Lnig019180.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- -
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010001717.1:46894-82836[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.7 2e+02 3.9 1.2 2 21 19 38 18 39 0.91 2 18 1.1e-06 7.6e-05 24.1 0.6 1 22 46 67 46 67 0.97 3 18 0.0022 0.16 13.7 1.8 1 21 96 116 96 117 0.96 4 18 5.1 3.7e+02 3.1 0.1 1 9 125 133 125 141 0.83 5 18 0.41 29 6.5 6.5 1 21 515 535 515 536 0.97 6 18 0.007 0.5 12.1 3.2 1 21 544 564 544 565 0.94 7 18 0.00075 0.054 15.1 0.5 1 21 592 612 592 613 0.97 8 18 0.0013 0.095 14.4 5.7 1 20 621 640 621 646 0.93 9 18 0.00042 0.03 16.0 2.1 1 21 660 680 660 681 0.96 10 18 0.001 0.075 14.7 2.2 1 21 700 720 700 721 0.95 11 18 0.024 1.7 10.4 0.7 1 22 764 785 764 785 0.95 12 18 0.00025 0.018 16.7 3.4 1 21 808 828 808 829 0.96 13 18 4.1 2.9e+02 3.4 4.3 1 23 837 860 837 860 0.94 14 18 0.016 1.1 11.0 0.2 1 21 919 939 919 940 0.94 15 18 0.011 0.78 11.5 5.8 1 23 948 971 948 971 0.97 16 18 3.7 2.6e+02 3.5 3.6 3 21 1070 1088 1068 1089 0.89 17 18 0.028 2 10.2 2.5 2 21 1096 1115 1095 1116 0.92 18 18 0.06 4.3 9.2 0.2 1 21 1122 1142 1122 1143 0.93
Sequence Information
- Coding Sequence
- ATGATCATACCTCTTTCCTCTGGCAGCACTCGGTACGGCCAGAAGCGCTCTTTCCTCTGCGCCAATTGCAGCTCCACATTCCTGCACAAATCAACTCTTAATGTCCACCTCAAGTACTGCGGGAAACAATTAAAATTCCAGTGTCCAGTGTGTAAGAAGGTCTACAATCGAAAAGATAATCTGAACACGCATATCAGAAAGTCATGTGGACAGGAATATACTTGTCCTTACTtgatttACGCTGTTGGTTCCTCATGGCCTCGGGGCCCGACCGGTTCCGGACGATTCACTTGCACTGCTTGTCACCGTAGCTACAGTCAAATGACCAACCTCAAGACCCACATCAAGAACTTCTGTGGCAAAGAGCCGAGGTTTCAGTGTCCACATTGTCCGCACCGCGCCAAGCTCAAGACAGATATGATGCAAATTGAAGGACAGGCCAACGAATCGTGTTCCACTGAGAACATCTTGCCCGAGATAGATACAGATGGTTTCGTCTCCTTCCTGCTAACTGACTTTGAGCCTTGGCAGAAGGTTATCAAGTACTGGTCCATCACGTCAGCTTCTAGAAGAGATGTTGACAAAAACTTGACCGTTGCTGAAGTCTGTAACAAATATCCGGCCTTGCAACAGCATCTAGGATATACCTTGcTTGAGCTTGATTTCGAATCTCTATACGCGGATCGCGGAAACCGGCTTCTGGCTGAATGGCCCAAACTGGCGCCGGCTGTACTCACCTTGGCCAAAGCCAGACGCAGGAATCCTCAGCTTCAGACTCTTTTGAACAACTTTGCAAATATTCTGGACAGCGACGTCCTGGCGTTCATCGTCCTGCCCTACATGTTCCCGGTGATCACGTTGAAGAGGTACACGACGACGCAAGGCGCAGAAGCGGAGACCACAACGTCGGCGTGGCGGCCGAGCCAACTGGAGTCACAGGAGGGCTTCGTCATTCATCTCCACACTGCGGAGGAACTGCAAACTCGTTTGGATGAGAGGCAAGAGAAGTTCCGAAGTCTTCAGCGAACCATCCAACCTTACGTCGTCGCTGTTGGGAACAAAGGATGCAGTTCTTTCTACGCCGTCATCGACAAGACCGTGTACAAGCTGGACTCCATCGCCAGAGCTGTGGACATCTGTTTCAAATCAATCTTTGCACTTCAAACAACATTTCCTCCTGAGTCCAAGATGGTCTGGTTCTGGATTCAGAAATACATCTATAAGATCAAGTGCAATCTGTCCCTTGCTGGATTTTTACCGCGCGATTGGATTGCGCTCCGCCAGTACCGCGCGGAGTTATCAAACACTCCAGAGCGCAAGCCAAAAGAGTTACCAAACCAAAAAGAGCAGATCGCGCGCTGGCCGAGTGCTCGGAATGAGTTATCAAACACACCCACTAATGTGCAAATATTGGCCACGTACAACTCAGTAAGTCTGATCAGATCAGACTCACTCATTGATCAGGATGCCGTCAAGAAGATGATGCGAGACTTGGTTGGTACTTGGTCGCATGTTCGATCCCCGCCTACTGGAAACAAGCGCTACAAGTGTTCGAACTGTAGATCGAGCTACTGCAGCAAATACAGCTTGAGCTATCACATGAAACACGCTTGTGGAGTAGACCCGAAGTTCAAGTGTCCGAACTGTTCCTACTGCAGCAAGCGCAAGGCGGATCTGGCGAGACATTTCAAGAAGATCGGCGGATGCAACTCGACCGGGGCAGATTGTCCCAAGCAAATACACCCTGAAGATCCCAGGAACGCTGATCGACCATACAAGTGTCCTTCTTGCACCTCGAGCTACAAGGACATGAGCAATCTGAGGACGCACATCCGTCTTTACTGCGGCAAAGCTCCTCGATTCTCTTGTCCAAATTGCTCGCACAGATTCAAGCGAAAACACGACTTGAAGCGACATCTGTTTAGAAGATTCGTCCATGTAATGAACCTGGAGCCAGAAGCCGCGCAGCCTCAGAGCTTCAAATGTCCCATGTGCTCGGCCATCTACAACAACAAGTACAACTTTAACAGGCACATGAAACATTATTGTGCCTATTATCTCAGCGCCTTGACGACATTTGCTGCGGCGCCTGAGCGCTTCCAATGTCCGACATGCTCTGCGAGTTACAACAACAAATACAACTTCAACAGACACGTGAAACATTACTGCGGCAAACCGCCCAAGTTTCACTGTCCATATTGTTCCTTTTGCACGAAACTCAAATGTTTCTACGGAGCTATTCAAGATGCCAGCACACCTGTAATATCATGCTCATGGGAAGCCCAGCGATTTTACTGTCCGAACTGCAGTGCCGGCTACAAGAGCAAGAAGAACATGAACTATCATCTGAAGATGTTTTGCGGCAAAGTACCAGGGTTTCGCTCCTATAAGTACTGGCTGACGGACCCTAGCAGAAAGCGCTACACATGCGACAAGTGCCAGTGCAGCTACACGCGACGCGCCAACTTGAACACTCACATGAAGTATCTGTGTGGCAAACCACCGCGCTTCCACTGCTCGTGTTGTCCGTACGTCACCAAACTCAAGGCCGACCTCAAGAAGCACGTGTTGCGGAGACATCCAGCAGATTCACAGATGCAACCCTCTACGTTTGTTCGTGTTCGGTCACCCGAACAGAAGAGTCGGCGTGATTCCAAGGTTCCACTGCACGACCTGCAAGCGCAGTTACGCGTGCAAGGAAACTCTCAAGCGACACATCCCGGCTCCTGGCGGTCTACTAGTGATGAAAGACTGTTCGTCTGTGTGGCTTGCGGGAACTCTTACAAGACTCGTGGGAGTCTGAGTCGACACTTGAAGTATGAGTGTGGCCTTGAACCGCAGTTCCCCTGTCTCATCTGTTCTTACCGCTCCAAGCATCATTCGCATCTGGAGAGACATGTCAAGACTGTACACAAGATGACAATGTCGGAGGTCAATCTAGGGGAAGGCATTTACAGATTGGAGACTGGTCCCAAAGCGTTCAATAAAAGCGGAGACAACTGGATTCCAGTCATCAAATCAGTCTCCAGTTCTCAAGGTATTTCGCGGTTCTTCTGCGAGCGATGTGGTTCCGATTTCCACTGCGAATATCTCCTGAAGAAACATCTGAAAGAGAATCACAGCATCGAAGAAGAGATCGACGATCCACACGACAAGATCCTATTCCGTCAGTTGATGATGCCGCCTGATAACAGGAAGAAGCACAACTGCATCAATTGTAATACAAAGTTCAAACACATCGGTTCGCTGAATTACCATTTGCGTCATGAATGTGGCAAGGAATTGGTCTGTCGACAGTGCAAGAAGGTTTTTAAGTACCACACCCATTTGGTGTCACACGAGAAGTATAAGTGTGATAAAATACATCAGTGTCCCCATTGTGAGGAGGTTTTCATTGGTAGACGGATCCTGAAGGCTCATGTTAGATTGTGTCGTGTACAGTGGCCGAAAGTGCCGATTAAGATTGAAGAGCCATTGGGTTAG
- Protein Sequence
- MIIPLSSGSTRYGQKRSFLCANCSSTFLHKSTLNVHLKYCGKQLKFQCPVCKKVYNRKDNLNTHIRKSCGQEYTCPYLIYAVGSSWPRGPTGSGRFTCTACHRSYSQMTNLKTHIKNFCGKEPRFQCPHCPHRAKLKTDMMQIEGQANESCSTENILPEIDTDGFVSFLLTDFEPWQKVIKYWSITSASRRDVDKNLTVAEVCNKYPALQQHLGYTLLELDFESLYADRGNRLLAEWPKLAPAVLTLAKARRRNPQLQTLLNNFANILDSDVLAFIVLPYMFPVITLKRYTTTQGAEAETTTSAWRPSQLESQEGFVIHLHTAEELQTRLDERQEKFRSLQRTIQPYVVAVGNKGCSSFYAVIDKTVYKLDSIARAVDICFKSIFALQTTFPPESKMVWFWIQKYIYKIKCNLSLAGFLPRDWIALRQYRAELSNTPERKPKELPNQKEQIARWPSARNELSNTPTNVQILATYNSVSLIRSDSLIDQDAVKKMMRDLVGTWSHVRSPPTGNKRYKCSNCRSSYCSKYSLSYHMKHACGVDPKFKCPNCSYCSKRKADLARHFKKIGGCNSTGADCPKQIHPEDPRNADRPYKCPSCTSSYKDMSNLRTHIRLYCGKAPRFSCPNCSHRFKRKHDLKRHLFRRFVHVMNLEPEAAQPQSFKCPMCSAIYNNKYNFNRHMKHYCAYYLSALTTFAAAPERFQCPTCSASYNNKYNFNRHVKHYCGKPPKFHCPYCSFCTKLKCFYGAIQDASTPVISCSWEAQRFYCPNCSAGYKSKKNMNYHLKMFCGKVPGFRSYKYWLTDPSRKRYTCDKCQCSYTRRANLNTHMKYLCGKPPRFHCSCCPYVTKLKADLKKHVLRRHPADSQMQPSTFVRVRSPEQKSRRDSKVPLHDLQAQLRVQGNSQATHPGSWRSTSDERLFVCVACGNSYKTRGSLSRHLKYECGLEPQFPCLICSYRSKHHSHLERHVKTVHKMTMSEVNLGEGIYRLETGPKAFNKSGDNWIPVIKSVSSSQGISRFFCERCGSDFHCEYLLKKHLKENHSIEEEIDDPHDKILFRQLMMPPDNRKKHNCINCNTKFKHIGSLNYHLRHECGKELVCRQCKKVFKYHTHLVSHEKYKCDKIHQCPHCEEVFIGRRILKAHVRLCRVQWPKVPIKIEEPLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -