGAAGATCTACAAATGCGACAAGTGTAATTATGCGTGTGTTCGTAGGTGGGACCTAACCCGACACAAGAAGTTTCACTTTGAACTCAAGCCTTATCAGTGTGATAAATGTACTTATTCATGTGTACAGAGCAGGGACCTTACAAAACACAAGATAAGAcaacataagtaa
Protein Sequence: MANRYCSVPQCSNKDSTAAKGLSFHLFPKDTVRQKQWVTALKIGKKVSKCMMVCGEHFKPENFFYSHPRAPAGLKRKRLKLTAVPSAKLPVGSHDRVARASATAKVKRAGRLQERRKRKPEAAALSCEFGPKRDFNSTTTDFNMPNPADLEAIEGTVHVKIEEHPIDVKPELDLMPTFDRHYVFLPEGPTMDVDLYSAATSVVHMEQESDPFTALPSVDTERADPAMMNQIWDSSNTVVKTELEETVDYESNIMTSTSIQPIEEYLMEQNSHSSAIAVKSEPEDTEDAVNISGEQNIPTYTSILKQYLMEQKPKISADTNICHIEGDAAFSRKDNDPEAGPSQNIDPLNQSLLHPRDFPFPCNECTYKGTSRRCLVLHKKLHSSEKKHQCSQCDYITLYKSELVRHLRRHSGQRPFACDICTYKCASSSNLAKHKLRHTNEKKFHCSHCDFRAHVKYDLVRHLGTHTGERPHACDICTYIYSDSGNLAQHKLCHSNEKMFKCSQCDFRAHRKNDVVAHMRIHSGERPYACDLCEGKCKSSSALVSHKKIHFRSVKNFKCDKCNYECVRSGDLTAHIKTHSGVKIYKCDKCNYACVRRWDLTRHKKFHFELKPYQCDKCTYSCVQSRDLTKHKIRQHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00894852;
90% Identity: iTF_00894852;
80% Identity: iTF_00894852;