Basic Information

Insect: Leuctra nigra
Gene Symbol: -
Assembly: GCA_934046545.1
Location: CAKOHC010000455.1:78283-102644[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.0047 0.34 12.6 0.6 1 23 355 378 355 378 0.93

2 20 0.024 1.7 10.4 0.3 2 23 404 426 403 426 0.94

3 20 0.28 20 7.0 0.7 1 23 432 454 432 454 0.98

4 20 0.062 4.4 9.1 0.5 1 23 470 492 470 492 0.98

5 20 0.00034 0.024 16.2 1.5 1 23 548 571 548 571 0.97

6 20 0.0048 0.34 12.6 0.2 2 23 576 598 575 598 0.96

7 20 0.089 6.4 8.6 0.7 2 21 631 650 631 651 0.95

8 20 0.054 3.8 9.3 4.8 1 23 665 688 665 688 0.93

9 20 1.4 1e+02 4.8 0.1 2 23 768 790 767 790 0.93

10 20 0.0058 0.41 12.4 0.3 1 23 796 819 796 819 0.97

11 20 0.35 25 6.7 5.3 1 23 827 849 827 849 0.98

12 20 6.2 4.4e+02 2.8 0.0 10 23 898 912 889 912 0.90

13 20 0.00091 0.065 14.9 1.7 1 23 915 938 915 938 0.94

14 20 0.56 40 6.1 0.4 2 23 945 967 944 967 0.96

15 20 0.015 1.1 11.1 1.2 1 20 1005 1024 1005 1026 0.96

16 20 0.058 4.2 9.2 0.2 1 23 1041 1064 1041 1064 0.96

17 20 0.88 63 5.5 0.3 2 23 1094 1115 1093 1115 0.93

18 20 0.14 10 8.0 0.2 2 23 1183 1205 1183 1205 0.86

19 20 7 5e+02 2.7 0.2 3 23 1211 1232 1210 1232 0.91

20 20 0.0013 0.092 14.4 0.3 1 23 1287 1310 1287 1310 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.0047	0.34	12.6	0.6	1	23	355	378	355	378	0.93
2	20	0.024	1.7	10.4	0.3	2	23	404	426	403	426	0.94
3	20	0.28	20	7.0	0.7	1	23	432	454	432	454	0.98
4	20	0.062	4.4	9.1	0.5	1	23	470	492	470	492	0.98
5	20	0.00034	0.024	16.2	1.5	1	23	548	571	548	571	0.97
6	20	0.0048	0.34	12.6	0.2	2	23	576	598	575	598	0.96
7	20	0.089	6.4	8.6	0.7	2	21	631	650	631	651	0.95
8	20	0.054	3.8	9.3	4.8	1	23	665	688	665	688	0.93
9	20	1.4	1e+02	4.8	0.1	2	23	768	790	767	790	0.93
10	20	0.0058	0.41	12.4	0.3	1	23	796	819	796	819	0.97
11	20	0.35	25	6.7	5.3	1	23	827	849	827	849	0.98
12	20	6.2	4.4e+02	2.8	0.0	10	23	898	912	889	912	0.90
13	20	0.00091	0.065	14.9	1.7	1	23	915	938	915	938	0.94
14	20	0.56	40	6.1	0.4	2	23	945	967	944	967	0.96
15	20	0.015	1.1	11.1	1.2	1	20	1005	1024	1005	1026	0.96
16	20	0.058	4.2	9.2	0.2	1	23	1041	1064	1041	1064	0.96
17	20	0.88	63	5.5	0.3	2	23	1094	1115	1093	1115	0.93
18	20	0.14	10	8.0	0.2	2	23	1183	1205	1183	1205	0.86
19	20	7	5e+02	2.7	0.2	3	23	1211	1232	1210	1232	0.91
20	20	0.0013	0.092	14.4	0.3	1	23	1287	1310	1287	1310	0.98

