Lnig030839.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- -
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010003447.1:21168-43467[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 5.8 4.1e+02 2.9 0.3 2 23 251 273 250 273 0.87 2 10 0.074 5.3 8.9 2.3 1 23 279 301 279 301 0.96 3 10 5.3e-05 0.0038 18.8 2.9 1 23 307 329 307 329 0.96 4 10 0.0035 0.25 13.1 4.3 1 20 335 354 335 357 0.92 5 10 2.2e-05 0.0016 20.0 1.7 1 23 366 388 366 388 0.98 6 10 9.2e-05 0.0066 18.0 0.1 1 23 394 416 394 416 0.98 7 10 0.00057 0.041 15.5 0.3 1 23 422 444 422 444 0.92 8 10 4.9e-05 0.0035 18.9 0.8 1 23 450 472 450 472 0.98 9 10 0.001 0.071 14.8 1.7 1 23 478 500 478 500 0.98 10 10 7.3e-06 0.00052 21.5 1.9 1 23 506 529 506 529 0.98
Sequence Information
- Coding Sequence
- ATGGGGGGTGATATTTTGTGCCGGCTCTGTGCGCACCAGGGTGACAGTTTTGTGCGAATATACGAGGCCGAAGGACAGAATCTCAACTTGGCAACCAAGATCATCCAATGTCTACAGATTTGGCTGTACCCCGAAGACCCGCTTCCTAAAGCCGTGTGCATCGACTGCTGTGCCAAACTGAACCAGTACTTCGACTTCTTCGAGACGTCGTCGCGCGCGCAGCTCTCCCTGCAGGCGCTGTTCGATCCCAAGGTCGTGCGCAAGGAGATGAAGAAGGAGGCGGAAGCGGCGGCCGCTGCGGCAGCGGTCCAGGAGGGGCCGCtcaaggaggaggaggaggacgaGGAGGACGATCTGCCCGACCTACCGGTCCTCGATAACGAGGACCCTGACGGGGATGAGTCGAGTAACGACGAGGAAGTCGGCGGGGACAACGAGGCTCCGGAATACACCGTCGAGTGCGTTCTCTCAGACAAGGATGCCAACCTCATCGCTCAGACAGAGGCGAGCACGTCCCGTCGCAAGTGCCGCGTGCCGATCAAGCGGGGCTCCGCACGCGCGCCGCTGAAGAAGCAGACGGTGGAGCGGACGCCCACCAAGCGGATCGCCAAGATGCGCGCGGAGCAGAAGGTGAAGGAggtgaaggagaaggagaaggaggagCGGAAGAAGCCGGGAAGGAAGAAGCGAGACGTGAAGCCGATGGTGGTCAAGGGAAAGCCCAAGGCCGTCCTCGAGGGGTATCCCTGGGTGTGCACGGACTGCGACGACACTCTACTGACCTTGCCGGCGCTGCGCCAGCACCACCAGACGGTGCACAACCAGGTGCCCAACTTCAAGTGCATCCAGTGCGCCAAGACGTACACGAGGTACCGCAGCTTCGCGCGCCACGTCAAGCTGCACCGCAACCCCAAGAAGTTCAGATGCGAGGAGTGCGGCAAGTGTTTCTCCCAGAAGACGGTGCTGCAATCTCACAGCACGGTGCACACCGACGCGCGCCCCCACGTGTGTCCGCAGTGCGGCAAGGCGTTCAAGCAGTTCAGCTCGCTCTATCTGCACAGCAAGTGTCATCTGCCCGACCAGGTCAAGCCCAAGTTCCCCTGCGACGTATGCAACAAGGACTTCGCCACGAAACACACGCTGGAGACCCACCGCAAGATCCACACGGGCGAGCGCAACTTCATCTGCGACGTCTGTGGCAAGAGCTTCATCGCCAAGGGCAGTCTCGACTACCACATCCTCACACACTCGGGCGACAAGCCTCACGCCTGTCCCGTCTGTGACAAGGGGTTCAAGACTGCGCGGCTGCTGGGCAAGCACGCGACGCTGCACACCGGCATCAAGCCGCACCAGTGCGACGTGTGCGGCAAGCAGTTCCGCGAGCGCGGCGCGCTGAGAGAACACAACCGCATCCACACCGGCGCCATGCCGTACAGCTGCGAGTTCTGCGGCAAGAACTTCCGCTTCAAGGGCATCCTCACGGTGCATCGAAGGCAGCACACCGGGGAGCGTCCGTACAGCTGTCTCGACTGCCGGAGAGAGTTCACCAACTGGGCCAACTACAACAAGCACATGAAGAGACGACATCGCAGCGACGACCCCACGCGCGGCTACCGGCCCAATCCAGTGAGTAGCAAGCGGCATTGGAGTTGCTTCATAAGTCAACATTTTCACATCAGTGCGAAAAGACAGTTGGTAACACACACTGGCGGCACGCCGGCACACGGCTCGATACCGCCCAAGATCATCGGGCCCAACGCCCCCGCCGTGTCGGTCGCCCCGGTTATCATCTCGGTGTCCAACAGCGTCATGTACCAACAcgacaacagcaacagcagctCCGTCTGCAGCATGCCCGTCGTCAACGTCTACCAACAGCACAGCGCGCAGGTGGTCGTCAATCAGGTGCCGAAGATGGCGACATCCGTGAACGTCTACCCCGCCAAGATGTCCGCCAACAGTTTCCACGGCAACGCGAGCGCGCGCGCCGTGTTCCAGCAGAGCGACGGCGGCGTGCAGGAGGAGCGCGCGGTGATGGGCAGCTACCACGTGCCCTCGTACGTGCCCACCGGCCTGCCGATGGGCAGCATGGGCTACTACATCCCGCCCATCCACCACGCAGACCCCAACCTCGAGATGCTTCAGCACCGGATGGCCAACAACCAGTAG
- Protein Sequence
- MGGDILCRLCAHQGDSFVRIYEAEGQNLNLATKIIQCLQIWLYPEDPLPKAVCIDCCAKLNQYFDFFETSSRAQLSLQALFDPKVVRKEMKKEAEAAAAAAAVQEGPLKEEEEDEEDDLPDLPVLDNEDPDGDESSNDEEVGGDNEAPEYTVECVLSDKDANLIAQTEASTSRRKCRVPIKRGSARAPLKKQTVERTPTKRIAKMRAEQKVKEVKEKEKEERKKPGRKKRDVKPMVVKGKPKAVLEGYPWVCTDCDDTLLTLPALRQHHQTVHNQVPNFKCIQCAKTYTRYRSFARHVKLHRNPKKFRCEECGKCFSQKTVLQSHSTVHTDARPHVCPQCGKAFKQFSSLYLHSKCHLPDQVKPKFPCDVCNKDFATKHTLETHRKIHTGERNFICDVCGKSFIAKGSLDYHILTHSGDKPHACPVCDKGFKTARLLGKHATLHTGIKPHQCDVCGKQFRERGALREHNRIHTGAMPYSCEFCGKNFRFKGILTVHRRQHTGERPYSCLDCRREFTNWANYNKHMKRRHRSDDPTRGYRPNPVSSKRHWSCFISQHFHISAKRQLVTHTGGTPAHGSIPPKIIGPNAPAVSVAPVIISVSNSVMYQHDNSNSSSVCSMPVVNVYQQHSAQVVVNQVPKMATSVNVYPAKMSANSFHGNASARAVFQQSDGGVQEERAVMGSYHVPSYVPTGLPMGSMGYYIPPIHHADPNLEMLQHRMANNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -