Lnig020449.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- -
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010001871.1:1-18447[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.68 49 5.8 2.1 1 23 122 145 122 145 0.97 2 23 0.54 38 6.2 0.3 3 20 154 171 153 172 0.95 3 23 0.039 2.8 9.8 3.6 1 22 177 198 177 198 0.95 4 23 0.6 43 6.0 0.8 2 20 208 226 207 229 0.91 5 23 6.5 4.7e+02 2.8 0.1 2 13 289 300 288 302 0.86 6 23 0.00086 0.061 15.0 7.0 1 23 754 776 754 776 0.98 7 23 0.051 3.6 9.4 0.8 1 23 782 804 782 804 0.97 8 23 0.024 1.7 10.4 3.9 1 23 810 832 810 832 0.99 9 23 0.13 9 8.1 3.3 1 20 838 857 838 860 0.94 10 23 7.2e-05 0.0051 18.4 1.5 3 23 868 888 867 888 0.99 11 23 0.007 0.5 12.1 1.0 1 23 894 916 894 916 0.98 12 23 2.1e-05 0.0015 20.0 5.9 1 23 950 972 950 972 0.98 13 23 0.0018 0.13 14.0 1.0 1 23 979 1001 979 1001 0.99 14 23 0.082 5.8 8.7 3.6 1 23 1007 1029 1007 1029 0.98 15 23 0.0011 0.078 14.6 0.2 1 23 1035 1057 1035 1057 0.97 16 23 0.00059 0.042 15.5 1.1 1 23 1063 1085 1063 1085 0.98 17 23 0.17 12 7.7 1.2 1 23 1091 1113 1091 1113 0.98 18 23 0.0092 0.65 11.7 1.6 1 23 1119 1141 1119 1141 0.97 19 23 0.00024 0.017 16.7 0.9 2 23 1148 1169 1147 1169 0.97 20 23 0.19 13 7.6 1.6 1 23 1175 1197 1175 1197 0.98 21 23 0.067 4.8 9.0 1.7 1 23 1203 1225 1203 1225 0.98 22 23 0.041 2.9 9.7 1.5 1 23 1231 1253 1231 1253 0.97 23 23 0.029 2 10.2 2.9 2 23 1260 1282 1259 1282 0.96
Sequence Information
- Coding Sequence
- AGCCCTGCGGACACGGAGTTGGACGGAACCGTCAAGGTCGAAGAAGATGAAGTGGACGTGAAGCCTGACCTCGACCTGATGCCCACCTTCGAGCGCCATTACGTCTACCTACAAGAACCAGCCTTGGACGTAGACAACTCTGAATCCACCTCGGTGCAAGTGAAACAAGAATCAGATCCTTTCACAGCTTCGCCTTCCGTAACTGGTGTAAGCGTCGATCAAGAAGGCAGTGCATCTACGTTGGTTGTTCCCCGAAATGGAACTAATTGTTGGAATCGTGTGTCGCTTACTGCTGTCAATCATCAACCCAAAACATCGTCGACTGTTTGGAAGGAGGtgaatttaaatcaatacaaCTATTCGTACAAGTGTACCTCGTGTATGAAGGTATTTCCGAAGAGAGAGCTAAGGTTGCGACACACAACCACAAACCATGCCGACCAACCTTGTAGAAACGCTTGTAGATTCTGTAAGCAAGCGTTCAAGTATTCTTGGTTCTTGAAAATCCACCTCGGTCATCGGCGCGAGTATCGGTGCGACTGCTGCGAAATCAgcttcaagactcggtcgcgTTTGACTCGACATTTGAAGAAGATGTCGCGGCTCAATAAATCCTCGCTGACGTGCGGCATCTGTCGAATTGTGTTCACGTGTAAAGACAGTCTGGCGAAGCACGTGCCGAAACACCGTAACTGTCCCAACAGGTGTTTCTTTCGCATTCGAGACGCAACCGAGAGGTCTCTGCTGCGAGCGCACTTCAAACTGCATTCGAATTGCGTGCAAGTTCCCTGTGTAAAATGCAACGACAACACTTTCTTCTTACGCTACGAAACCGATAAATTCTCGGAGAGGGCGAGGATAGTGGAATGTCAGGAGTGCGGCGAGATATTTGGTTCAAAGTGGAAACCCGAAGCTGCTGCACTCTCCTGTGAGTTGGGTCCGAAGAGAGATTTCAACTCAACAACTATGGCCTATAACATGCAGGACTCAGCGAGTGACGCGATTCAAGAAGTTGAACGAGGGAATATATTCTCGGAGGAAAGTGCCTACTTGGAGTCTTTAGCCGATGTCGATCCTCTGACAGATCCTCTGGCTTTGGATATAAAACCGAAGCTGGAGGCTGTTAAAGAGGAACCAAATGAACCAAATCTGGAGGCTGTTAAAGATGAAGCAATTGAACCAAATCCGGAGGCTGTTAAATATGAACCAAATGAACCACATCTGCAAGCATCAGTACCAGACCTCGAGGCTGCCGATGTGGAAGCAATTGAACCAAATCTAGTTTATGTTCAAGAGGAAGCAACTGATATAAATCTGGAAGCTGTTGAAGAGGAAGAACCGGAACCAGATGTGATTGATTTCGAAGTGGAGGAAACGGAACTAGATGTGGAGGATATCAATGTGGAAGCATCAGAAGCAGATGTGGAGGATATCAATGTGGAGGCATCAGAACTAGATCTGGAGGAGTTAAAAATGGAGGCAATTGAACCTGTTCATCAGCTGACTATCATAGAGGAGGCAGAATGGCCGTCGGTTCCTGAAACCGAGTCAGCTGTCGACCCGCTCTCCACTGTCAAGACTGAAGTGAAAGCCGAGGTTGAGTCGTCTTCATCCGTTGACCCGCTTTCAATGACCATCAAGACGGAGTTGGAAGAACCAGTGACGAGGCAAGAACCAGTTACAAGGCAAGAACCAGTGACGAGGCAAGAACCAGCTACGGGGCAAGAACCAGCTACGAGGCAAGAACCAGCTACGAGGCAAGAACCAGTTACAAGGCAAGAACCAGTGACGAGGCAAGAACCAGCTACGGGGCAAGAACCAGCTACGAGGCAAGAACCAGTTACGGGGCAAGAACCAGTTACGGGGCAAGAACCAGCTACGAGGCAAGATCCAGGTACGGGGCAAGAACCTGCTACGAGGCAAGATCCAGGTACGGGGCAAGAACCAGGTACGAGGCAAGAACCAGGTACGGGGCAAAAACCAGGTACGGGGCAAGAACCAGGTACGGGGCAAGAACCAGCTACGAGGCAAGAACGACGGCCAGGTCCGAGTCCACCCCGGCTAGTGTTGTTTGCCTACATGCCGAGCACCAGCCGAGTACGAACACCTAGTCTTCAGGTCTCAGATCAGCGTACTGTTGACACGCGTCTTATTTCCAAGTACAAACTTAAGCAATGTTCCGTATCCATTACAAGATGTCTATCAACAAATGTTACGGTACGAACGGCACGAGTCAAACCACATTACGGCAGCAAACGACATCAATGCAAGCACTGTGACTATAGTGTTCACAAGAAGAGCGGTCTCATAAATCACATGCGTACTCATTCTGGAGAGCGTCCATTTGCATGCGACATCTGCTCCTTCACAAGCGCCTTAAAAGGCAACATGATGAAACATAAACGACGACACAATTCGGGGAAGCAGTTTAAATGTAACGAGTGCAACTACCGAACCCACATCAAAGGTGATCTTCATGCTCACGTGCGCACACATTTAAGCGACAGGCCGTACGCATGCGATGTCTGCAGTTTCAGAAGTAAGACCAGCAGCAACTTGACTACTCACAAGTTATGCCATTCGTCTGAGAGGAAGCACGGATGCGACATTTGTAATAAGAATTTTAAATCCAGCGCCCAACTTAAACAACACAAAATGAAACACACCACGGAGAAAAGGTTTCAATGCAGTCAGTGTAAGTTCAGATCGTACACTAAAGGATCCCTTGCCGAACATGTGCGTATACATTCCAGCGAGCGTTCACATGCCTGCGATCTTTGTTCTTTCACGAGTAAGACCGAAGGTAGCATGAGGCAACACAAACTATGTCATTCATCAGAGCGGAGGCACAAGTGTAAAATTTGCTCGAAATCATTCAAGACTAGCGGGAAACTGAAGAGACACAAACTAACTCACTCGTCAGATAAGTCGCGGTACCAATGTGACTTGTGCACTAACAGTTACAAGACCAGTGAAGGACTGGCTATGCATAAGCGACGCCATACATCAGAGAAGAGTTTCCACTGTACCCAATGCAAGTACACATCATACACTAAGCAAGGTGTTGTGGAACACATGCGCACACATACGGGTGAGCGTCCGTTTGCTTGTAACATTTGTTCGTATACAGGCGCCACCAATAGCAGTTTGGCGGCTCACAAGAAGACTCATACCGGAGCTAAGCCATACAAATGTGACGTTTGTTCCTCTACATACTCTAACAAAGCTTCCCTGACAAGTCACAAGCAAATCCATCTAACGGAGAAAATTTTCAACTGCAGTCAATGCGACTATGGAACGCACAGGAAGCCGGATATTGTCGTCCATTTGCGTAGACATCTGGGCGAGAGGCCGTTTGCTTGCGACATTTGCTCGTACAAGGCTACAAGCCGAAACCATTTGACAGCTCATAAGAAAATACATGTTGCAGCTAAAAGGGTTGAGTGCAACATCTGTGACTCTACGTTCTCTCGCATGAGTGGCCTTAAGAAACACAAATTGAAACATACAGGAGTGAAATTGTTTAAGTGTGCTGTGTGTTCTTATGCTTGCAATGAACGAAGCAGACTTACGGAACACAAGCTCGTACATTCAACAGTTAAGCCGTACAACTGTAGTCAATGCGACTATGGAACGCACAGGAGGGATGCCATTATTACACATCTGCGCAAACATTCCGGCAAGAAGCCATTTGCTTGCGACGTCTGCTCGTTCCGGACTGCCACCAAGGCCCATCTTGACGCCCACAAGAAGAAACACTCTGAAGTGAAAGCTCTGAAGTGCCGCAAGTGTGCGTACTCTTGTGAGCGTCTTGGTAACATGACAATACACATGAGAAAATACCACAAGTAG
- Protein Sequence
- SPADTELDGTVKVEEDEVDVKPDLDLMPTFERHYVYLQEPALDVDNSESTSVQVKQESDPFTASPSVTGVSVDQEGSASTLVVPRNGTNCWNRVSLTAVNHQPKTSSTVWKEVNLNQYNYSYKCTSCMKVFPKRELRLRHTTTNHADQPCRNACRFCKQAFKYSWFLKIHLGHRREYRCDCCEISFKTRSRLTRHLKKMSRLNKSSLTCGICRIVFTCKDSLAKHVPKHRNCPNRCFFRIRDATERSLLRAHFKLHSNCVQVPCVKCNDNTFFLRYETDKFSERARIVECQECGEIFGSKWKPEAAALSCELGPKRDFNSTTMAYNMQDSASDAIQEVERGNIFSEESAYLESLADVDPLTDPLALDIKPKLEAVKEEPNEPNLEAVKDEAIEPNPEAVKYEPNEPHLQASVPDLEAADVEAIEPNLVYVQEEATDINLEAVEEEEPEPDVIDFEVEETELDVEDINVEASEADVEDINVEASELDLEELKMEAIEPVHQLTIIEEAEWPSVPETESAVDPLSTVKTEVKAEVESSSSVDPLSMTIKTELEEPVTRQEPVTRQEPVTRQEPATGQEPATRQEPATRQEPVTRQEPVTRQEPATGQEPATRQEPVTGQEPVTGQEPATRQDPGTGQEPATRQDPGTGQEPGTRQEPGTGQKPGTGQEPGTGQEPATRQERRPGPSPPRLVLFAYMPSTSRVRTPSLQVSDQRTVDTRLISKYKLKQCSVSITRCLSTNVTVRTARVKPHYGSKRHQCKHCDYSVHKKSGLINHMRTHSGERPFACDICSFTSALKGNMMKHKRRHNSGKQFKCNECNYRTHIKGDLHAHVRTHLSDRPYACDVCSFRSKTSSNLTTHKLCHSSERKHGCDICNKNFKSSAQLKQHKMKHTTEKRFQCSQCKFRSYTKGSLAEHVRIHSSERSHACDLCSFTSKTEGSMRQHKLCHSSERRHKCKICSKSFKTSGKLKRHKLTHSSDKSRYQCDLCTNSYKTSEGLAMHKRRHTSEKSFHCTQCKYTSYTKQGVVEHMRTHTGERPFACNICSYTGATNSSLAAHKKTHTGAKPYKCDVCSSTYSNKASLTSHKQIHLTEKIFNCSQCDYGTHRKPDIVVHLRRHLGERPFACDICSYKATSRNHLTAHKKIHVAAKRVECNICDSTFSRMSGLKKHKLKHTGVKLFKCAVCSYACNERSRLTEHKLVHSTVKPYNCSQCDYGTHRRDAIITHLRKHSGKKPFACDVCSFRTATKAHLDAHKKKHSEVKALKCRKCAYSCERLGNMTIHMRKYHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -