Basic Information

Insect: Leuctra nigra
Gene Symbol: -
Assembly: GCA_934046545.1
Location: CAKOHC010003242.1:54130-65235[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.5e-05 0.0011 20.5 0.7 2 23 959 980 959 980 0.97

2 9 4e-05 0.0028 19.2 0.4 1 23 986 1008 986 1008 0.97

3 9 1.2e-05 0.00087 20.8 2.0 1 23 1014 1036 1014 1036 0.99

4 9 0.00044 0.031 15.9 2.7 1 23 1042 1064 1042 1064 0.99

5 9 2.6e-05 0.0018 19.8 2.9 1 23 1070 1092 1070 1092 0.99

6 9 0.058 4.1 9.2 1.6 1 23 1099 1121 1099 1121 0.97

7 9 7.1e-05 0.0051 18.4 0.5 3 23 1129 1150 1128 1150 0.98

8 9 9.1e-05 0.0065 18.0 1.1 1 23 1156 1178 1156 1178 0.98

9 9 0.00012 0.0089 17.6 6.6 1 23 1184 1207 1184 1207 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.5e-05	0.0011	20.5	0.7	2	23	959	980	959	980	0.97
2	9	4e-05	0.0028	19.2	0.4	1	23	986	1008	986	1008	0.97
3	9	1.2e-05	0.00087	20.8	2.0	1	23	1014	1036	1014	1036	0.99
4	9	0.00044	0.031	15.9	2.7	1	23	1042	1064	1042	1064	0.99
5	9	2.6e-05	0.0018	19.8	2.9	1	23	1070	1092	1070	1092	0.99
6	9	0.058	4.1	9.2	1.6	1	23	1099	1121	1099	1121	0.97
7	9	7.1e-05	0.0051	18.4	0.5	3	23	1129	1150	1128	1150	0.98
8	9	9.1e-05	0.0065	18.0	1.1	1	23	1156	1178	1156	1178	0.98
9	9	0.00012	0.0089	17.6	6.6	1	23	1184	1207	1184	1207	0.98

