Lnig000498.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leuctra nigra
Gene Symbol
-
Assembly
GCA_934046545.1
Location
CAKOHC010000034.1:13287-29341[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.0009 0.064 14.9 1.5 1 23 103 125 103 125 0.98
2 21 0.8 57 5.6 0.8 1 23 159 182 159 182 0.94
3 21 0.0016 0.12 14.1 0.7 1 23 188 210 188 210 0.97
4 21 0.0014 0.099 14.3 0.8 1 23 216 238 216 238 0.98
5 21 0.00063 0.045 15.4 1.4 1 23 244 266 244 266 0.97
6 21 0.0014 0.1 14.3 3.5 1 23 272 294 272 294 0.99
7 21 0.0016 0.12 14.1 3.3 1 23 300 322 300 322 0.98
8 21 0.44 31 6.4 2.5 2 23 328 350 327 350 0.96
9 21 0.035 2.5 9.9 0.3 1 23 356 378 356 378 0.97
10 21 0.0017 0.12 14.0 0.9 1 23 384 406 384 406 0.98
11 21 0.078 5.6 8.8 2.5 1 20 412 431 412 434 0.94
12 21 0.51 36 6.2 2.5 1 23 490 512 490 512 0.97
13 21 1.1 76 5.2 5.7 1 23 518 540 518 540 0.99
14 21 0.11 7.8 8.3 0.3 1 23 546 568 546 568 0.97
15 21 0.31 22 6.9 0.3 1 23 589 611 589 611 0.98
16 21 0.011 0.81 11.4 0.3 1 23 617 640 617 640 0.95
17 21 0.56 40 6.1 5.1 1 23 646 668 646 668 0.99
18 21 0.036 2.6 9.9 0.1 1 23 674 696 674 696 0.96
19 21 0.0036 0.26 13.0 1.3 3 23 704 724 702 724 0.98
20 21 0.01 0.73 11.6 1.5 1 23 730 752 730 752 0.98
21 21 2e-05 0.0014 20.1 2.8 1 23 758 780 758 780 0.99

Sequence Information

Coding Sequence
ATGTCGAGCCAACTCTTCGATACGGAGAATATAGCTGTCAAGACAGAGCCGGATGATGGCGAAGATTCTAGGAACATTGACATGGAAGACAATATTAGTACAGCTACATTCATTCAGCCAGTTGAAGAATATTTAGATCAAAAGCCAAACATCCAAGCAGACACGAACTTTCTTCATGTTGATTTAACATCTGAAGAACCAGCAGAATTATCTTGCAACggtgaagaagaggaagaagatccCCTAAAAGAACAACCCCAAGACGACGAATTGCAAGATAATCTACTCGTTAAGAGCAGTATATTGTACTATTGTGATGTGTGCAGTTATAAGTTTAGCTCCATCCGCAACCTTGAATACCACAAGAGAGGTCATTCAAGTGAGCAGCCATATGCATGTGACATCTGCGAGTACAGATGTCATCTGCATAGCTGTCTGGTCACACACAAGCTACTCCATTCAAATGAGAAGAGTTTCCAATGCCAAGTGTGCGAATACAGATCAAATTATAAAATCGATCTCGGAGATCATAATATGCGCAAGCATTCCGGAGAGCGGCCATATGCGTGCGACATCTGCGAGTACAGATATAAAGAGCGTAGCTCTCTGGTCACACACAAGCTACGCCATTCAAATGAGAAGAGTTTCCAGTGCAATGTGTGCGAGTACAAATCAAACATTAAGAGCAGTCTTGTACGTCACATGCTCAACCATTCTAGTGAGCAGCCATATGCATGCGACATTTGCGAGTACATATGTAATCGACGTAGTGATCTGGTCAGACACAAACTACGCCATTCAAATGAGCAGAAGTTCCAGTGTAACAAATGCGAGTACCGATCAAAGTTCAAGGCCAGACTTGTGCGTCACATGCGCAAGCATTCTAGTGAGCGGTCATATACATGCGACATTTGCGAGTACAGATGTAATCGACGTAATGATCTCGTCAGACACAAGCTACGCCATTCAATTGAAAAGCTTCGATGTACTGAGTGTGAGTACAAAACAAACAAGGAGACCTTTCTTGTAAATCACAAACGGCGCAAACACTCTAAAAAGCGGTCATATGCATGCGACATATGTGAGTATAGGAGTGCATATCATAGTGACCTTGTCGAACACAAGCTGGTCCATTCTAATGTGAAGATATTCCGATGTAGTGAGTGCGACTACATAACAAACGTTAAGAGTAGGCTTGTGCGTCACGCGCGGAAGCATTCTAGTGAGCGGCCATATGCATGCGACATTTGCAGCTACAGATGTATACAGAGATCGAGCCTGGTCGCGCATAAGATATGCCATACGAATGAGAGGAAGTTCCGATGCGAAGAATGCGATTACAGAAAGTGGAAACCCGAAGCTGCTGCACTCTCCTGTGAGTTTGGTCCGAAGAGAGATTTCAACTCAACAACTACGGACTATAACATGCAGGTTGCCCCCGTTGCCCCCGCTGCCCTTATTGAAGTGTTCTGCTGTGATCTCTGTAGTTACAAGGGAACGTCCAGCCTCAACCTTGATATCCACAAGAGAAGTCATTCAGCGCAGAAGAAGTTCAAATGCAGTCGTTGTTACTTCAGAACACACGAGAAGAGTAAGCTCGACGTTCACCAGCGCACACATAGCGGAGAGGGGTCATATGAATGTGACGTTTGTTCTTTCAAGGCCGTCTTCAGCAGTGACTTAGTCACACATAAGTTGAGTCATGTTGAACATGAGGGGAGTCTTGTGAGTCACGAACGCATTCATCGAAAGATACAAGTGAGGTACAAATGCAGTCAATGTGACTTCGGTGCGTACATTAAGAGTGGCATTGTACTTCATATGCGCAAGCATACTGGGGAGCGGCCATACGCTTGCGACATGTGTACCTTCAGCAGTGCCACCAAAGGTAATCTAGTCCAACACAAACTTTCCCTGCACTCGGAGGAGAAGAAATTCAAATGCACTCGGTGTTTATTTGGATGTAACCAAACGCGCCAGTTTGCTGAGCATATGCGCAAGCATACCGGAGAGCGGCCATATGCTTGCGACATTTGCGATTACAGAGGTGCGACCAATGCTCTTCTGTCCCAGCACAAAGTACGCCATTCAAAAGAAAAGAGTTTCGGATGCGGCCAATGTGACTTTAGGACGAATCGGAATACCACGCTTAGAATTCACATCCGCAAGCATACTGGAGAGCAGCCATACGCTTGCGACATTTGTGAGTACAGATCTGCCACTTGTGGTCAACTTACCGAGCACAAGAAACGCCATTTAAAGGAGTATGAGTTTCGATGTAGCCACTGTGGCTTTGGATCGAACAGGAAGAGCTCGCTTATTGTTCACATGCGCAAGCATTCTGTTCTGTGA
Protein Sequence
MSSQLFDTENIAVKTEPDDGEDSRNIDMEDNISTATFIQPVEEYLDQKPNIQADTNFLHVDLTSEEPAELSCNGEEEEEDPLKEQPQDDELQDNLLVKSSILYYCDVCSYKFSSIRNLEYHKRGHSSEQPYACDICEYRCHLHSCLVTHKLLHSNEKSFQCQVCEYRSNYKIDLGDHNMRKHSGERPYACDICEYRYKERSSLVTHKLRHSNEKSFQCNVCEYKSNIKSSLVRHMLNHSSEQPYACDICEYICNRRSDLVRHKLRHSNEQKFQCNKCEYRSKFKARLVRHMRKHSSERSYTCDICEYRCNRRNDLVRHKLRHSIEKLRCTECEYKTNKETFLVNHKRRKHSKKRSYACDICEYRSAYHSDLVEHKLVHSNVKIFRCSECDYITNVKSRLVRHARKHSSERPYACDICSYRCIQRSSLVAHKICHTNERKFRCEECDYRKWKPEAAALSCEFGPKRDFNSTTTDYNMQVAPVAPAALIEVFCCDLCSYKGTSSLNLDIHKRSHSAQKKFKCSRCYFRTHEKSKLDVHQRTHSGEGSYECDVCSFKAVFSSDLVTHKLSHVEHEGSLVSHERIHRKIQVRYKCSQCDFGAYIKSGIVLHMRKHTGERPYACDMCTFSSATKGNLVQHKLSLHSEEKKFKCTRCLFGCNQTRQFAEHMRKHTGERPYACDICDYRGATNALLSQHKVRHSKEKSFGCGQCDFRTNRNTTLRIHIRKHTGEQPYACDICEYRSATCGQLTEHKKRHLKEYEFRCSHCGFGSNRKSSLIVHMRKHSVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-