Lnig027738.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leuctra nigra
Gene Symbol
-
Assembly
GCA_934046545.1
Location
CAKOHC010002871.1:17494-43198[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 8.8 6.3e+02 2.3 0.7 1 10 273 282 273 286 0.90
2 9 2.4e-06 0.00017 23.0 2.5 1 23 415 437 415 437 0.98
3 9 8.4e-06 0.0006 21.3 2.1 1 23 443 465 443 465 0.97
4 9 0.0068 0.48 12.1 2.4 1 23 471 493 471 493 0.98
5 9 1.3e-05 0.00092 20.7 3.4 1 23 620 643 620 643 0.98
6 9 5.5e-07 4e-05 25.0 2.7 1 23 659 681 659 681 0.98
7 9 0.022 1.5 10.6 5.2 1 23 786 810 786 810 0.93
8 9 0.00068 0.049 15.3 9.5 3 23 846 866 844 866 0.95
9 9 0.0012 0.086 14.5 0.5 2 23 940 961 939 961 0.96

Sequence Information

Coding Sequence
ATGCCTATAACATCGGAATCGTCAACAGAGGCGCAATGCCGTCTGTGTGCCTCATCAGCAAAAGGTgacattattgaaatttttggtGAGGACGGAAAGACCCGAAATTTAGCGAAAAAAATCGAGGAATGTCTTCCAATTTCCGTGTCACGCGGAGATTGTTTCCCAAAGTCCATTTGCTTGATTTGCCTTGAAAAACTGGAACAGTTTAACAATTTCCGAGAAGATTGTATCAAATCCGAGCGATCTTTTGAAGCAACTTGGAGTAATGTCCATCCAGACCAAAACATAGAATTCTCATTGGAACCCGAGTGTTGCCTGCAAGAAGTGGAGCAGGAAGAACCGGAGAACAACGCTCTGCTGTTCCAGAAGCCCGTCGTTTCACCCGCCAAGGAACAACACCAGGAACAACGCAGCAATGGGTTGTTCCAACCGGAGAACATTCCACTGCCAAAGAAGTCTCATAGAGGCCTGGCTGATTTCATCATCACCCCCATCATGGCAATTCCCAAGGTCAACAAGCCGCTGGGTTCGACTCACGACTCCAAGCTGCGACTGTCGCTGAAGCCTCACGCCTCGCCTCGGTACAATTTCCCACAGATCGGAGTGTTGAATCCGGACGACTACATCCTGATGTACGAGGAGCATCTTCCGGACTCCACCTCCGGACTCCCGGAGTACCGGGACGGGcgggaggaagaggaagagcggAGGAAGAACCAAGTCCTGCCGCCTATGTGGGACGTCTACGAGAAGATCACCGACGGCGGAGAGGCAAAGTTCCTGCATAGGAGATACATCATCAACAAGCAGTCGTTCCCGTGCTCGCTGTGCGGCGCCTGCTTCATGGTGAACCAGGGCTGCAAGCGGCTTGCCAACACCGCTGCGTGCTACGAGAACGACATCAACTATCTCAACAACCTGCCCCTGGGCCGACGCAACCCGCCCAACCTGCTGGAGATACGACCGCTGCCGGCCAAGCATAAGACAGCTCTAGTGCTCGGCAAGAAGCGCGCGCCGCCGAGCGAGCCCGCGCGCCCCTTCATCTCCACGCCGGTGGCGCCACGGCCCACTCTGCCCGCCGTCACGCTGTCCCCCGTGACGAGGTCGCCGGGTCAGACTGTGGTCAACACCAAGCACCAGTTCGTCAGCCACATGATCAAGAGGGAGCCCAGCGAGGAGGCCGGCGCTTCCGTCACGTCGCACGACCCACAGAGCTTCAACGATCTCGTCATCAAgAACTTCTACTGCGAGATCTGCAACCAGTATTTCCCGCGGCGCAGCTCGTTGAAGCGCCACCAGCGCTCGCACCTGCTGGACAAGATGTACCCGTGTACTCGCTGCGACAAAATCTTCACGCGCAACGAGCACCTCTCGCGCCACCTCCTGCTGCACACGCAGgCTCGACCGTTCCAGTGTCAAGTCTGCATGAAGAAATACACTCGCAAGGAGCACGTGGACCGTCACATTCTCATCCATCCGCAGATCCCCGAAGCAGAGTTCCGCAGCCGCCGCCTGGAGCAGGCCGGCATGGAGATCTCCAGCGTGGCTCACACTCCAGACTCCCCCATGCAGACGCTCCAGCAGAAGATCCAGCAGATCTGTCACTCCAAGCACACTCCAGACTCCCCCATGCAGACGCTCCAGCAGAAGATCCAGCAGATCTGTCACTCCAAGGTAGGTGCACGGTGTAGGCAGCAGTTGAGAGATATTCTCCATACGAATGCCGGGAGAGAGTGGCATGGAGATCTCCAGCACACTCCAGACTCCCCCATGCAGACGCTCCAGCAGAAGATCCAGCATCTGTCACTCGTGGACATCGTGCCGCGCATGAGTCTGCTGCACTCGCACCGCTCCTACGTGTGCGAGCTGTGCGGCCACGGGTTTGCGCGCAAGGAGCACCTGCAGCGGCACAAGCGGAGGATGCACACGGTGATGACGGGCAAGCCGGGCGCCAGGGACGAGGCGAAGCCCTACAGCTGTCCCACGTGCGGCAAGACGTTCACGCGCAAGGAGCATCTGGTGCGACACAACAAGATCCACCTCCGAGAGTCTCTGCTCGGTCTGCTCTCACCGGGACAAGCGCTTGAGGAGCGTCGCGCGCCGCAGCCGCAACCGGAACCTCTCAACCTCTCCCCGGTGAAGTCCGAGCCGCAGGAGGCACAGAGCCTCCTGTCTCTGTCGGGCGCCGACGGACTGGACGTGTCGCTGTCGGTGGTGCCGGCCAACAGCTCCCGCGCCGACGTCGCGCCGCCGCCGCCGACCAACAAGCTGGACATCAGCATCAGTCTCGTGGACGACAGCCTCTCGCAGTCGGCCAGCTCGTCGGATAATCTCATCAGCTTTCTCAAGCCGTTCACGTGCACGTTCTGCGTGGACAAGCGATTCACGCGCAAGAGCCACCTGGTGCGGCACTTCAAGCGGATTCACCCCACCGAGGATCTGGCCTCACTCGGCATCACCGCCGAGACCTCTCGCTCGGAGAAGGTGAGCTTCAACGCGGACACGTTCGTCTCGAACGAGGAGGAGCACCTGTGCAAGCTGTGCAACAAGCACTTCAGCCGTCGCTACCACCTCAACCGACACCTCAAGCTGCACGTGGCGATGAAGACGGGCAAGATCCGCGAGAAGATCGACGAGGAGGACAAGCCGTTCCAGTGCTCCAGCTGCCGGGGGAGGTTCCACCAGTACGAGGGCTTCCAGAACCACCGCTGCACCGGCACCGAGGTTGGCAGCATGGTTCTGGTGGGTTCTGTGCAGCGCCGCAGCAGCGCCGACCAAGTGGCGACCCGGCGCCGGCGCAGTCGCAACGGACTGGAGTGCGAGCGCTGCGGCGACTCGTTCGCCACTCGCAAGCAACTCGCCAAACACAAGTTGACTCATCGACCAAACTAA
Protein Sequence
MPITSESSTEAQCRLCASSAKGDIIEIFGEDGKTRNLAKKIEECLPISVSRGDCFPKSICLICLEKLEQFNNFREDCIKSERSFEATWSNVHPDQNIEFSLEPECCLQEVEQEEPENNALLFQKPVVSPAKEQHQEQRSNGLFQPENIPLPKKSHRGLADFIITPIMAIPKVNKPLGSTHDSKLRLSLKPHASPRYNFPQIGVLNPDDYILMYEEHLPDSTSGLPEYRDGREEEEERRKNQVLPPMWDVYEKITDGGEAKFLHRRYIINKQSFPCSLCGACFMVNQGCKRLANTAACYENDINYLNNLPLGRRNPPNLLEIRPLPAKHKTALVLGKKRAPPSEPARPFISTPVAPRPTLPAVTLSPVTRSPGQTVVNTKHQFVSHMIKREPSEEAGASVTSHDPQSFNDLVIKNFYCEICNQYFPRRSSLKRHQRSHLLDKMYPCTRCDKIFTRNEHLSRHLLLHTQARPFQCQVCMKKYTRKEHVDRHILIHPQIPEAEFRSRRLEQAGMEISSVAHTPDSPMQTLQQKIQQICHSKHTPDSPMQTLQQKIQQICHSKVGARCRQQLRDILHTNAGREWHGDLQHTPDSPMQTLQQKIQHLSLVDIVPRMSLLHSHRSYVCELCGHGFARKEHLQRHKRRMHTVMTGKPGARDEAKPYSCPTCGKTFTRKEHLVRHNKIHLRESLLGLLSPGQALEERRAPQPQPEPLNLSPVKSEPQEAQSLLSLSGADGLDVSLSVVPANSSRADVAPPPPTNKLDISISLVDDSLSQSASSSDNLISFLKPFTCTFCVDKRFTRKSHLVRHFKRIHPTEDLASLGITAETSRSEKVSFNADTFVSNEEEHLCKLCNKHFSRRYHLNRHLKLHVAMKTGKIREKIDEEDKPFQCSSCRGRFHQYEGFQNHRCTGTEVGSMVLVGSVQRRSSADQVATRRRRSRNGLECERCGDSFATRKQLAKHKLTHRPN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-