Lnig024009.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- -
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010002316.1:89619-91376[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00065 0.046 15.3 3.5 1 23 194 216 194 216 0.98 2 14 0.00062 0.044 15.4 2.5 1 21 222 242 222 244 0.93 3 14 0.022 1.6 10.5 2.9 3 23 256 276 254 276 0.96 4 14 9.8e-05 0.007 17.9 1.5 3 23 284 304 282 304 0.97 5 14 0.00073 0.052 15.2 2.2 1 23 310 332 310 332 0.99 6 14 0.047 3.3 9.5 5.9 1 21 338 358 338 360 0.95 7 14 0.004 0.29 12.9 4.4 1 23 366 388 366 388 0.98 8 14 0.022 1.5 10.6 2.0 1 23 394 416 394 416 0.97 9 14 0.0021 0.15 13.7 2.5 2 23 423 444 422 444 0.97 10 14 0.004 0.29 12.9 0.2 1 23 450 472 450 472 0.97 11 14 0.00085 0.061 15.0 3.1 2 23 479 500 478 500 0.98 12 14 0.00041 0.029 16.0 0.2 1 23 506 528 506 528 0.97 13 14 0.02 1.4 10.7 3.6 2 23 535 556 534 556 0.96 14 14 0.19 13 7.6 5.8 1 23 562 584 562 585 0.95
Sequence Information
- Coding Sequence
- ATGGACGACGCAACTCAGCTGCAACCCATGAGTCACCGCCATCTTGTTGTTGTTAAATCAGAACCACAAGAATCTGAAGACACAGCGAACATAATCGACCAACATGAAGTTAATACAGAAACATCCGACCAGCCTTTAGAAGACTGCTTAATTCAACCTAAAATAGAGATCAGTGTCGATAGAGAACTCTTCCATTTACAAACTGAATCCGAGTGTTATAGTCATTATATTGATCATCAAAATGCGACTTATAAATCCTTAGAAGGAGGTGTAACTAAAGATTCTGAAACTATCAAAGTAGAGCAAAGCGTTGCTACATCATCCATACAACCAATTGAAGACTTCGCGAGTGAAAAAGAGTTACATACCATCGGTGATACAGGCTTCTTCCACATTCAAATCAAATCTGAAGATCACAGTGAAAAACCCATCGAGGATAACGATCAAAGTCAAAACACAGATCTCTCAAACCACAGCCTTGTAACTCACAGTGACTATTGTTGTGAACTCTGCAGTTACCGGAGTAACTCCGTTCGCAATCTAGCCTGTCACAAACAATCCCATTCTGCAGAGGAGAAACATCAATGCAACCAATGTGACTATTTGTCAAGAAACAAAAATGCACTTCAGAGGCATTTGAAGACACATTTGAGCGAGCGTCCATTTGCTTGCAACATCTGCACGAAAACCTTTTCGACGCGAAGTGCGCTGGGCGAACACAAGCGATGCCATTCGAAGGTGGAGAATATTAAACAGAAACATCTATGTAGTCAGTGTGACTATAGTGCACGGAAGAAGCAGCAATATGATGAACATATGAGAACACATTCTGGCGAGAAGCCACTTGCTTGTAGCATTTGTACGCAGACCTATAGTTCGAGACGTGCACTGTGCGTACATATGCAGACACATGGAACAGAGAAGCGGTTCCAATGTGGCAAATGTGACTTCAGATCTCACCAGAAGGGCGGACTTACAGTCCACATGCGCAGTCATTCTGGAGAGCGGCTATACACGTGTGACATTTGCGCGCACAAGTGTTCTTCCAACAGTCAACTGTCCAATCACATGCTTTGTCATTCGACGGAGAAGCGATTTGtgtgcagccaatgtgactataAATCCCACAGGAAGAATGACTTCAGCAGACATATGAAAGTTCATTTGGGAGAGAAGCCCTTCGCATGTACAGAGTGCTCATATGCATGTTCAACCAGTAATGCAATGAATTCTCACAAGTTACGCCATTTAACCACTAAAAGACTAGAATGCGGCCAATGTGATTATCGAACCAACTTCAAGAGCCATCTTAGACTACATCTGAGCACACATTCTGCTGACCGGCCGTATGCATGTGATATTTGCACATACAAGGCTACAACACGAGGTGCTTTGGCTAAACACACGAAACTCCATACAACTGAGAAGCAAAACAAATGCAACCAATGTGACTATGAATCTCATACGAAGCGAGACCTCGCCAACCATATGAGAACACATTCGGGCGATCGGCCATTTGCTTGCGACATTTGTGACTACGCATCTACATCCAACGGCGCATTGGCTCATCACAAGCGCATCCATTCGAAAGAGCGGAGGCTTCATTGCAGTGAATGTGATTATAGAACCAACTTTAAGAATCACCTTATACAACATGTGATTACGCATTCTGGAGAACGGCCATTTGCTTGTGACCTTTGCTCGTTTTCGTGTGGTTCTCGCAGTCAGTTGTACAGTCACAAGAAAAGACACCACTAG
- Protein Sequence
- MDDATQLQPMSHRHLVVVKSEPQESEDTANIIDQHEVNTETSDQPLEDCLIQPKIEISVDRELFHLQTESECYSHYIDHQNATYKSLEGGVTKDSETIKVEQSVATSSIQPIEDFASEKELHTIGDTGFFHIQIKSEDHSEKPIEDNDQSQNTDLSNHSLVTHSDYCCELCSYRSNSVRNLACHKQSHSAEEKHQCNQCDYLSRNKNALQRHLKTHLSERPFACNICTKTFSTRSALGEHKRCHSKVENIKQKHLCSQCDYSARKKQQYDEHMRTHSGEKPLACSICTQTYSSRRALCVHMQTHGTEKRFQCGKCDFRSHQKGGLTVHMRSHSGERLYTCDICAHKCSSNSQLSNHMLCHSTEKRFVCSQCDYKSHRKNDFSRHMKVHLGEKPFACTECSYACSTSNAMNSHKLRHLTTKRLECGQCDYRTNFKSHLRLHLSTHSADRPYACDICTYKATTRGALAKHTKLHTTEKQNKCNQCDYESHTKRDLANHMRTHSGDRPFACDICDYASTSNGALAHHKRIHSKERRLHCSECDYRTNFKNHLIQHVITHSGERPFACDLCSFSCGSRSQLYSHKKRHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -