Lnig033796.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- lola
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010004117.1:5299-19719[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0029 0.21 13.3 5.5 1 21 39 59 39 60 0.95 2 13 0.00038 0.027 16.1 2.9 1 21 100 120 100 121 0.92 3 13 0.031 2.2 10.1 1.0 1 19 140 158 140 160 0.95 4 13 0.00028 0.02 16.5 4.0 1 21 204 224 204 225 0.93 5 13 2.4 1.7e+02 4.1 0.3 1 9 233 241 233 243 0.87 6 13 7.3e-05 0.0052 18.3 1.4 1 21 280 300 280 301 0.96 7 13 0.0072 0.51 12.1 2.2 3 21 311 329 309 330 0.94 8 13 0.0075 0.53 12.0 4.9 1 21 337 357 337 358 0.95 9 13 5.1 3.6e+02 3.1 6.7 1 23 366 388 366 388 0.95 10 13 0.00047 0.033 15.8 1.1 1 21 415 435 415 436 0.95 11 13 0.0015 0.11 14.2 1.2 1 23 444 467 444 467 0.92 12 13 1.3e-05 0.00091 20.7 0.6 1 22 486 507 486 507 0.96 13 13 0.0015 0.11 14.2 4.4 1 23 515 538 515 538 0.97
Sequence Information
- Coding Sequence
- ATGATCACGAATTTTTGTTTCGTTCCAGCTGGTAATTCTCGCCGCTCTCGTTTCTCCGACTACTTGGACACACTAACTGCTCCGTCGTCAACGACTAACCCCGTAACTGCTGTGCATACTTGTCGCAAATGCAAGAAGAACTACAAGTACAAGTACCATCTGACTGCTCACGTGAGATACGAGTGTGGCAAGGAGCCGGGATTTCAGTGTCTTCTGTTGTACAATCTGCAATGCGATGGCCTCGAGAATATAAACGCCAATGCCAACCGATCTCTGGACCAATATGTTTATAAACCTCACATCTGTGGACAGTGTGGCAAAAGTTATAAGAACAAGTTCCATTTGACATCTCACGAGAAGTACGAGTGTGGTTTCCTCACGTTCAACCGAGTTCGCATCGGGTCCTCAGCAAGACCGTACTTGTGCCTCAAGTGCGGCAAGGACTACAAACTCAAGCAACATTTGACCGCGCATGACAGATACGAGTGCGGTAAAGATGCGCGCTTCCAGTGTCCTCATTGTCTTCCCTCTTCAAACCATCTTCTCAGCGAGTTGTTCTTCGACGGCAATCACTTCATCCGACCCTTGAACACGACCCCTGGCAAACTACATGCTTGCGTGAAGTGTGGCAAGAGTTACAAAACCAAGCATCACTTGACATCGCACGAGAGATACGAGTGCGGCAAAGAGCCACAGTTCCAGTGCCCACATTGTCCCTATAGGCTGATAGCTGACAAAATCGAACGTTTCATCCCTCTCGTTGACCTTGATTTGAATGTTACAGGTGGCGCCGCCGAGCGGCTGTTGCAGCGCCTGGAACAGCAGCCATTAGGCGGCTACTCTTGCCCGATGTGCCAGAAGAGTTACAAGTACAACCAGACTCTGATGCGACATCTCAAGTACGAGTGCGGGATTGATCCGCAGTTAGCGTGTCCGTATTGTGCACACAAGTCGAAACATAACTCGGATCTACAGCGCCATATCAAGCACAGCTCGCTGGCTAAGGAATTCATCTGCTTCACCTGCGGACGGGAATATAAACACAACAAACATCTGACGTATCACATCAAGCACGAGTGCGGGATTGATCCCAAGTTCACGTGTCCCTGCTGCTCCTTCAAGTCCAAGAGGAACTCGCAGTTGAAGATGCACTTCTTTAGACACTTCCAGTACTGGGCTGAACCAGTACAACGACCAGAAGCAAACAATGTCACTCATCATAATGCGAGTGGTGCAAAACGATTCCAGTGTCAGAAATGTGAAAAGAGCTACAGCCAGAACGCTGGACTTTACAACCACACGAAGTACGAATGCGGAAAGCAACCACAGTTTCAGTGTCCGCAGTGTCCTTACAAATCCAAGAGAAAGACCAGTCTCTCTGCACATGTCTACTTAAAACATACCTCCCACAACACCGACCTCTGGTCTTCACGAAAACACAGAGACATCGGTCACTTCGAGTGTCCGAATTGCCAGAAAACTTACCGTTACAAGCGCAACATGATGGCCCACATGCGAGTGGAGTGTGGGAAGGAGCCACAGTTCCAATGTCCCTATTGTGTCTACAGAGCAACCAAAAACAATCACCTGAATAGACACATGAAGCATGCGCATTTGAACGAAGATGCGGCAAGCAACTGA
- Protein Sequence
- MITNFCFVPAGNSRRSRFSDYLDTLTAPSSTTNPVTAVHTCRKCKKNYKYKYHLTAHVRYECGKEPGFQCLLLYNLQCDGLENINANANRSLDQYVYKPHICGQCGKSYKNKFHLTSHEKYECGFLTFNRVRIGSSARPYLCLKCGKDYKLKQHLTAHDRYECGKDARFQCPHCLPSSNHLLSELFFDGNHFIRPLNTTPGKLHACVKCGKSYKTKHHLTSHERYECGKEPQFQCPHCPYRLIADKIERFIPLVDLDLNVTGGAAERLLQRLEQQPLGGYSCPMCQKSYKYNQTLMRHLKYECGIDPQLACPYCAHKSKHNSDLQRHIKHSSLAKEFICFTCGREYKHNKHLTYHIKHECGIDPKFTCPCCSFKSKRNSQLKMHFFRHFQYWAEPVQRPEANNVTHHNASGAKRFQCQKCEKSYSQNAGLYNHTKYECGKQPQFQCPQCPYKSKRKTSLSAHVYLKHTSHNTDLWSSRKHRDIGHFECPNCQKTYRYKRNMMAHMRVECGKEPQFQCPYCVYRATKNNHLNRHMKHAHLNEDAASN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -