Basic Information

Insect: Leuctra nigra
Gene Symbol: -
Assembly: GCA_934046545.1
Location: CAKOHC010000401.1:191087-192712[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0043 0.31 12.8 0.4 1 23 122 144 122 144 0.96

2 14 0.018 1.3 10.8 0.8 1 23 154 176 154 176 0.98

3 14 0.0017 0.12 14.0 5.1 1 23 182 204 182 204 0.98

4 14 0.00024 0.017 16.7 1.6 1 23 210 232 210 232 0.97

5 14 0.12 8.8 8.2 1.4 1 22 238 259 238 259 0.96

6 14 0.026 1.8 10.3 5.3 1 23 266 288 266 288 0.99

7 14 0.0031 0.22 13.2 6.0 1 23 294 316 294 316 0.98

8 14 0.073 5.2 8.9 0.4 1 23 322 344 322 344 0.97

9 14 0.0021 0.15 13.8 2.5 1 23 350 372 350 372 0.99

10 14 0.00094 0.067 14.8 2.7 1 23 378 400 378 400 0.99

11 14 0.23 16 7.3 10.0 1 23 406 428 406 428 0.98

12 14 5.7 4.1e+02 2.9 3.9 2 23 463 484 462 484 0.96

13 14 0.0037 0.26 13.0 1.3 1 23 490 512 490 512 0.98

14 14 0.0029 0.21 13.3 1.6 1 23 518 541 518 541 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0043	0.31	12.8	0.4	1	23	122	144	122	144	0.96
2	14	0.018	1.3	10.8	0.8	1	23	154	176	154	176	0.98
3	14	0.0017	0.12	14.0	5.1	1	23	182	204	182	204	0.98
4	14	0.00024	0.017	16.7	1.6	1	23	210	232	210	232	0.97
5	14	0.12	8.8	8.2	1.4	1	22	238	259	238	259	0.96
6	14	0.026	1.8	10.3	5.3	1	23	266	288	266	288	0.99
7	14	0.0031	0.22	13.2	6.0	1	23	294	316	294	316	0.98
8	14	0.073	5.2	8.9	0.4	1	23	322	344	322	344	0.97
9	14	0.0021	0.15	13.8	2.5	1	23	350	372	350	372	0.99
10	14	0.00094	0.067	14.8	2.7	1	23	378	400	378	400	0.99
11	14	0.23	16	7.3	10.0	1	23	406	428	406	428	0.98
12	14	5.7	4.1e+02	2.9	3.9	2	23	463	484	462	484	0.96
13	14	0.0037	0.26	13.0	1.3	1	23	490	512	490	512	0.98
14	14	0.0029	0.21	13.3	1.6	1	23	518	541	518	541	0.98

Sequence Information

Coding Sequence: ATGATTAATGAGGCATCAGGTTCTCGTGAACAAAAAGCAGAGACAAGTCAACCAGATTGTTTAACTGAATATACCAAACGTAAATATCGGATAAGAGAGTGTTCTGTATCACTCAGAAGAGAAGAGTTTGATGGTCAAGTCAATGAGAACTTCTCGGCTGCAGTCAGCAGTTCGCTGTCTCTTCCAAGACACGGTGGCCGCAAGACGTATCCTGCCGTTGCCCGCGCTACACCGGAAGCCACGCAGGACCAACTCGCCACAACTAGCGGCCTGCACAAGGAGAGGAGCAAGGAGTGGACAGTGTCCAGTGCCAACATTAACAATGTGTCACATCACATGCTTGTTCCTGCCACCGCCAGACACTACGACTGCGCACACTGCCCCGCCAAGTTCAGGACACGGGATGGAATTAAACAACATCTTGTTGTGCACCAGCTAACTCACACCACAGACCGACTATTCTCTTGTGAATCTTGCACTTACAGTAGTGCCATTAGGAGGTACCTTGTAAGACACATGAAGGTTCATTTCTCTGAGAAGCCGCACAGATGCACTCAATGTGAGTATAAAACGAACCGTAAGCGTAACCTGGTCGACCACCAACGCAGGCATACGGGCGAGCGATCTTACGCATGCAATGTTTGTTCCTACAAGTCGTACACCAACAGCAACCTATTCAATCACCAGAAGATCCATTTCTCTGAGAAGCCGTTCCAATGCTCTACATGCGAATATAGAACAAACATCCACAGAAACCTCGTCATCCACCAACGCAAGCAATCCTCTGAGGAGCCGTTCCAATGCACAACATGCGAATATAAGACACACTTTAAGAGTAGCCTCGTCCTCCACCAACGCAAGcattcctctgagaagccgCACAGATGCACTTTTTGTGAGTATAGAACGAAACGTAAGAGTAAACTGGTCGACCACCAACGCAGGCATACGGGTGAGCGGCCGTATGCCTGCAATGTTTGTTCCAACAAGTACTTAACCAGAAGCGACCTTATCATTCACAAGAAGGTccattcctctgagaagccgTTCCAATGCTCATCGTGCGAATATAAGACTAACTTTAAGAGTAGCCTCGTCGTCCACCAACGCAAGcattcctctgagaagccgTTCCAATGCACAACTTGCGAATATAAGACAAACAGAAATACTAGCCTCGTCCTCCACCAACGCAAGcattcctctgagaagccgCACAGATGCACTTTTTGTGAGTTTAGAACGAAACATAAGAGTTGCCTAGTCGTCCACCAACGCAGGCATACGGGTGAGCGGCCGTATGCCTGCAATGTTTATTCCAACAAATACTACACCAGAAGGCACCTATTCATTCACAAGAAGGTccattcctctgagaagccgTTACATTGTTCTACTTGCGAATATAAGACACACATCAAGAGTGTCCTCGTCATACACCAACGCAAGcattcctctgagaagccgTACGCCTGTGCACTTTGCACCTACACTTGTGCCAACAGCAGCGGGCTGGTTTACCACAGGAAGACACACTTATGCGTCAAAGCCTTCCAGTGTGCCCACTGCGTCTATTCGACCAATGCCAAGAGTAGCCTGGCTGTTCACATGAAGCGACGCCATTAG
Protein Sequence: MINEASGSREQKAETSQPDCLTEYTKRKYRIRECSVSLRREEFDGQVNENFSAAVSSSLSLPRHGGRKTYPAVARATPEATQDQLATTSGLHKERSKEWTVSSANINNVSHHMLVPATARHYDCAHCPAKFRTRDGIKQHLVVHQLTHTTDRLFSCESCTYSSAIRRYLVRHMKVHFSEKPHRCTQCEYKTNRKRNLVDHQRRHTGERSYACNVCSYKSYTNSNLFNHQKIHFSEKPFQCSTCEYRTNIHRNLVIHQRKQSSEEPFQCTTCEYKTHFKSSLVLHQRKHSSEKPHRCTFCEYRTKRKSKLVDHQRRHTGERPYACNVCSNKYLTRSDLIIHKKVHSSEKPFQCSSCEYKTNFKSSLVVHQRKHSSEKPFQCTTCEYKTNRNTSLVLHQRKHSSEKPHRCTFCEFRTKHKSCLVVHQRRHTGERPYACNVYSNKYYTRRHLFIHKKVHSSEKPLHCSTCEYKTHIKSVLVIHQRKHSSEKPYACALCTYTCANSSGLVYHRKTHLCVKAFQCAHCVYSTNAKSSLAVHMKRRH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -