Lnig021876.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- -
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010002049.1:46991-57163[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.04 2.8 9.7 4.5 1 20 409 428 409 430 0.94 2 12 0.00052 0.037 15.7 5.4 1 23 436 458 436 458 0.98 3 12 4.3e-06 0.0003 22.2 0.5 1 23 462 484 462 484 0.97 4 12 2.8e-05 0.002 19.6 2.3 2 23 490 511 490 512 0.95 5 12 0.74 53 5.7 2.9 1 14 519 532 519 541 0.77 6 12 0.00012 0.0088 17.6 0.2 1 23 545 567 545 567 0.98 7 12 0.00084 0.06 15.0 0.8 1 23 573 595 573 595 0.97 8 12 0.036 2.6 9.9 0.9 1 23 600 623 600 623 0.94 9 12 0.00019 0.013 17.1 0.9 1 23 632 654 632 654 0.98 10 12 0.9 64 5.5 0.6 2 23 658 680 658 680 0.93 11 12 0.26 19 7.2 1.7 1 23 686 708 686 708 0.96 12 12 0.014 0.97 11.2 0.8 2 23 713 734 712 734 0.96
Sequence Information
- Coding Sequence
- ATGGAGCCATTAGTTTCTCACGGTGCCGAGGAAAGCATCTTTTGGGTGTCGGACAACCATGAAATCGCCCAGGACCCGCTCGCTGCAGACGTCAAACCGAAAGTCGAGCCCTCGGTGAAACTGGAGTCTGGATCGACGCCGACATCTGATGAACCAGGCAGAGACATGGCATCGCGTTCTGAGGAGTGGATTGACACGGCATCGAAACCAGTGAAAGATGAACCAGTTTCACCTTGCAAACCTTCTTTATGCTTCCTTTCGACCCTCGTTTCTGATTCAAACTGCGATGCAGAGTCATCTGAAAGTGCTTGCGTGTCGCCAACCCATGATCCTCTAGAGCTGAAACCTTGTATTGTTTCACAAGATAGCCACGAGTCTAATCCAGTAGTTGTCAAAACCGAATTGAATTCTGCAGAAATGTCACAAAATAAGTATGTTTTGCAATCCAACTTCAACTCGTACTCAAGTACGACTAATATTAATAATCACGACGACCTGGACCAACGATCTGCTGGCGTTGTCCGGTATGAGCTCAAGAAGTGTTATGTGTCTCTCTCCAGGTGTCGACTGTCTGATCACAAGGTCCCTGCTCGAACCTCTTCGGACTCTGCAGATGGTAATTCATCTCCGTCCAATTCTCATGAACTTGGGGTCTCTCAGGAACCTCCCATTCAAACAAAGATACAATCCTCTTCCAAGAAACAAAAACTCAAGGTCTTATCTCCATTTGTTGACTCGAAGATATTTCTAGACCCTGATTACGTTAAAGCCAAGAAACGAAAAATTAAGATATTGTTTCCATCGGTTGACTCCCAGAAAACTCTTGAACCTGATCACGTTAAAAGCAAGAAACACACCAGTTCTAAGAATCTCAAACAAAAGGTCTCGTCTCCATTGGTTCACTCCCAGAAAACTCTTGAACCTGATCACGTTAAAACCAAGAAACACACCAGTTCTAAGAATCTCAAACAAAAGGTCTCGTCTCCATCCCAGAAAACTCTGGAACCTCATCACGTTAAAAGCAAGAAACACACCAGTTCTAAGAATCTCAAACAACAGGTCTCGTCTCCATTGGTTCACTCCCAGAAAACTCTTGAACCTGATCACGTTAAAACCAAAAAACAATCGAAACCCAAACTCAAGGTCTCCTCTTCTTTTGATGGCTCTCAGAAATCTGGTGCACCTGATCACGTTCAAACCGAAAAACTATCGGATCCCCGTGAATTTAAATGCGACAACTGCGATAAGTCTTACAAGTGCAAAGGGCATTTAGTCAAACACAAACTTTCTGCCTGTTTACCACCGTATGTCTGTCTTAAGTGTAACAAATCTTTCAGTCAAAAGATCTTCCTCAGCCATCACAAAAAGACACATCGGGAGGAATATAAATGTGATGTGTGCAGTAAAGTGTTCTCAACTAAAAGTTATTTGATAGACCATGAATCTGTTCACTCCTCAACTCCAGCCTCCTGTCCAACATGTGAGAGAGTATTCAGCAGAGAGAAAGCTCTACGAACACATTTGAAAACACACCACAAGATCGTGACACGGAATTTCTCATGTGGCACGTGCGGAAAGACGTTCTTCACACGAGCAATTTGTAGGAATCACGAAAAGATACACGTGAAGCCATTTAAATGTGTTCAATGCGTAAAAGCATTCTCCACCAAGCAGCTACTAGCAGCCCATCTTATAATGCATTCCGGAAGAAAAGACCACATCTGCGACATCTGTGGCAATTCTTTCGCTATTGCCCGATGCCTCAAGGCGCATCTGCGCATCCACATGGATAATACATTCACATGTGCCGACTGTAATCAGATGTTCAAAGCCAAGCATATTTTACAAGCTCACATCGTAAGCAAACATATTCCCCGCGAGCAACGGAAGAGCTTTCCCTGTCCAGTTTGTAAGATGTCGTTGATCAGTTCTTGTAATTTAGCTAAGCATCTCAAAACACATGACACAAGGAAGTGTCCAAGCTGTGAGTTTGTATGCGCCACATATTTCGAAATGAAAGCTCACACGATACTCGCTCACGGCGGTGAAAGAAAACATAAATGCAGAGTCTGTGGGTTCTCATATGTCACGATAGCAGAGCGGGACCGCCACGAGAAGAAGCATGTATCCCAATTGAACTGTCCTTTCTGTCCTAAAAGTTACTCGATTCCAGCTAGCTACTACACTCACCTCCATAAACATAAAGTTGACGACAGGCTAGCTGCTGACAAAGTGGAAAAAGCGCGACAAGAACTGAGTGTTGGTGAAGAAAATGCGACAGTAGAAAAACAACGACGAAGGAATTATAATGACGCTTCCACTCTTGTCACATCTAAAGCAGATGTTTGGGGCAAGATCGTTCACCATGATAGAGAAGAGAAGGGGCCCCAAGATGGAGCCCTGGGGCACACCTTTGGTGACGGGTTCCCAAGAGGAGAAGTGTTCATTAAGCTGCACTCTCTGAGTCCTACCACTCAGGTAGGAATCGAACCATGCCCCACAAACACCAGTAATCCCATATACCGTGAGTTTGTTCATCAGCAGTTGGTGGTCCATTGA
- Protein Sequence
- MEPLVSHGAEESIFWVSDNHEIAQDPLAADVKPKVEPSVKLESGSTPTSDEPGRDMASRSEEWIDTASKPVKDEPVSPCKPSLCFLSTLVSDSNCDAESSESACVSPTHDPLELKPCIVSQDSHESNPVVVKTELNSAEMSQNKYVLQSNFNSYSSTTNINNHDDLDQRSAGVVRYELKKCYVSLSRCRLSDHKVPARTSSDSADGNSSPSNSHELGVSQEPPIQTKIQSSSKKQKLKVLSPFVDSKIFLDPDYVKAKKRKIKILFPSVDSQKTLEPDHVKSKKHTSSKNLKQKVSSPLVHSQKTLEPDHVKTKKHTSSKNLKQKVSSPSQKTLEPHHVKSKKHTSSKNLKQQVSSPLVHSQKTLEPDHVKTKKQSKPKLKVSSSFDGSQKSGAPDHVQTEKLSDPREFKCDNCDKSYKCKGHLVKHKLSACLPPYVCLKCNKSFSQKIFLSHHKKTHREEYKCDVCSKVFSTKSYLIDHESVHSSTPASCPTCERVFSREKALRTHLKTHHKIVTRNFSCGTCGKTFFTRAICRNHEKIHVKPFKCVQCVKAFSTKQLLAAHLIMHSGRKDHICDICGNSFAIARCLKAHLRIHMDNTFTCADCNQMFKAKHILQAHIVSKHIPREQRKSFPCPVCKMSLISSCNLAKHLKTHDTRKCPSCEFVCATYFEMKAHTILAHGGERKHKCRVCGFSYVTIAERDRHEKKHVSQLNCPFCPKSYSIPASYYTHLHKHKVDDRLAADKVEKARQELSVGEENATVEKQRRRNYNDASTLVTSKADVWGKIVHHDREEKGPQDGALGHTFGDGFPRGEVFIKLHSLSPTTQVGIEPCPTNTSNPIYREFVHQQLVVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -