Basic Information

Insect
Leuctra nigra
Gene Symbol
RDH11
Assembly
GCA_934046545.1
Location
CAKOHC010002811.1:38854-59299[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.0039 0.28 12.9 0.4 1 23 397 419 397 419 0.97
2 17 0.046 3.3 9.5 1.5 1 23 429 451 429 451 0.98
3 17 0.0042 0.3 12.8 1.9 1 21 457 477 457 478 0.95
4 17 0.01 0.75 11.5 0.4 1 23 485 507 485 507 0.95
5 17 0.018 1.3 10.8 2.1 2 23 514 535 513 535 0.97
6 17 9.4e-05 0.0067 18.0 1.3 1 23 541 563 541 563 0.97
7 17 0.0053 0.38 12.5 3.7 1 23 569 591 569 591 0.99
8 17 0.0002 0.014 16.9 0.8 1 23 597 619 597 619 0.97
9 17 0.014 0.98 11.2 5.9 1 23 625 647 625 647 0.98
10 17 0.017 1.2 10.9 0.5 1 23 653 675 653 675 0.97
11 17 0.084 6 8.7 5.0 1 23 681 703 681 703 0.97
12 17 8.4e-05 0.006 18.1 0.5 1 23 709 731 709 731 0.97
13 17 0.0099 0.71 11.6 4.8 1 23 737 759 737 759 0.98
14 17 0.017 1.2 10.9 0.5 1 23 765 787 765 787 0.97
15 17 0.067 4.8 9.0 4.5 1 23 794 816 794 816 0.97
16 17 0.007 0.5 12.1 3.0 1 23 822 844 822 844 0.96
17 17 0.0063 0.45 12.2 2.6 1 23 850 872 850 872 0.99

Sequence Information

Coding Sequence
ATGCCGCTGTTCAGTGGCAAGTGCACGAGCAAGGCGCGGCTGGACGGCAAGACAGCGGTCATCACGGGCTGCAACACGGGCATCGGCAAGATCACAGCAGAGGACTTCATCAAGAGAGGGTGCCGTGTTGTTATGGCgtgtcgtgacgtcagcaaGGCGGAGGTCGCCGCCAAGGAGATCCGTCAAGAGACATTAGGCGTCGCTGACGTCGGGACGGTGGTCGTCGTGCGTCTGGATCTGTCCAGCTTCGCGTCAGTCAGACAATGCGCCGCAGAACTCTTGCGCACAGAACCACAGATCAACCTGCTCATCAACAATGCTGGCGTGATGATGTGTCCCAAGGGCTTGACCGAGGACGGATTCGAGACGCAATTCGCCACCAACCACTTGGGCCACTTCCTCTTCACTCTGCTCCTGCTGCCCAAGATCATCAAGTCAGCGCCAGCCAGGATCGTCAACGTCTCTTCCATGGCACATTCAAGAGGCGACATCCACTTCGACGACATCAACTTCGACAAGTCCTACAACTCCATCACCGCCTACGCGCAGAGCAAACTGGCCAACGTGCTGTTCTCTCGCGAGCTCTCCAACAAGCTGCAAGGGACCGGCGTCACGACGTACTCCTTGCACCCCGGCGTCGTGCGCACGGAGCTGGGACGCCATCTGGACTCCGCCCTCTTGCCCGGCGCCAGGTGGTTGTTCAGCAACGTCACTGGATGGTTCATTAAGACGCCGGTTCAGGGCGCTCAGACCAGCATCTACTGCGCCGTGGAGGAGGCGGTCGCTCAGGAGACCGGACTTTATTACAGTGACTGTCAGAAGAAGACGCCATCGTCCAAGGCACGTGACCCTCAGCTCGCCACTCGACTCTGGACTGAGAGTTTGAAGATGGTGGGACTGGAGAACTACGATCCTCTCACGGGGCAAGATCGCAAAGCGCCAAGAGAAGAGTTTGATTGTCAAGTCAATGAGAACTTCTCGGCTGCAGTCAGCAGTTCGCTGTCTCTTCCAAGACACGGTGGCCGCAAGACGTATCCTGCCGTTGCCCGCGCTACACCGGAAGCCACGCAGGACCAACTCGCCACAACTAGCGGCCTGCACAAGGAGAGGAGCAAGGAGTGGACAGTGTCCAGTGCCAACACTAACAATGTGTCACACCACATGCTTGTTTCTGCCACCGCCAGACACTACGACTGCGCACACTGCCCCGCCAAGTTCAAGACACGGGACGGAATTAAACAACATCTTGCCGTGCACCAGCTAACTCACACCACAGACCGACTATTCTCTTGTGAATCATGCACTTACAGTAGTGCCATTAGGAGGAACTTAACAAGACATAAGAAGATCCATTCCTCTGAGAAACCACACAGATGCACTTTATGTGAATATAGAACAAAAACGTCAGGACAACTTACCAAACACAAGCGCATACCTTCGGGTGAGAGGTCCTACGCATGCACCATCTGCTCTAACAAGTCTTCCAAAAGCAGCAACTTAGCAAGACACAATGAGATCCATTCCTCTGAGAAACCGTTGCAATGCGCTTCATGCGAATATAGAACACACAACAAGAGTTACCTTGTCATTCACCAGCGTACACATACGAGCGAGCGGCCCTACGCTTGCACTGTCTGCTCCTACAAGTCTTACACAAGAAGTGACCTAACTAGACACATGAAGATCCATTCCTCTGAGAACTCGTTCCGATGCGCTACATGTGAATATAGAACACACACCAAGAGAAACCTCGTCATTCACCAGCGTACACATTCCCGTGAGCGGCCCTACGCTTGCACTGTCTGCTCTTACAAGTCTTACAACAGTAGTGACCTAACTAAACACATAAAGATCCATTCCTCTGAGAAACCCCACCGATGCGCTACATGTAAATATAGAACACACACCAAGAGTGACCTCGTCAAGCACCAGCGCATACATTCGGGCGAGAAGCCCTACGCTTGTACTGTCTGCTCCTACAAGTCCTACCTTAAAGGTAACCTAACTCTGCACATGACGATCCATTCCTCTGAGAAATCCCACCAATGCGCTACATGTGAATATAGAACACACACCAAGAGAAACCTGGTCAAGCACCAGAGTATACATTCGCGCGAGCGGCTCTACGCTTGCCCTGTCTGCTCCTACAAGTCTTACACAAGAAGTGACCTAACTAAACACATAAAGATCCATTCCTCTGAGAAACCCCACCGATGCGCTACATGTGAATATAGAACACACACCAAGAGTGACCTCGTCAAGCACCAGCGCATACATTCGGGCGAGAAGCCCTACGCTTGTACTGTCTGCTCCTACAAGTCCTACCTTAAAGGTAACCTAACTCTACACATGACGATCCATTCCTCTGAGAAGAAACCCCACCGATGCGTTACATGCGAATATAGAACACACACCAAGAGTGACCTCGTCAAGCACCAGAGCATACATTCGGGCGAGAAGCCGCACGCCTGTACACTTTGCACATACACGAGTCGCAGCAACAGCGGACTGAATAACCACAGGAAGTCGCACTTACAAGTGAAACCCTATCAGTGTGCCCACTGCGACTATTCGAGCATTAGAAAGTTTCGCCTGGTTGGACACATGAAGCGGCACCAATAG
Protein Sequence
MPLFSGKCTSKARLDGKTAVITGCNTGIGKITAEDFIKRGCRVVMACRDVSKAEVAAKEIRQETLGVADVGTVVVVRLDLSSFASVRQCAAELLRTEPQINLLINNAGVMMCPKGLTEDGFETQFATNHLGHFLFTLLLLPKIIKSAPARIVNVSSMAHSRGDIHFDDINFDKSYNSITAYAQSKLANVLFSRELSNKLQGTGVTTYSLHPGVVRTELGRHLDSALLPGARWLFSNVTGWFIKTPVQGAQTSIYCAVEEAVAQETGLYYSDCQKKTPSSKARDPQLATRLWTESLKMVGLENYDPLTGQDRKAPREEFDCQVNENFSAAVSSSLSLPRHGGRKTYPAVARATPEATQDQLATTSGLHKERSKEWTVSSANTNNVSHHMLVSATARHYDCAHCPAKFKTRDGIKQHLAVHQLTHTTDRLFSCESCTYSSAIRRNLTRHKKIHSSEKPHRCTLCEYRTKTSGQLTKHKRIPSGERSYACTICSNKSSKSSNLARHNEIHSSEKPLQCASCEYRTHNKSYLVIHQRTHTSERPYACTVCSYKSYTRSDLTRHMKIHSSENSFRCATCEYRTHTKRNLVIHQRTHSRERPYACTVCSYKSYNSSDLTKHIKIHSSEKPHRCATCKYRTHTKSDLVKHQRIHSGEKPYACTVCSYKSYLKGNLTLHMTIHSSEKSHQCATCEYRTHTKRNLVKHQSIHSRERLYACPVCSYKSYTRSDLTKHIKIHSSEKPHRCATCEYRTHTKSDLVKHQRIHSGEKPYACTVCSYKSYLKGNLTLHMTIHSSEKKPHRCVTCEYRTHTKSDLVKHQSIHSGEKPHACTLCTYTSRSNSGLNNHRKSHLQVKPYQCAHCDYSSIRKFRLVGHMKRHQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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