Lnig035371.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- -
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010004545.1:7317-8597[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.3e-05 0.0017 19.9 2.9 1 23 66 88 66 88 0.98 2 12 0.0031 0.22 13.2 3.2 1 23 94 116 94 116 0.97 3 12 9.1e-05 0.0065 18.0 0.9 1 23 150 172 150 172 0.98 4 12 0.00025 0.018 16.7 0.6 1 23 178 200 178 200 0.97 5 12 0.0041 0.29 12.8 3.3 1 23 206 228 206 228 0.99 6 12 7.4e-05 0.0053 18.3 1.7 1 23 235 257 235 257 0.97 7 12 0.0011 0.077 14.7 1.4 1 23 263 285 263 285 0.99 8 12 0.0017 0.12 14.0 4.6 1 23 291 313 291 313 0.98 9 12 0.00049 0.035 15.7 2.8 1 23 319 341 319 341 0.99 10 12 0.00088 0.063 14.9 0.2 3 23 349 369 347 369 0.97 11 12 0.0013 0.09 14.4 4.0 1 23 375 397 375 397 0.99 12 12 0.00023 0.016 16.8 1.1 1 23 403 425 403 425 0.97
Sequence Information
- Coding Sequence
- ATGTTACGTCGAAAACCCAATATTCGAGCATTAGGAGACGACGAGGTAGAACAAGATCAGCTTAAAATTGGTGAAACCGGCTTCTTTCATGTTCAAATCAAATCGGAAGAACATTCTGAACTGTCGAGCGAGGAGAGCCGAAGTAAACCGTGCGGGAAAACAAATCCTCTGAACCCGAGTGCGAAAGACGTGATATTCTCTTGCGATGACTGTTCTTACTCGAGCCGTTCCAATTACAACCTGACCCGACACAAGCGATCACATTCTACAGTCCAGAGCTTCGcgtgcagccaatgtgactacacATCGCACACCAAGAGGAACCTCGACCGACACGTGCGCAACCATTCCGGCGAGTGGCCCCTCGCATGCGTGGCCTGTTCGTTCACGAGCGAGTCCCGTCTCGAGATGTCCCATCACATGCGGTGTCACTCGGCGAAGAAGACGTACGTGTGCGACGCGTGCGGTTACAGATCGCATAACAAGAGTAATCTCGTGGTCCACCTGCGAACGCACTCCGGCGAGCGGCCGTTTGCTTGTGATGAATGCGAGTACAGGTCTACCAACGTCAGCAACTTGACGCAGCACAGGAAGATACATACCGCGGAGGGGAGTTATCGATGTAGCCAGTGTGACTTTGTATCGAGGACCGTGAGAGATCTTTTAAATCATCACCGAAAGCATTCTTCGGAGAATGACGAGTTTTCCTGTGACTTATGCCCTCGGAGGTTTGCGTACAAAAGTTCAATGACCAGACACAAGTTAAGTCATAGAAATGAGGGACAGTTTCAGTGTAGTAATTGTGAATTTAAATCTAACTCCAGGTTGAATCTCATCGACCATATGCGCTCTCATTCGGAGGTGCAGCCGTACGCATGCGATCGCTGCAGCTATACTTGCAGGCAGAGCAGTACGTTGTTAAATCACAAGCGCCGTCATTGTAAAGATAAGCAGTTTAAATGCAGCAAGTGTGATTACACAACGCATACTAAAGGAGACCTCGACATCCACTTGCGATCGCATACCGGCGAGCGGCCGTACGGTTGCGACGTCTGCTCGTTCAGGTTCGTGACGAGCTCCGCGCTGGCCAATCACGTGAAACTGCACACGACGGAGAAGGAGTTCAAGTGCGGTGAATGTGATTACAGTGCGCACGTGAAGCACAGTCTTAACAGTCACATGAGACGGCATACGGGCGAGCGGCCGTATGCTTGTGGGAGATGTTCGTATACGGGGCGCTCCAGTAGTAACTTGAGGAGTCATATGAAGCAACACAAATAA
- Protein Sequence
- MLRRKPNIRALGDDEVEQDQLKIGETGFFHVQIKSEEHSELSSEESRSKPCGKTNPLNPSAKDVIFSCDDCSYSSRSNYNLTRHKRSHSTVQSFACSQCDYTSHTKRNLDRHVRNHSGEWPLACVACSFTSESRLEMSHHMRCHSAKKTYVCDACGYRSHNKSNLVVHLRTHSGERPFACDECEYRSTNVSNLTQHRKIHTAEGSYRCSQCDFVSRTVRDLLNHHRKHSSENDEFSCDLCPRRFAYKSSMTRHKLSHRNEGQFQCSNCEFKSNSRLNLIDHMRSHSEVQPYACDRCSYTCRQSSTLLNHKRRHCKDKQFKCSKCDYTTHTKGDLDIHLRSHTGERPYGCDVCSFRFVTSSALANHVKLHTTEKEFKCGECDYSAHVKHSLNSHMRRHTGERPYACGRCSYTGRSSSNLRSHMKQHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00895085;
- 90% Identity
- iTF_00895085;
- 80% Identity
- iTF_00895085;