Sequence Information

Coding Sequence: ATGCCAAAACAAGAGAAAACGTCTAAGGTGCTCTTCAGGTCAAGATGTTGCAACCCCTTCAACATTCAGCATCACAGAGTCACGAGAGGACTGCGTCTAATTTCAACTTTGTTGAGGTTGAAAACACCTCAGCTTCCTGAAGGAAGTATGGTTTGTCGTCCGTGTCGAAGTAAGATTGCAAGTGACATGACTCTGCCAGATCTAGGGCCAGATGAACCGTCTCCAGCCACCCCTGCGTCAGTTCCCAGCTTGTCTTCGAGTTCAGACGGCGCTGATCCTGCACAGGTCCTCAGACCCTCAGTTCTCCCGGCAGTCGCGGGCCGCACTTATGAGCAAGAAGTTGTTGTTTCGGCTTTGAACGAAGGTTTGGCGCTGCTTCCAATATCTCCTGTCGTGCTTAAAAAACTAACGCAAGGGAAGTACCCGCTAGCGAAGCAGAAGGAGATTGCCAAGGCGATAGAAGCAGTACTTGTACCAACGGCATCGACGTCAACAGCTGAgcctgaagaagaaagcgaggAGAGTGAAATCATTCGACAGTTAAAAGAAAAGTTCAAGTCTACAAAAGACAGGAGCGTGCAAGTGCAAATACTGACAGTACTTCCACAAAGTTGGTCACGTGCGAAAGTTCAAACTGTGTTTGGAACAACCGAGTATATGGCACGCTTAGCCCACGATATTGTTCTAGAAAAGGGAATCCTCTCGTCTCCTAATCCCAAACCAGGGAAAACTCTCTCTCAGAAGATCGTTGATGACGtcatatcattttataattccGATGACGTCAGCCGATTAATGCCTGGTAAAAAagactgcaagtcagtgcagcgCGAGGGCAAGCGAGTTGTGGTGCAGAAAAGACTTATTCTAAGCAACCTTCGCGAGCTTTATCGAGTGTTTAAAGATCAATTTCCAGACCATAAAATAGGATTTTCCAAGTTCGCGGACCTTCGTCCCAAGGAATGTGTGTTGCCAGGAGCAAGCGGAACTCACAGCGTATGTGTCTGCACAATACAtcaaaatatgatattgatgatgattggtGCGAAAATTGCAGACATTTCGGCCCAAGATGAGATgcctttaaaaacatttaaagaaTGCATATCGGCTGTCATATGCAACAACCCGCAAGTGTCCTGTTACTTCGGCGAGTGCCCAGCGTGTCCTGGAGTAACGCACCTCAAAGAGCACCTACGAGAACGCATGGATGAACATGCATATGAAGACATTACGTTTAAAAGGTGGGTGGCAGTTGACAGGTGTTCTCTGGAAATAGTGACAATGAAAGTGGATGATTTTCTGGACAGCTTTTGCGACGCATTAGCCATCTTAGTTCGTCACTCGTTCACCGCCACAAAACAGTCGGAATATCACAAGGAACTGAAGACCAAGCTTCAGCCAGGAGAGTTCCTTGTGATTTGCGATTTCGCGGAGAACTATTCGTTTGTGTTGCAGGACGAAGCCCAAGGGTTTCATTGGAACAATTCGTCGGCCACGATCCACCCATTTGTAGCATACTACAATGAGGATGGCGAACTGCATCATGTCAGCCTTGTTGTAGTGTCCGATTGTCTGACACACAATACGGTGGCCGTACATTTGttccaaagaaaattaattgagcTTCTTACCAGTGTGTGTAACACCAGACCAACAAAAATCTTCTATTTTTCTGACGGCGCTGCGTCGCAATACAAAAATAGGAAGAATTTTGCAAATCTGTGCTGTCATGAAGAAGACTTTAACATCAAGGCAGAGTGGCATTTCTTTGCGACGTCGCATGGGAAAGCAGCATGTGACGGGGTTGGAGGGACCGTCAAGAGATTGGCCGCTCGTGCCAGCTTACAGCGCCCCTACGATGACCAGATAATGACCCCGATGCAGCTGTATAACTGGGCGAACACGAACATTCAAGCCATCAACTTTGCTTTCTGCACTGAAGCGGACCACGAGACAGAAGCAAATGTGACGCAATACGATATATTTTCTAAATTAATCTGTTCAACGTGCTATGAGTTGGTCGATCAGTTCTACTCATTCCGTGAGAGTTGCTTGGCGAATTACGTCAGTCTGCAGCTGCTGTGCAGCGGGCCGAAGGAAGTGATCTTGGGAGAAGAGGACTTGATGGAGAATGCTCCAGACATTCCAGAAGAACCATGCAGCGAAGTGAACATCACAACAGCAATCGAACTCCCTAATTTAGTAGACACAATTAAAATGGATGATTTAACTAGCAGCTACGACGACGATGTGACTCTGGATCAAACCGACTATGAAGTTGGAGGCATTGAAGAGGTAAACATTGCAAGTGAAGTGAATTGCGAGGATGAAGATGACAATTGTGCGCTGGAAAGTCCCGAGATAAATGACTCGCCCGAGGAGACTGTTGCCATGGAAACCTTGGTTCTAGACTATGCTACAGTCGAAAAGGAAGGCGAAGAATTTCAGTTGAAGGAAGAAAATTATCCGTGTGATGATCGAGGGTACGAGGAGATTTGTGTATATGGCAACAACTATAGCAGAAGTAGCTCCGCTTGCGATGAGGAATATACCGTCAGTGATGCTGATGTACAGAAGACAGTTTATGGTTCAGATCAGTTGACTGATAATATTGAGCCAGAAGAGTTTGACAATTCAGATCAGGCGAATCGTTTTGTTTGTGAAGTTTACTCTGAAATATTCGACAGTCTAAATGAATTAAATGAACATCAAGAGTCTTGCTTTGAGGGGATGGAGGATGACCTTGCCAAAGAACCAAGTGTAACAGCGGATGCAGTGCAGTCCGATATATCTCACTACCTCGTGTTGAATCTTCCAAAACCTGCTTTTTTTACCGGAACTTCAGCTAAGAGTTCCGGGAAGTCGAAACGCTCGTGTGACTTGTGTCACAAATCATTTGGATCCCCGAATCAGCTGGCGGCTCACATCCGCACGCACACCGGCGAGCGTCCATTCTCGTGCGACGTTTGTCAGCGCGCGTTCAGTCAGCTGGGAGCGTTGCGCAACCACCAGAACCAACACACCAACAACTTCCCCTACGAGTGTAAGGTGTGCAAGAAGGGATTCTGTCGACCGTCCGACGTCTCCAAACACTTGCGTATCCACACGAACGAGAGGCCGTACAAGTGCTCCTTCTGCGACCTCCGCTTCCATCAGCTGAGCGGCTTGACCGTGCACGAGCGGACGCACAGTGGGGAGAGGCCGTATTCGTGTAACATCTGTCAGATGAGTTTCACCCAGCTCTCAAACAAATATCGACATATGAAGACCCACGTCGGAGGTTTGAAGCCGTTCACCTGTAGGAGTTGTTACAAGAAGTTCGCCGACTTCGATGAGTTCGAATTGCATAGACAGGCTCACACCGGAGGAAGTCCGAGATTGTGTCCGTTTTGCGGTCAGGCATTCCAGAAGCAGAGCCAGCTGCGAGATCATCTGAGGCGGGTTCACACAAACGATAGACCTTTTACTTGTGAACTGTGTAGCAAATCATTCTTCATGTCCAGTGATCTCAAGAGCCATCTGCTTGTTCACACCGGCGAGCGACCCTACAGTTGCGACCATTGCCAGCAGGCGTTCACGCAGGTGAGCAATCTGAAGCGGCACAAACGCAGGTGCCACAAGGCACCCATGCAGGCCACACCTGAGATGATTCTTCCAAACAACTTATATGATGTGGAGTCACTGGATATGGATAATATGGACATGCTACAGTTTGATCATGCTGAATTATAA
Protein Sequence: MPKQEKTSKVLFRSRCCNPFNIQHHRVTRGLRLISTLLRLKTPQLPEGSMVCRPCRSKIASDMTLPDLGPDEPSPATPASVPSLSSSSDGADPAQVLRPSVLPAVAGRTYEQEVVVSALNEGLALLPISPVVLKKLTQGKYPLAKQKEIAKAIEAVLVPTASTSTAEPEEESEESEIIRQLKEKFKSTKDRSVQVQILTVLPQSWSRAKVQTVFGTTEYMARLAHDIVLEKGILSSPNPKPGKTLSQKIVDDVISFYNSDDVSRLMPGKKDCKSVQREGKRVVVQKRLILSNLRELYRVFKDQFPDHKIGFSKFADLRPKECVLPGASGTHSVCVCTIHQNMILMMIGAKIADISAQDEMPLKTFKECISAVICNNPQVSCYFGECPACPGVTHLKEHLRERMDEHAYEDITFKRWVAVDRCSLEIVTMKVDDFLDSFCDALAILVRHSFTATKQSEYHKELKTKLQPGEFLVICDFAENYSFVLQDEAQGFHWNNSSATIHPFVAYYNEDGELHHVSLVVVSDCLTHNTVAVHLFQRKLIELLTSVCNTRPTKIFYFSDGAASQYKNRKNFANLCCHEEDFNIKAEWHFFATSHGKAACDGVGGTVKRLAARASLQRPYDDQIMTPMQLYNWANTNIQAINFAFCTEADHETEANVTQYDIFSKLICSTCYELVDQFYSFRESCLANYVSLQLLCSGPKEVILGEEDLMENAPDIPEEPCSEVNITTAIELPNLVDTIKMDDLTSSYDDDVTLDQTDYEVGGIEEVNIASEVNCEDEDDNCALESPEINDSPEETVAMETLVLDYATVEKEGEEFQLKEENYPCDDRGYEEICVYGNNYSRSSSACDEEYTVSDADVQKTVYGSDQLTDNIEPEEFDNSDQANRFVCEVYSEIFDSLNELNEHQESCFEGMEDDLAKEPSVTADAVQSDISHYLVLNLPKPAFFTGTSAKSSGKSKRSCDLCHKSFGSPNQLAAHIRTHTGERPFSCDVCQRAFSQLGALRNHQNQHTNNFPYECKVCKKGFCRPSDVSKHLRIHTNERPYKCSFCDLRFHQLSGLTVHERTHSGERPYSCNICQMSFTQLSNKYRHMKTHVGGLKPFTCRSCYKKFADFDEFELHRQAHTGGSPRLCPFCGQAFQKQSQLRDHLRRVHTNDRPFTCELCSKSFFMSSDLKSHLLVHTGERPYSCDHCQQAFTQVSNLKRHKRRCHKAPMQATPEMILPNNLYDVESLDMDNMDMLQFDHAEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -