Lnig035200.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- -
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010004493.1:9792-13514[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0099 0.71 11.6 3.8 1 23 286 308 286 308 0.99 2 13 5.8 4.1e+02 2.9 0.8 12 23 330 342 327 342 0.86 3 13 0.0035 0.25 13.0 1.6 1 23 348 371 348 371 0.97 4 13 0.013 0.94 11.2 0.6 1 23 377 400 377 400 0.96 5 13 0.19 14 7.6 0.1 5 23 402 421 401 421 0.92 6 13 0.083 5.9 8.7 1.3 2 23 440 462 439 462 0.96 7 13 0.013 0.91 11.3 0.5 2 23 483 505 482 505 0.96 8 13 9.4e-05 0.0067 18.0 2.5 2 20 512 530 511 532 0.93 9 13 0.00017 0.012 17.1 0.4 1 23 538 560 538 560 0.96 10 13 1.8 1.3e+02 4.5 4.7 2 23 567 588 565 588 0.90 11 13 1.4e-05 0.001 20.6 1.5 1 23 596 618 596 618 0.98 12 13 2.4e-05 0.0017 19.9 2.8 2 23 625 646 624 646 0.97 13 13 0.00075 0.053 15.2 1.1 1 22 652 673 652 673 0.96
Sequence Information
- Coding Sequence
- ATGGATCCCAGCTTTTCATACGAGGAAGAGAACTGTCTGTACGACGTTGCCCGCATCACCGATCCGTTAGAGATCAAGGAGGAACGGAAGCCAGATCTCCCACTGCTGAAACTCGAGCTGTTCTCGACATCGAATCAGACTCGGCTGTTCGGGGAGGATGTCGCCTTATCGCCGCCGGCTGTTGAATACGTCGCCTCGCTTCATTCCTTCGACCTCGTGACAAAGCAAAAACATGGAGCTTCAATGAGCGACGGGAACTACAAGATGGAGATCATCGAGCACTCGGTGGACGAGAAGCCTCCGTTGTGTGCCACTTCAACTCCTGTCGGACATCTTGGCTTGAGTGAAGCGAGTGAAAACATAGCCAATGAGATGTCGTCGTTCTGTGACACTTCGATGCCCATGTTACTACCTTGCGGAATGAGTGAAGCGAGTCAAAACGTAGCCAGCGATGAGTCCTTGTGGTGCTTCGCTTCGAGCCCCATGTTCCTGCTCAGCGGTATTTGTGAGCCAGGCGAAATCATGACCAATGAGCAGCCTTTGTGGTGTCTCACTTCGACCCCTATGTACATGTTTAGTGAGACGAGTGAACAAAGTCAAAATATGGCCAATGAGATTGAGAAGCCTCTGAGAATCACTTCAACTCCTGTACCACTTTCTAAACCTTCTGATTTCTCTGAGCCTAAACCAAGTCAAAACGTAGCCCATGAGAAGCCCCCATATGCCACTGTGTCACTACCTGAATTAAGTCAAAACATAGCCAAAGACTTTCCTTCCGTTGTTACTCATGATTTTGTTCTTCCCGTAAACGTTCCTGCTGCTCTGTCGAACGTACCTCTTCAAGTTATGCGTAAATTCAGGTGTAAAAAGTGTCTGATGAGCTTTGAACTGAAGCAAGATTATCAGAATCATCGTAAAACGCACAAACCGGTGAAGCGATTTGCGTGCTGGGTCTGCGCAGGTACGGGACAGAAGCCTGTTCGAAGGCGGGAGAGTGTTTTGACGCGCCACATGAAACGGAGACACGACGGGGAAAAGCCATTCCGTTGCGAGACTTGTGGACAGTGCCTGAGCGCGTACAAGTCGTTGACCAATCATATCAACAATATACATTACAATGAGACTCGCTTCAACTGCTGGATTTGCAAACGACCTAGTAATAATGAATTAGCTTTGTTCAGACATATGAAACAATATCACGATGATTGTACGACGGAGTTCAAATTCTATGTCGATTTACAACGACATGTTATGGAGGAGCATTCCGAATCTGTTTCTGTCAAATCGGAAAAGAGTTTCGAGAGAGAGAAGTGTCTGAAGTGTCCAGGATGTCAGATGGAGTTCAAATTTGATCTTGATCGTCGCCGTCACATCAAGAAGAAACACTTTAATTCCTTTGATTTGAAGTACGCCGTCGAAAGTAGTTTCCAGGAAGAGAAGTGCGTTAAATGTGTAGAGTGCCAAATGGAGTTCAGATTCGATCTGGATCTCCAACGCCACATCAAGAGTACACACGCCACCGACACATCGGTTCAGTGCGAGACCTGCGGCAAATGCTTCCGTCGCAAGGACTCCCTGCTCGCTCATTCCTGCGTCTCGGCTCCGGTCCGTTACGACTGCTCACTGTGCGACAAGAGCTACGCCAAGAAGCGTACCCTCTCCTGGCACATGGCCGACCACCGCGGTCTGCGTCCGTGCCCCTGTGCGGTGTGCGGCAAGCGGTTCCTCTGCAAGTGGACTCTGCGGCATCACGCCAAGACGCACTCCGCCGCGCCCGCAGCAGCGTTCAAGTGTCTCATCTGCGAGAGGAGTTTCAGGCAGAAGAAAGCTCTGAAGTACCACATTCAGTGGCACACGGGAGCTAAGCCGTTGCAATGTCACATCTGTCAGGAGAGGTTTACGAATAGAACAAATCTCAATTTACACCTGAAGCTGCACTTGGGAGTCCGGCCGTTTAAGTGTGATGCGTGCGACAAATGCTATGTTAACAAACCCAGGCTGGCGAGACATATTAGGAAAAGTTGTGGAAGAAGTGTGTAG
- Protein Sequence
- MDPSFSYEEENCLYDVARITDPLEIKEERKPDLPLLKLELFSTSNQTRLFGEDVALSPPAVEYVASLHSFDLVTKQKHGASMSDGNYKMEIIEHSVDEKPPLCATSTPVGHLGLSEASENIANEMSSFCDTSMPMLLPCGMSEASQNVASDESLWCFASSPMFLLSGICEPGEIMTNEQPLWCLTSTPMYMFSETSEQSQNMANEIEKPLRITSTPVPLSKPSDFSEPKPSQNVAHEKPPYATVSLPELSQNIAKDFPSVVTHDFVLPVNVPAALSNVPLQVMRKFRCKKCLMSFELKQDYQNHRKTHKPVKRFACWVCAGTGQKPVRRRESVLTRHMKRRHDGEKPFRCETCGQCLSAYKSLTNHINNIHYNETRFNCWICKRPSNNELALFRHMKQYHDDCTTEFKFYVDLQRHVMEEHSESVSVKSEKSFEREKCLKCPGCQMEFKFDLDRRRHIKKKHFNSFDLKYAVESSFQEEKCVKCVECQMEFRFDLDLQRHIKSTHATDTSVQCETCGKCFRRKDSLLAHSCVSAPVRYDCSLCDKSYAKKRTLSWHMADHRGLRPCPCAVCGKRFLCKWTLRHHAKTHSAAPAAAFKCLICERSFRQKKALKYHIQWHTGAKPLQCHICQERFTNRTNLNLHLKLHLGVRPFKCDACDKCYVNKPRLARHIRKSCGRSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -