Basic Information

Insect: Leuctra nigra
Gene Symbol: -
Assembly: GCA_934046545.1
Location: CAKOHC010000915.1:200777-201736[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0011 0.082 14.6 3.9 1 23 96 119 96 119 0.97

2 8 0.011 0.79 11.5 4.5 1 23 124 146 124 146 0.98

3 8 0.0062 0.44 12.3 0.5 1 23 152 174 152 174 0.95

4 8 0.0015 0.11 14.2 3.7 1 23 180 202 180 202 0.98

5 8 0.00048 0.034 15.8 0.5 1 23 208 230 208 230 0.97

6 8 0.005 0.36 12.6 3.0 2 23 237 258 236 258 0.97

7 8 0.00055 0.039 15.6 1.0 1 23 264 286 264 286 0.96

8 8 0.00037 0.027 16.1 2.2 1 23 292 314 292 314 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0011	0.082	14.6	3.9	1	23	96	119	96	119	0.97
2	8	0.011	0.79	11.5	4.5	1	23	124	146	124	146	0.98
3	8	0.0062	0.44	12.3	0.5	1	23	152	174	152	174	0.95
4	8	0.0015	0.11	14.2	3.7	1	23	180	202	180	202	0.98
5	8	0.00048	0.034	15.8	0.5	1	23	208	230	208	230	0.97
6	8	0.005	0.36	12.6	3.0	2	23	237	258	236	258	0.97
7	8	0.00055	0.039	15.6	1.0	1	23	264	286	264	286	0.96
8	8	0.00037	0.027	16.1	2.2	1	23	292	314	292	314	0.99

Sequence Information

Coding Sequence: ATGGACACACGCTGGGAATCCTGCAACTTAGTGTTAAAAAGAGAACCTGAGGAATTTGTGGATTGTGAATATTTAAGTCTAGAAAACAACATAATGACATCAACACCCATCCAGCCAATAGAAGAATATATCATGGAGCAGAAACCGAAGATCAGCGCAGACACAAACATAGGTCATATTGAAGGAGACGCTGCATTTTCTCGCAATGATAACGATCCTGAAGCaggaccaagtcaaaacatagatCCACTTAACCAGAGCCTCCTTCACCCCAGAGACTTTCCCTTTTCTTGCAATGTATGCACTTACAAGGGTACCTCAAGACGCAACCTTACCAAGCACAAGAGACGCAAACATTCAGAGAAGAAgcatcaatgcagccaatgtgacttcaGAACTCACGAGAAGGGTAACCTTGTACGTCACCTGAGCACACATTCTGGAGAGCGGTCATTCGCCTGCAATGAATGCACTTACAAGGGTACCTCCAGCCGCAACCTTGCTCAGCACAAGATACTCCATTCTTCAGAGAAGAAgcatcaatgcagccaatgtgacttcaGAACTCACGAGAAGAGCAATCTTATAGTTCACCTGCGCGTTCACTCTGGGGAGCGGCCATATGCATGCGACATTTGCACGTACAAGAGTGCAACCAATGGTAATCTGACCCAACACAAGTTACGTCATTTAAACGAGAAGAAGCTCCAATGCAGCCATTGCGACTTCAGAGCTCACGTGCAGAGCAACCTTGACCGTCACCTACGCATTCATTCTGGAGAGCGGCCATTTGCATGCGACATCTGCACGTACAAGTGTGCAACCAGTAATGATCTGGCCAAACACCAGCTACTTCACTCAAACGtgaagaagttccaatgcagccaatgtgactacagaGCTCACCAGAAGGGCAATCTTGTTCGTCACCTGAGCACACATTCTGGAGAGCGTCCATAA
Protein Sequence: MDTRWESCNLVLKREPEEFVDCEYLSLENNIMTSTPIQPIEEYIMEQKPKISADTNIGHIEGDAAFSRNDNDPEAGPSQNIDPLNQSLLHPRDFPFSCNVCTYKGTSRRNLTKHKRRKHSEKKHQCSQCDFRTHEKGNLVRHLSTHSGERSFACNECTYKGTSSRNLAQHKILHSSEKKHQCSQCDFRTHEKSNLIVHLRVHSGERPYACDICTYKSATNGNLTQHKLRHLNEKKLQCSHCDFRAHVQSNLDRHLRIHSGERPFACDICTYKCATSNDLAKHQLLHSNVKKFQCSQCDYRAHQKGNLVRHLSTHSGERP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -