Basic Information

Insect: Leuctra nigra
Gene Symbol: -
Assembly: GCA_934046545.1
Location: CAKOHC010002759.1:1-32607[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.03 2.1 10.1 0.7 1 23 217 239 217 239 0.95

2 19 0.056 4 9.2 0.3 1 23 245 267 245 267 0.98

3 19 0.55 39 6.1 2.8 1 23 299 321 299 321 0.98

4 19 0.32 23 6.9 2.8 1 23 327 350 327 350 0.94

5 19 0.0017 0.12 14.0 1.7 1 23 356 378 356 378 0.98

6 19 8.9 6.4e+02 2.3 0.9 1 21 384 404 384 406 0.79

7 19 0.0038 0.27 12.9 1.1 2 23 512 533 511 533 0.95

8 19 0.025 1.8 10.4 1.8 1 23 539 561 539 561 0.98

9 19 0.0021 0.15 13.8 1.2 1 23 567 589 567 589 0.96

10 19 0.0021 0.15 13.7 3.6 1 23 595 617 595 617 0.98

11 19 0.0022 0.16 13.7 1.4 1 23 623 646 623 646 0.96

12 19 0.007 0.5 12.1 2.0 1 23 651 673 651 673 0.99

13 19 0.014 0.99 11.2 1.2 1 23 679 701 679 701 0.97

14 19 0.061 4.4 9.1 4.2 1 23 707 729 707 729 0.98

15 19 0.018 1.3 10.8 0.9 1 23 735 757 735 757 0.96

16 19 1.4 1e+02 4.9 1.6 5 23 759 777 758 777 0.95

17 19 1.8 1.3e+02 4.5 0.5 1 23 783 805 783 805 0.95

18 19 2.8 2e+02 3.9 0.2 1 17 849 865 849 866 0.90

19 19 2.5 1.8e+02 4.1 0.4 1 21 910 930 910 931 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.03	2.1	10.1	0.7	1	23	217	239	217	239	0.95
2	19	0.056	4	9.2	0.3	1	23	245	267	245	267	0.98
3	19	0.55	39	6.1	2.8	1	23	299	321	299	321	0.98
4	19	0.32	23	6.9	2.8	1	23	327	350	327	350	0.94
5	19	0.0017	0.12	14.0	1.7	1	23	356	378	356	378	0.98
6	19	8.9	6.4e+02	2.3	0.9	1	21	384	404	384	406	0.79
7	19	0.0038	0.27	12.9	1.1	2	23	512	533	511	533	0.95
8	19	0.025	1.8	10.4	1.8	1	23	539	561	539	561	0.98
9	19	0.0021	0.15	13.8	1.2	1	23	567	589	567	589	0.96
10	19	0.0021	0.15	13.7	3.6	1	23	595	617	595	617	0.98
11	19	0.0022	0.16	13.7	1.4	1	23	623	646	623	646	0.96
12	19	0.007	0.5	12.1	2.0	1	23	651	673	651	673	0.99
13	19	0.014	0.99	11.2	1.2	1	23	679	701	679	701	0.97
14	19	0.061	4.4	9.1	4.2	1	23	707	729	707	729	0.98
15	19	0.018	1.3	10.8	0.9	1	23	735	757	735	757	0.96
16	19	1.4	1e+02	4.9	1.6	5	23	759	777	758	777	0.95
17	19	1.8	1.3e+02	4.5	0.5	1	23	783	805	783	805	0.95
18	19	2.8	2e+02	3.9	0.2	1	17	849	865	849	866	0.90
19	19	2.5	1.8e+02	4.1	0.4	1	21	910	930	910	931	0.90

Sequence Information

Coding Sequence: CGGAATAAACTCTGTCCGGCCGTGATTCGCATCAAAGTGAAGAAAACTACCGTCGCCACTAAGAAGAAGGACAAGTTGATGAGACTTGGCTTGAACACAATTATACAGaaccctgCAGACTCAGAGGCTATCGAGGGAACCGTGAAGATAGAGATCGAAGAACACCCAATCGACGAGAAACCTGAACTTGACCTAATGCCTACTTTCGACCGTCATTACGTCTTTCTACCAGAAGGTCCAACCATGGACGAAGATCTTCACTCTGCAACCACCTCGGTGAATTTAAAACAAGTTACAGATCCTTTCACAGCTGTGCGTTCCGTAGATACTGAGATAGAGAATGAAGCAAATGGGGACCATCTCAGAGATTCTAGCGACATTGGTTTTAAATCAGAACCAGTGGAAAATGAAGATTCGGCCAATGTTATAATCGAAAACAAGATCATATCAGGAACTTCCATGATATCAACAGAAGGACACTTAATCGATCATAAACTCATAAGCGAAGACAGAAACAAACGTCATATTGAAGGAGACGCTACATTTTCTCACAATGATAACGATACTGAACCAGGACCAAGCCAAAACATACATTCACTTAAGAAATATCCAGTTAAGAAGATTCTCATTTACCCCATAGACTTCCCTTATTCTTGCAATGAATGCACTTACAAGGGTGCCTCCAACTATGACCTTGCCAAGCACAAGATATTCCATTCTTCAGAAATGAATCATCGATGCGGCCAATGTGACTTCAGAGCTGACGATAAGGTTGCAATTATAGAACACATGCGTACTCATTCGGAGGGGGTTCTTTGCAAAGTATCCACATACCAGGGTCCTACCAGTGTTGCGCCAGCCACACCAGAGGGTTTCTTTCCCGGCAAGGAGGTGCATCAATGCAGCGAGTGTAGCTACAGATCCCACACGGTCAATAATGTTGTAGTTCATCAGCGCATACATTCAGGAGAGCGTCCGTTTGCCTGCAATGAGTGTACTTTCAGGACTTTCACCAGTTACGGTCTTGCCCAGCACAAGAGACACCTGCATTCTTCAGAAAAGAAGCATGAATGCAGTCAATGTGACTTCAGATCAAAGTATAAGAGTGCGCTTGAGGTTCACCTGCTTACTCATTCTGGAGAACAGCCATACGAATGCGACACCTGCTCCTTCAAGACCACCACAAAAAGCATCTGGGATGAACACAAGCAGCTCCATTTTAAGATGTCGATGGCAAATATGATGGACCATCTCTGTGATGCGAGCAACATTGTCTTGAAAACAGAGCAAGTGGAATCTGGGGATAATGAATCAATAAGTATAGAAAACAGCATAACGACTGCAACATCCATCCAGCCAATAGAAGAATATATCATGGAGCAGAAACCGAAGATCAGCGCAGACACAAACATATTATGTCATATTGAAGGAGACGCTGCATTTTCTCGCAATGATAACGATCCTGAAGCaggaccaagtcaaaacatagatCCACTTAACCAGAGCCTCCTTCACCCCACAGACTTTCACCTTTCTTGCAATGAGTGCACTTACAAGGGTACTTCTAAGTACAACCTCGCCAGGCACAAGAACCTCCATTCTTCagagaagaagttccaatgcagccaatgtgactacagaGCACACCAGAAGGGTAGCTTTGTAGCTCACCTGAGCACACATTCTGGAGAACGGTCATTCGCCTGCAATGAGTGCACTTACAAGGGTACTTCTAAGTACAACCTCGCCAGGCACAAGAACCTCCATTCTTCAGAGAAGAAgcatcaatgcagccaatgtgacttcaGAACACAAAGAAAGGAGAACCTTGTCCGTCACCTGAGCACACATTCTGGAGAGCGGTCATTCGTCTGCAATGAATGTACTTACAAGGGCACTTCTAAGTACAACCTTGCCAAGCACAAGATACGCCAACATTCAGAGAAGATgttccaatgcagccaatgCGACTACAGAACACACATGAAGGGTAACCTTGTAGTTCACCTGAGCACACATTCTGGAGAGCGGTCATTCGTCTGCAATGAATGCACTTACAAGGGTACCTCCAGACGCAACCTTGCCATGCACAAGAAACTCCATTCTTCAGAGAAGAAgcatcaatgcagccaatgCGACTACAGAACTCATGTGAAGAGGGACCTTGGTCGTcacctgcgtattcattctggcGATAGTCCATACGCATGTGATGTCTGCGAGTACAAGACCACTTCAACTAACAACTTAAGAATGCACAAGCAACTGCATTCCAAGTGCGATTACAAAACTCACGAGAAGCGAGCACTTAATGTTCACCTGCGCAAGCATTCCGGAGTGAGTCCTTACGCTTGCGACGTCTGCAATTATAGGGCACTCACAAAAACCACCCTGGCCACACACAAACTACGCCATGTGttgaagaagatgaaggaaAAGCTGATGACGGAGAAGAAAATGTTGGACTGCAGGCGATGTGACTTCGGATCATTCCCGAGTGGCGCGCCAATAGTTCACTTGCGCAGGTATTCCGGAGAGCGGCCATTTGCTTGCAGTGACTGCGAATACCGGTGTGCCTCCGCAACAGCGCTCACAGCGGCGATCTCACCAAGCACAAGGTCGTGCATTCAACAGAGAAGAATCTACAATGCGGCGAATATGACTTCAAGGCGAACAAAATGGAACGCACTTGTAATTCATATGAGCAGACATACCGGCGCGCGGCCACACGCATGTGATGTCTGTACTTACAAGTCTGCCCACAAGAGTGCTGTGATCATGCACAAGCTGACTCTCTCCAAGGAGAAGAAGTTCACGTGTAGCGGACCAGAAGTGCAGCCTTCTGGAGCACATGCGCTGTCATACTGGCGAGCGGCATTACACCAGCGATGTCTGCAAGTAGTCTGA
Protein Sequence: RNKLCPAVIRIKVKKTTVATKKKDKLMRLGLNTIIQNPADSEAIEGTVKIEIEEHPIDEKPELDLMPTFDRHYVFLPEGPTMDEDLHSATTSVNLKQVTDPFTAVRSVDTEIENEANGDHLRDSSDIGFKSEPVENEDSANVIIENKIISGTSMISTEGHLIDHKLISEDRNKRHIEGDATFSHNDNDTEPGPSQNIHSLKKYPVKKILIYPIDFPYSCNECTYKGASNYDLAKHKIFHSSEMNHRCGQCDFRADDKVAIIEHMRTHSEGVLCKVSTYQGPTSVAPATPEGFFPGKEVHQCSECSYRSHTVNNVVVHQRIHSGERPFACNECTFRTFTSYGLAQHKRHLHSSEKKHECSQCDFRSKYKSALEVHLLTHSGEQPYECDTCSFKTTTKSIWDEHKQLHFKMSMANMMDHLCDASNIVLKTEQVESGDNESISIENSITTATSIQPIEEYIMEQKPKISADTNILCHIEGDAAFSRNDNDPEAGPSQNIDPLNQSLLHPTDFHLSCNECTYKGTSKYNLARHKNLHSSEKKFQCSQCDYRAHQKGSFVAHLSTHSGERSFACNECTYKGTSKYNLARHKNLHSSEKKHQCSQCDFRTQRKENLVRHLSTHSGERSFVCNECTYKGTSKYNLAKHKIRQHSEKMFQCSQCDYRTHMKGNLVVHLSTHSGERSFVCNECTYKGTSRRNLAMHKKLHSSEKKHQCSQCDYRTHVKRDLGRHLRIHSGDSPYACDVCEYKTTSTNNLRMHKQLHSKCDYKTHEKRALNVHLRKHSGVSPYACDVCNYRALTKTTLATHKLRHVLKKMKEKLMTEKKMLDCRRCDFGSFPSGAPIVHLRRYSGERPFACSDCEYRCASATALTAAISPSTRSCIQQRRIYNAANMTSRRTKWNALVIHMSRHTGARPHACDVCTYKSAHKSAVIMHKLTLSKEKKFTCSGPEVQPSGAHALSYWRAALHQRCLQVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -