Lnig034287.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leuctra nigra
Gene Symbol
ZFX
Assembly
GCA_934046545.1
Location
CAKOHC010004238.1:30115-35450[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 1.4 97 4.9 0.3 1 23 439 461 439 461 0.95
2 20 0.053 3.8 9.3 2.9 1 23 467 489 467 489 0.98
3 20 2.8 2e+02 3.9 5.5 1 23 495 517 495 517 0.96
4 20 1.4e-05 0.00098 20.6 3.7 1 23 523 545 523 545 0.98
5 20 0.21 15 7.5 3.8 1 23 551 573 551 573 0.96
6 20 0.026 1.8 10.3 4.0 1 23 579 601 579 601 0.97
7 20 0.00052 0.037 15.7 3.6 1 23 607 630 607 630 0.98
8 20 2.4 1.7e+02 4.1 6.9 1 23 636 658 636 658 0.97
9 20 0.053 3.8 9.3 0.8 1 23 664 687 664 687 0.97
10 20 0.16 11 7.8 5.3 1 23 693 715 693 715 0.98
11 20 0.095 6.8 8.5 0.8 1 23 721 744 721 744 0.97
12 20 2.4 1.7e+02 4.1 6.9 1 23 750 772 750 772 0.97
13 20 0.053 3.8 9.3 0.8 1 23 778 801 778 801 0.97
14 20 0.16 11 7.8 5.3 1 23 807 829 807 829 0.98
15 20 0.095 6.8 8.5 0.8 1 23 835 858 835 858 0.97
16 20 0.16 11 7.8 5.3 1 23 864 886 864 886 0.98
17 20 0.095 6.8 8.5 0.8 1 23 892 915 892 915 0.97
18 20 0.0032 0.23 13.2 2.8 1 23 921 943 921 943 0.98
19 20 0.0048 0.34 12.6 0.9 1 23 949 971 949 971 0.98
20 20 0.26 19 7.1 1.6 1 23 977 1000 977 1000 0.97

Sequence Information

Coding Sequence
ATGTTGTCTCCGGGACACACGGGTACCACGGAGCATTTGCAGTGCCTCCCCACCATGTTGCAGCCCTCTTGCATCAGTGGGTCGGAGCACAGCACTTCGCTGCCGGGTTTCCCTGCAACACAAGGTCAATCAGCCGCCATGTTGTCTCCGGGACACACGGGTACCTCGGAGCATTTGCAGTGCCTCCCCACCATGTTGCAGCCCTCTTGCATCAGTGGGTCGGAGCACAGCACTTCGCTGCCGGGTTTCCCTGCAACACAAGGTCAATCAGCCGCCATGTTGTCACCGGGACACACGGGTACCTCGGAGCATTTGCAGTGCCTCCCCACCATGTTGCAGTCCTCTTGCAATTGTGGGTCGGAGCACAGCACTTCGCTGCCGGGTTTCCCTGCAACACAAGGTCAAATCAGCCGCCATGTTGTCTCCGGGACACACGGGTACCTCGGAGCATTTGCAGTGTCTCCCCACCATGTTGCAGCCCTCCTGCATCAGTGGGTCGGAGCACAGCACTTCGCTGCCGGGTTTCCCTGCAACACAAGGTCAAATCAGCCGCCATGTTGTCTCCGGGACACACGGGTACCTCGGAACATTTGCAGTGTCTCCCCACCATGTTGCAGCCCTCTTGCATCAGTGGGTCGGAGCACAGCACTTCGCTGCCGGGTTTCCCTGCAACACAAGGTCAATCAGCCGCCATGTTGTCTCCGGGACACACGGGTACCTCGGAACATTTGCAGTGTCTCCCCACCATGTTGCAGCCCTCTTGCATCAGTGGGTCGGAGCACAGCACTTCGCTGCCGGGTTTCCCTGCAACACAAGGTCAAATCAGCCGCCATGTTGTCTCCGGGACACACGGGTACCTCGGAACATTTGCAGTGTCTCCCCACCATGTTGCAGCCCTCTTGCATCAGTGGGTCGGAGCACAGCACTTCGCTGCCGGGTTTCCCTGCAACACAAGGTCAAATCAGCCGCCATGTTGTCTCCGGGACACACGGGTACCTCGGAGCATTTGCAGTGTCTCCCCACCATGTTGCAGCCCTCTTGCATCAGTGGGTCGGAGCACAGTACTTCGCTGCCGGTAGGGTAGAGTTTGATTGTCAGAACATCTCGGCCGCATACAGCAGTTCGTTAAACCTTCAAAGACACGTTGACCACAAGAATCCTGTCATTGCCCACGCAACACCGGAAGACACGCAGGACCAACCAGCCACAAGCAGCCTGCGCGAAGAGAGAAGCAAGGAGTGTTCAGGTTCCAGTAGCAACTCTAATGATCTGACACACAACAGGCTAGCTGTGGCTGGCACAGATGAGAAGATGTACGCCTGCGATATTTGTTCCTACAAGGCATACGCCATCAAAAATCTTACTTTACACAAGAAGATCCATTCCACTGAAAAGCCGCACCAGTGCACTACATGCGAATATAGAACTAAATGGAAGAGTAACCTCGTCGACCACCAACGTCTCCATTTGGGCGAGCGGCCGTACGCCTGCAATGTTTGCCATCACAAATCGTACACTAGATGCCAACTAGCCGAGCATAAGGAGATccattcctctgagaagccACACCGATGCACTATATGCGAATATAGAACTAAAAGGAAGAGTAACCTCGTCGACCACATGCGTACACATTCGGATGAGAAGCCACACGCCTGCAATGTTTGCTCATACAAGACGTACTCCATCTCCAATTTGTCTCATCACAAGCAGGTCCATTCCTCTGAGAAGTCTCACCAGTGCAATAAATGTGAATATAGAACAAACGTCAAAAGGAATCTCGTTGCCCACCAGCACATCCATTCAGGCGAGCGGCCATACGTCTGCAATATTTGCCCCTATAAGTCTTGCAAAAACAGCGAATTGACACGTCACAAGAAGACGTCAcattcctctgagaagccgCACCAGTGTACCTCATGTGGATTTAGAACAAACTTCAAGTGTAGCCTCGTTGCCCACCAGCACATCCATTCAGGCGAGCGGCCGTACGCCTGCAATATTTGCCCCTACAAGTCTTGGAAGAACAGCGAATTGTCACGTCACAAGAAGACGTCAcattcctctgagaagccgCACCAGTGCACCTCATGTGGATTTAGAACAAACTTCAAGTGTAGCCTCGTCGTTCACCAGCGCATACATTCGAGCGAGCGGCCGTACGCCTGCAATGTTTGCCCCTACAAGTCTTGGAAGAACAGCGAATTGTCACGTCACAAGAAGACGTCAcattcctctgagaagccgCACCAGTGTACCTCATGTGGATTTAGAACAAACTTCAAGTGTAGCCTCGTTGCCCACCAGCACATCCATTCAGGCGAGCGGCCGTACGCCTGCAATATTTGCCCCTACAAGTCTTGGAAGAACAGCGAATTGTCACGTCACAAGAAGACGTCAcattcctctgagaagccgCACCAGTGCACCTCATGTGGATTTAGAACAAACTTCAAGTGTAGCCTCGTCGTTCACCAGCGCATACATTCGGGCGAGCGGCCGTACGCCTGCAATGTTTGCCCCTACAAGTCTTGGAAGAACAGCGAATTGTCACGTCACAAGAAGACGTCACATTCCTCTGAGAAGACGCACCAGTGCACCTCATGTGGATTTAGAACAAACTTCAAGTGTAGCCTCGTCGTTCACCAGCGCATACATTCGGGCGAGCGGCCGTACGCCTGCAATGTTTGCCCCTACAAGTCTTGGAAGAACAGCGAATTGTCACGTCACAAGAAGACGTCACATTCCTCTGAAAAGCCGCACCAGTGTACCTCATGTGGATTTAGAACAAACTTCAAGAGTAGCCTCGTCGTCCACCAGCGCATACATTCGGGCGAGCGGCCGTACGCCTGCAAGCTTTGCACCTACACGTGTGCCGCTGGCACCGACCTGGCCCGTCACATGCGGACGCACTTAGCTGTAAAACCCTTCCAATGTGCCCATTGCGCCTATTCGAGCGCCAGGAAGACTACACTGGGTGGTCACTTGAAGCGACGTCACCAATAG
Protein Sequence
MLSPGHTGTTEHLQCLPTMLQPSCISGSEHSTSLPGFPATQGQSAAMLSPGHTGTSEHLQCLPTMLQPSCISGSEHSTSLPGFPATQGQSAAMLSPGHTGTSEHLQCLPTMLQSSCNCGSEHSTSLPGFPATQGQISRHVVSGTHGYLGAFAVSPHHVAALLHQWVGAQHFAAGFPCNTRSNQPPCCLRDTRVPRNICSVSPPCCSPLASVGRSTALRCRVSLQHKVNQPPCCLRDTRVPRNICSVSPPCCSPLASVGRSTALRCRVSLQHKVKSAAMLSPGHTGTSEHLQCLPTMLQPSCISGSEHSTSLPGFPATQGQISRHVVSGTHGYLGAFAVSPHHVAALLHQWVGAQYFAAGRVEFDCQNISAAYSSSLNLQRHVDHKNPVIAHATPEDTQDQPATSSLREERSKECSGSSSNSNDLTHNRLAVAGTDEKMYACDICSYKAYAIKNLTLHKKIHSTEKPHQCTTCEYRTKWKSNLVDHQRLHLGERPYACNVCHHKSYTRCQLAEHKEIHSSEKPHRCTICEYRTKRKSNLVDHMRTHSDEKPHACNVCSYKTYSISNLSHHKQVHSSEKSHQCNKCEYRTNVKRNLVAHQHIHSGERPYVCNICPYKSCKNSELTRHKKTSHSSEKPHQCTSCGFRTNFKCSLVAHQHIHSGERPYACNICPYKSWKNSELSRHKKTSHSSEKPHQCTSCGFRTNFKCSLVVHQRIHSSERPYACNVCPYKSWKNSELSRHKKTSHSSEKPHQCTSCGFRTNFKCSLVAHQHIHSGERPYACNICPYKSWKNSELSRHKKTSHSSEKPHQCTSCGFRTNFKCSLVVHQRIHSGERPYACNVCPYKSWKNSELSRHKKTSHSSEKTHQCTSCGFRTNFKCSLVVHQRIHSGERPYACNVCPYKSWKNSELSRHKKTSHSSEKPHQCTSCGFRTNFKSSLVVHQRIHSGERPYACKLCTYTCAAGTDLARHMRTHLAVKPFQCAHCAYSSARKTTLGGHLKRRHQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-