Sequence Information

Coding Sequence: ATGGAGACTAACAAAAGGATCGTCGATCCTTGTATTCGATGTCGTCTTTGTGCCGCAGACGAAGCTTTCAAAGTGGACATATTCGGCGTGGACGGCTTATCCCGAAAATTGGTTGACAAAATCCAGACGTGCCTTCCAATAGCTATTGTCTCCAACGACCGACTTCCCAAGTCGATCTGCTATCGTTGCATGTATCTTCTCGAGAAGTTCTATGAATTCCGACAAGCTTGTCTGAACGCTAATGACTTATTGGAAGACTGCATCTTGCAGTATGAACTACACAATGTCTTGGAGGCAAACACGAAGCAGCATGAGTTGACGTCGATTGAAAAACATGTTGCAGCCGCTAAGAAGAAAGTTCCCAATGATTCCATTCCACGTCTTGATGCTGAGACGTCTCCCAACGCCACTGCGATGGAGTCCGAGGGCTCCGACAGCCCGGCACCGGACACGAACAGCTCCGACATTGAAGTCCTCTCCAACGCAGCCAGCTCGAAGCCCGTCTCTCCGGTGGCGTCGACGTCCAAAGACGGCGGCGAGGTGAAGAACACGCAGACCGTGTACCGCACTCTGCAGCGGCCCAAGGGCAAGCAGGCCGGGGAGAAGACGCCGAGAGTGCTGAGTCAGTCCAAGAGCGGCATCGTCACTTCCACACCGCTTGTTCCGGGAGGCGCCGGCGTGATCGATCTGACGGAGGAGCGCCTGTCCACCGAGCGAGGCCGCGCGCGCCGCCGCTCGGCCACCAACGACAAAAGCCTGCTCAAGGAGACGTTGTTGCGCAACGAGAAGCGGTCGCGACGCAGGTCCAGCTCGGTGGAGATCGAGGAGGTGGAGGTGCTGGCGGCGGTGACGGCCGGCACGAGCGAGGCCGGTCGTAAGAGGAGGCCCAGCATCAAGGTCCTGGAGAACGCCGACCGACGCCGGCTGTCCACCAGCTCCCTGCCCAACGGCTCTCTCCTCGACGAGGAGGCCGGCGCGTCGCGGCGCAAGAGCGCCAAACCGCGCCGTATCGCGCGCCCCCACCACAGCGACGACATGGACGTCGACGACGGCGACCGGCCCTACTCGTGCATGCTCTGCGAGAAGAGCTTTACGCTGAAGAACGCCCTGTCGCGCCACTTCAACGCGGCGCACGGCGACGAGATGACGGAGAGCAGGCGGGAGCAGGACGTGGAGTACATCGAGGGGGACGAGGGCGGAGCGCAGGTCAGCTGCGAGATCTGCTTCAGGACCTTCCAGGACAAGGCGAGCATGTGGCTGCACCTGATGTACTCGCACCGCGACGTCGCGCCCTACGTCTGCGGCCTGTGCCTCAAGGTGTGTCTGAACAACGTGGAGCTGTCCCGGCACTGGAAGAGCCACTACTCGGCTGGCGGCGACGCGGAGGCTGTGCCCATGGACCGCAGGTACTCGTGCGAGATCTGCGGCCGGCAGGACAACTCGCGCAAGAAGCTCGTGAACCACCTGAAGATCCACGTGTTCGACTCGTCGCTCGACCCCGACATGCTGGTGATGGTCAACGCGGACTACTACAACGCCGACAGCCAGGCGTACGACTTCGGCGACGACGACGAGgaggacgatgacgacgacgccGGCAGCTACGGAAATGACGGCGGGGATTTCTCGCCGCTGCCGTACCATCCCTGCAACCTCTGCTTCAAGGCGTTCGAGACGGAGGAGACCCTGCTGAAGCACCGGCGGACAGTGCACAAGTCGGTGACGCAGTGCCAGGTGTGCGAGGAGACCTTCGAGACGGAGATGCAGCTGATGCAGCACGTCACCACCGAGCACTACGACGGCAACCACATGCTCGCCGAGCACGGCTTCAACCCGTTCGAGCCGCTCGTCGGATTCCACACGGACGAGGGCGGCGTGGGTGGCGTAGCTTACTGCAAGCACTGCTCCCTGCAGTTCCCCAGCAGCAAGGAAGCGGAGCGGCATCAGCGGGGCTGCAAGGCGGACCCCAAGCGGCAGCAGGAGAACTGCTCGCACCACTGCGAGCTCTGCTCCAAGTCCTTTATCTCCGAAGACTGTCTAGTGAAGCATAAGAAGGGTGCCCACAAGATCCGGGACACACCCACCCCCTCCAAGCCGCTCGGCTACAACTCCTTCTACTTCTGCGAACTCTGCGGCAGCTCACATCCAACCAAGGTGCACCGGTGGCGCCACGTGGTGGCCGCGCACTCCGACGAGGCCGCCATCCGCTGCGACTACGCCGACTGCGGGAAGATCTTCGCGTGTGAGACCCTGGCCGTCGAGCACCGCTCCCACCACGACCTGCAGGGGCCGCTGCCGAGCACCTGCGAGCTCTGCGGCAAGCTGTGGAATAGCCGCGTCGAGTACTGGAAGCACATCCAGGGCGTGCACCCGGAGATGATGCCGTACATCTGCGGCGTGTGCCTGAAGATGTACAACGACACCGCCTCGCTGATCCACCACGTGAAGACGGCGCACACGCCGCTAGACCCCGTCGGCTACCACTGTCCTGTGTGCGCGCGCCAGTACACCAACCAGAGCAAGTGCTCGCGCCACCAGAAGATCCACGACGCGACGGCGCCCAAGGCCGGCGCCGCCGAGGCGCGCGCGTCCCCGGAGAAGGCGGTGAAGAAGAGGCCGGTGGCGACGGCGACGCGGCAGGCGCACGACGTCACGGCGCTCTGGTGTGATGCGTGCCCCGAGACGTCCAACTTCCCGACGCTCTCGGACCTGGCGGACCACCGTCGGGTCGCGCACTCGCTCCACCCGTGCGACCTGTGTCCCAAGTTCTACGGCCGGAACTCGCACCTGTGGAAGCACGTGGACAAGATACACCGCGGCGACCCGCTGGTCACCTGCGACCTCTGCCAGACGGTGTCCGCGACGATCGCGCAGCTGGCTCTGCACCACAAGAAGATGCACCGCGCGGAGAAGGCGGGCGACTGCGTGATGCTGGACGCCGAGGACCTGGACGGAGCCACGGGCCACATCCTCTCCATCCCCACGCCCAAGCCGGCCGCGCAGGCGGAGAGCTACAGCTGCGAGCTCTGCGAGAAGACATTCCTCAAGCGGTACCTGTTAAACAAGCACATGACGTTCTGCAGCAAGCGGTCGCACCGCGCGCCCCGGCCCTCGGTCAGACACCCGTGCGACCGGTGTCCGCTCGACTTCCCCGTCAAGTCGCGACTTGACGACCACATACGCAGCGCCCATAAGGTGGAGCAGTGTTCGCTGTGCGAGAGCGCTCACCCGTCGCGCACCTCGCTGCTGCGCCACGTGACGGCAACGCACGAGGAGCTGCGGTGCGCGACGTGCGGCCGCTTCACGCGCAACCCCGAGGACCGCGACGCGCACCGGGAGCAGCACGAGACCATGGAGGATCCGCCATGCTGCGAGGCATGCGGCGAGGTCACCGCCACGACCACGCGCATGTGGAGCCACCAGAACGCTCAGCACAAGGACGACCTGTCGCTGCTGTGCGGCGTGTGCTTCGCGCGCCTTCCTTGCATCTCCACGCTGCGCGCCCACGTGTCCTCGCGCCACCCGGACGCGCTGCACGCCGACAACACGTGCGCGGTGTGCGGCAAGACGTACTCGCGCGCCGGCCGAGTGCTGGAGCACTTTGCGCGCTTCCATCCCGAGCTGCGCGCGTGCCGGCAGTGTCTGTCGGTGTTCGACGACGAGGAGTCGATGAGGAGGCACGTCGAGGAGACGCATCGCTCCGAGGAGGACGAGCAGAAGGAACCCGCGCCGGCCCCCGCCACCCCCAGCACGCCCCCTCCGGTGATCAGCCCCCCGGCGGTCGTCAAGGAGAAGGCGGATAAACCGCCGAGCACCCCGGCGGCCACCCCCTCCCCTCGGCAGCGCACCAAGCGGTCGTACTCGTGCGACCGGTGCGCGCTGACGTTCGCCAAGCCCTCAGAGCTGAGCGTGCACCGCAGGCGACTGCACACGCTCGGCGGCCCGCGCATCGACAAGAACGAGTCTACGAGCGAGGAGCAGAGCGAGGAGGGTCAGGGCGACGAGGACGAGCCGCCCGCCAAGCGCAAGCGCGTGACGGACTCGCCCGGCGCGGAGATGCCCGTGCTCTCGCCCAACGAGGCCAAGCACACGCCCGACGACGACTCCACGGCCAGCGGCTCGGAGATGCCGAGGCTCGTCAAGTTCGTGCCGAGCGGCTCCAACGACGAGGACTCGAGCAGCAGCGTGGAGCCGTCGCCGGACGAACTGGCGGTCCTGGCCGACAAGGCTCTCGTGATGAAGCACCTTGGACTGGCGGAGTTCACGGGCAACGTGCGGTCTCGGTCTGCGGACCCCGGCGACAAGGTGCCCAAGACCGAGCCCGGCGACGGCGAGACGGACTGCTTGAACTCTCTGGAAGACGCGCTCGCCATCCTCGAGGCCCAGAACTCCGGGAGCTAA
Protein Sequence: METNKRIVDPCIRCRLCAADEAFKVDIFGVDGLSRKLVDKIQTCLPIAIVSNDRLPKSICYRCMYLLEKFYEFRQACLNANDLLEDCILQYELHNVLEANTKQHELTSIEKHVAAAKKKVPNDSIPRLDAETSPNATAMESEGSDSPAPDTNSSDIEVLSNAASSKPVSPVASTSKDGGEVKNTQTVYRTLQRPKGKQAGEKTPRVLSQSKSGIVTSTPLVPGGAGVIDLTEERLSTERGRARRRSATNDKSLLKETLLRNEKRSRRRSSSVEIEEVEVLAAVTAGTSEAGRKRRPSIKVLENADRRRLSTSSLPNGSLLDEEAGASRRKSAKPRRIARPHHSDDMDVDDGDRPYSCMLCEKSFTLKNALSRHFNAAHGDEMTESRREQDVEYIEGDEGGAQVSCEICFRTFQDKASMWLHLMYSHRDVAPYVCGLCLKVCLNNVELSRHWKSHYSAGGDAEAVPMDRRYSCEICGRQDNSRKKLVNHLKIHVFDSSLDPDMLVMVNADYYNADSQAYDFGDDDEEDDDDDAGSYGNDGGDFSPLPYHPCNLCFKAFETEETLLKHRRTVHKSVTQCQVCEETFETEMQLMQHVTTEHYDGNHMLAEHGFNPFEPLVGFHTDEGGVGGVAYCKHCSLQFPSSKEAERHQRGCKADPKRQQENCSHHCELCSKSFISEDCLVKHKKGAHKIRDTPTPSKPLGYNSFYFCELCGSSHPTKVHRWRHVVAAHSDEAAIRCDYADCGKIFACETLAVEHRSHHDLQGPLPSTCELCGKLWNSRVEYWKHIQGVHPEMMPYICGVCLKMYNDTASLIHHVKTAHTPLDPVGYHCPVCARQYTNQSKCSRHQKIHDATAPKAGAAEARASPEKAVKKRPVATATRQAHDVTALWCDACPETSNFPTLSDLADHRRVAHSLHPCDLCPKFYGRNSHLWKHVDKIHRGDPLVTCDLCQTVSATIAQLALHHKKMHRAEKAGDCVMLDAEDLDGATGHILSIPTPKPAAQAESYSCELCEKTFLKRYLLNKHMTFCSKRSHRAPRPSVRHPCDRCPLDFPVKSRLDDHIRSAHKVEQCSLCESAHPSRTSLLRHVTATHEELRCATCGRFTRNPEDRDAHREQHETMEDPPCCEACGEVTATTTRMWSHQNAQHKDDLSLLCGVCFARLPCISTLRAHVSSRHPDALHADNTCAVCGKTYSRAGRVLEHFARFHPELRACRQCLSVFDDEESMRRHVEETHRSEEDEQKEPAPAPATPSTPPPVISPPAVVKEKADKPPSTPAATPSPRQRTKRSYSCDRCALTFAKPSELSVHRRRLHTLGGPRIDKNESTSEEQSEEGQGDEDEPPAKRKRVTDSPGAEMPVLSPNEAKHTPDDDSTASGSEMPRLVKFVPSGSNDEDSSSSVEPSPDELAVLADKALVMKHLGLAEFTGNVRSRSADPGDKVPKTEPGDGETDCLNSLEDALAILEAQNSGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -