Basic Information

Insect: Leuctra nigra
Gene Symbol: Prdm9_1
Assembly: GCA_934046545.1
Location: CAKOHC010004034.1:18003-26710[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00096 0.069 14.8 4.2 1 23 898 920 898 920 0.98

2 9 3.7e-05 0.0027 19.3 1.1 1 23 926 948 926 948 0.97

3 9 7.8e-05 0.0056 18.2 3.0 1 23 954 976 954 976 0.99

4 9 0.00097 0.069 14.8 2.1 1 23 982 1004 982 1004 0.99

5 9 0.00097 0.069 14.8 2.1 1 23 1010 1032 1010 1032 0.99

6 9 6.4e-05 0.0046 18.5 1.5 1 23 1038 1060 1038 1060 0.99

7 9 0.00091 0.065 14.9 2.2 1 23 1066 1088 1066 1088 0.98

8 9 0.019 1.4 10.7 1.4 1 23 1094 1116 1094 1116 0.99

9 9 0.35 25 6.8 0.5 1 16 1122 1137 1122 1138 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00096	0.069	14.8	4.2	1	23	898	920	898	920	0.98
2	9	3.7e-05	0.0027	19.3	1.1	1	23	926	948	926	948	0.97
3	9	7.8e-05	0.0056	18.2	3.0	1	23	954	976	954	976	0.99
4	9	0.00097	0.069	14.8	2.1	1	23	982	1004	982	1004	0.99
5	9	0.00097	0.069	14.8	2.1	1	23	1010	1032	1010	1032	0.99
6	9	6.4e-05	0.0046	18.5	1.5	1	23	1038	1060	1038	1060	0.99
7	9	0.00091	0.065	14.9	2.2	1	23	1066	1088	1066	1088	0.98
8	9	0.019	1.4	10.7	1.4	1	23	1094	1116	1094	1116	0.99
9	9	0.35	25	6.8	0.5	1	16	1122	1137	1122	1138	0.94

Sequence Information

Coding Sequence: ATGGAGCCTACTACACTTGCTGAATTAGCTAAGTATTTCCACCCACAAGAGTGGAAGACTATGCCACCTTACGAGAGGGACAGAATTATCAACACCCACAATAATTGGATGGAGATGAAGACCCTAGGCTTGAATCCACCGTTGCCTGGGTTTATGAGGAGGACACTGCATCCACTGAAGCCTACAGTTAAACAGACGGTTGAACCCAAGCATGTACTTAAACAGACGGTTGAACCCAAGCCTACAGTTAAACAGACGGTTGAACCCAAGTCTGCGGTTGAGCAAGCTGAAGCCATGTCTGTGGCTGCGGTGAAACAGACAACTACTAAACCAATGCCGGGAGTTAAACCGAAGTCTGTGTTTCAATCAGCGCAGAAGCGAGTTAAGCCACCACAGATGCCTGTAAGAGATACAGAAGTGGCTCTGTCAGCAGCCAAGGATAAGGTGAAACCTGTTATGACAGATGCACCGGTCGAAAATGTCGCTCAGGAGATAGCCGAAGAAAATGCGGCAAAGCCTGTGAAGACTCCAGCCAAGCCAACTGCTTCACCGGCTGATAAAACGAAGGAGAAAGATGCAGTGAAGTCGGTTGCCAAGCTAGATGTCGTGCCGGCCAAAAATGCCGAGGAGAAAACCCAAGAATACGCGGCAAAGCCTGTGAAGACTCCAGCCAAGCCAACTGCTATACCGGCTGATAATACGAAGGAGAAAGATTCAGTGGTGTCTGTTGCCAAGCTAGATGTGCCGGCCGAACATGCCGAggagaaagctgacgaaaaagTAGAAAAGACTGTAAAGACTCCAGCCAAGCCAACTGCTATACCAGCTGATAATACGAAGGAGAAAGATGCAGTGGAGTCTGTAACCACGCCATATGTTGTGCCAGCCGAAAATGCCGAGGAGAAAGCTGAAGAAAAAGTAGAAAAGACTGTAAAGACTCCAGCCAAGCCAACTGCTATACCAGCTGATAATACAAAGGAGAAAGATTCTGTGGTGTCTGTTGCCAAGCTAGATGTGCCGGCCGAACATGCCGAggagaaagctgacgaaaaagTAGAAAAGACTGTAAAGAGTCCAGCCAAGCCAACTGCTATACCAGCTGATAATACGAAGGAGAAAGATGCAGTGGAGTCCGTAACCACGCCATATGTTGTGCCAGCCGAAAATGCCGAGGAGAAAGCTGAAGAAAAAGTAGAAAAGACTCCAGCCAAGCCAACTGCTATACCAGCTGATAATACAAAGGAGGAAGATGCAGTGGAGTCTGTAGCCACGCCTGTTGTCGTGCCAGCCGAAAATGCCGAGGAGAAAGCCCAAGAAAACGAGGCAAAGCCTGTGAAGACTCCCGCCAAGCCAACTGCTTTACCGGCCGATAAAAACAAAAGTAATGATATTAAATCGGCAGGGAAACGTGGGAAGACTCCTGCAAAGTCAGCCGACGTACCAACCGATTCCAAAGACAAGAAAGGCAATGAATCAGCAGTGAAACGTGGGAAGATTCCTGCCCAGTCAGTCGAGGAACTGGCCAATTCCAAAGACAAGAAATTCAAAGACACCAATAAGAAGACTGTCACAGAACCAAGCATCACCGAAGAGACTTCAAATCCGCGATATCCCAAGCGAAACATCAAGAGCTTGAATTACACCGAGAAAGAGAATTTGAAAGACGATGACTACATTTTTTGTGACTTTTGCCAAGTAGAATACGAAGGAGAATGTCCGGAACACGGAGCTCTCAAGGCAGTTAAAGACAAAGCCGTTCCAGCTAACTACGAAGGTGATGATCGCGCTAAGAAGACAGCGCCCCGCGTGTTGGTCATCTGTGAGTCCAGCATCAAGGGAGCAGGACTCGGGGTCTGGACCACGGAGAAGGTAGAAATGGGCACTCTCTTCGGACCTTATGAAGGCGTCGAGAAGCCGTTCTCAAATAAGGTTTCCGGCTATGGCTGGGAGATAAAAGGTTCAAAAAAAGAAGCAACCACTATCGATGCAGCAGACAGCAGCAAAAGTAACTGGATGAGATTTGTCAATTGTGCTCGATACAAAGAAGAACAAAATCTAATCGCTTTCCAGTTCAAACGCAAGATGTTTTACCGCTCACACTGGGATATTGAACCCCACAAAGAACTCTTGGTGTGGTACGGTGACGCCTACGCTAAGCGTCTGGGCATCGATGTGAAGGGATTCCACGCTAACAAGCCCAAGCCCAAGGAAACCCGGTGTACTTGCTCCGCCATCGCTGCTACAAGCGTTACACTCCAGCCACTGCAGCTCAGCCATCCACTTCTGCTCAACCATCCACTTCTGCTCAGCCATCCACTTCTGCTCAACCATCCACTGGTGCTCAACCATCCACTTCTGCTCAGCCATCCACTTCTGCTCAACCATCCACTTCTGCTCAGCCATCCACTTCTGCTCAACCATCCACTGGTGCTCAACCATCCACTTCTGCTCAGCCATCCACTTCTGCTCAACCATCCACTTCTGCTCAGCCATCCACTTCTGCTCAGCCATCCACTTCTGCTCAACCATCCACTGGTGCTCAACCATCCACGGCAGCTCAAGCATCCACTTCTGCTCAACCATCCACTGCTGCTAAACCCGCTGCCAACATCCCAGGCAAGAGTGTCACTAAGAGTCAGCGACTCTGACGTGCAACGCAGCAAGGAGACGCAGAAGAAGCCACATCGTGCACACAAGTGTGACGAGTGTGAAGCTGCATTCACATACCCATGTCACCTAGCACGACACAAGCGCGTACATACCGGCGAGAAGCCGTTTGCTTGTGAGCAGTGTGAGTACGCATGTAACCAACAAGGAGACTTGAAGAAACACATGAGGATTCACAGTGGTGAGAAGCCATTCAAATGCAGTGAGTGTGATTATGCTACAGGTAATAGCAGCCACTTGACAACACACAAGCGCACACATACTGGCGAGCGGCCATACAGCTGTGATGTGTGTGACTATCAATGCAAGGAGAGCGGCAGCCTGACTGTCCACAAGCGCACACACACCGGCGAGAGGCCATACAGCTGTGATGTGTGTGACTATCAATGCAAGGAGAGCGGCAGCCTGACTGTCCACAAGCGCACACACACCGGCGAGAGGCCATACAGCTGTGATGTGTGTGACTATCAATGCAAGGAGAGCGGCAGCCTGACTGTCCACATGCGCACACACACGGGAGAGCGGCCGTACAGCTGTGATGTGTGTGACTATCAATGCAAGGTGAGCAGCTACCTGACTGTCCACAAGCGAGTCCACACAGGAGAGAAGCCCTATCAGTGTGATGTATGCAGCTACACATGTGCTTATAGTAACGTCCTTGCTACTCACAAGCGAGTCCACACGGGAGAGAAGCCCTATCAGTGTGATGTGTGCAGCTACACATGTGCTCGTAGTGGCCAACTTGCTGC
Protein Sequence: MEPTTLAELAKYFHPQEWKTMPPYERDRIINTHNNWMEMKTLGLNPPLPGFMRRTLHPLKPTVKQTVEPKHVLKQTVEPKPTVKQTVEPKSAVEQAEAMSVAAVKQTTTKPMPGVKPKSVFQSAQKRVKPPQMPVRDTEVALSAAKDKVKPVMTDAPVENVAQEIAEENAAKPVKTPAKPTASPADKTKEKDAVKSVAKLDVVPAKNAEEKTQEYAAKPVKTPAKPTAIPADNTKEKDSVVSVAKLDVPAEHAEEKADEKVEKTVKTPAKPTAIPADNTKEKDAVESVTTPYVVPAENAEEKAEEKVEKTVKTPAKPTAIPADNTKEKDSVVSVAKLDVPAEHAEEKADEKVEKTVKSPAKPTAIPADNTKEKDAVESVTTPYVVPAENAEEKAEEKVEKTPAKPTAIPADNTKEEDAVESVATPVVVPAENAEEKAQENEAKPVKTPAKPTALPADKNKSNDIKSAGKRGKTPAKSADVPTDSKDKKGNESAVKRGKIPAQSVEELANSKDKKFKDTNKKTVTEPSITEETSNPRYPKRNIKSLNYTEKENLKDDDYIFCDFCQVEYEGECPEHGALKAVKDKAVPANYEGDDRAKKTAPRVLVICESSIKGAGLGVWTTEKVEMGTLFGPYEGVEKPFSNKVSGYGWEIKGSKKEATTIDAADSSKSNWMRFVNCARYKEEQNLIAFQFKRKMFYRSHWDIEPHKELLVWYGDAYAKRLGIDVKGFHANKPKPKETRCTCSAIAATSVTLQPLQLSHPLLLNHPLLLSHPLLLNHPLVLNHPLLLSHPLLLNHPLLLSHPLLLNHPLVLNHPLLLSHPLLLNHPLLLSHPLLLSHPLLLNHPLVLNHPRQLKHPLLLNHPLLLNPLPTSQARVSLRVSDSDVQRSKETQKKPHRAHKCDECEAAFTYPCHLARHKRVHTGEKPFACEQCEYACNQQGDLKKHMRIHSGEKPFKCSECDYATGNSSHLTTHKRTHTGERPYSCDVCDYQCKESGSLTVHKRTHTGERPYSCDVCDYQCKESGSLTVHKRTHTGERPYSCDVCDYQCKESGSLTVHMRTHTGERPYSCDVCDYQCKVSSYLTVHKRVHTGEKPYQCDVCSYTCAYSNVLATHKRVHTGEKPYQCDVCSYTCARSGQLA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -