Lnig040619.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- -
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010006392.1:223430-225859[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.1e-05 0.0022 19.5 1.2 2 23 280 301 280 301 0.98 2 12 6.6e-05 0.0047 18.5 1.4 1 23 305 327 305 327 0.98 3 12 8.4e-05 0.006 18.1 2.1 2 23 334 355 333 355 0.96 4 12 1.6e-05 0.0012 20.4 2.2 1 23 360 383 360 383 0.97 5 12 1.2e-05 0.00085 20.8 0.2 1 23 392 414 392 414 0.98 6 12 3.3e-05 0.0023 19.4 2.8 1 23 446 468 446 468 0.98 7 12 0.016 1.1 11.0 4.2 1 23 473 496 473 496 0.91 8 12 0.047 3.4 9.5 5.4 1 23 500 522 500 522 0.98 9 12 0.0058 0.41 12.4 1.2 2 23 527 549 526 549 0.94 10 12 0.027 1.9 10.3 1.7 2 23 558 579 557 579 0.96 11 12 0.0076 0.54 12.0 2.3 1 23 583 607 583 607 0.97 12 12 0.0015 0.11 14.2 1.3 1 23 613 635 613 635 0.98
Sequence Information
- Coding Sequence
- ATGGAGCCGACAGTTATGATAGATGCTCACGGCAACAGCTTCTGGGTAATTAAGACTTTCATGCAGCCTGAGATCAACCTGGACCCAGCCTCGGACCCGCTAGCATTAGATGTCAAGCCGACTGAGCCGTCTTCTGTGAAGCTGGAACCAGGAACAGAGCCAGATCCCATGAACAATGTAACGCAGTTAGAAACTACATCAGTGAAGCAAGAAACTGATCCGTTAGCTTTTGATGCGAAGCCAGACCCTGAGCTACTAGAAGTCAAACAAGAGTCTGTGTTGCCATGGGTAGGCACTGATCCGCTAGATAATATTACAGACAATAACACGCCGAGGACTCCTAGAAGTCCACCGCGCTTCGTACCTTTAAACAGTTCCACTCGTCAGGCGCGTAGCATTGAACCTTCCGCATTGAACATTACGACTGAACCTCCATCTGTTATGCAAGATTCATTACCACAGGGAATTCTTCCAGACTCAAGATCAGCAGAAGATCAATCTTCATCGGTGCTCAACGAGACACCTCAACCAGCTGTTGCACGATCTGATTCAACCGACAACCAAGTGTTTGATTCCGTGTCTTCGCCTTGTCGTTCAGATTGTGTGGACTCTGAATCCCGAGATGATGACTCGATCCAACTCACTTCCGACACTTCTCTTGCTGTCAAATACAATCTCAAGCAATGTTCCGTGTCTCTCATAAGACTGAGTCTGTCATCCACTCACACGGCTTCTGGAATTGTCTCTGATCGCTCCCTGTTTCAATCAACCATCAAAGAACAGCCTTCAACTTCCCATGGCTTAAAACGTCCACCACACTCGAATGTACGAGATCGTAAATGTCAATTGTGTGGCAAATTATATAAATCCGAGAATGATTTAAAGGATCATATGAGGACCCACAACAAGGAATACAAGTGTGGCAAATGTGACAAGTTATTTTCGACGAAACCTCGTCTGAAGGATCACATGTTACAGCACTTGGATGTGCACGATTGCAAGTGCGATGTTTGCGGAAAGAGCTTCGTTTCAAGCGTTAGGCTTAGCTCACATAAGCGGATTCACGTGATGCCAAGATATCCTTGTAGCGAATGTGACAAGTCTTATTGTAACAAGTATGTGTTGAGGCAACACATGTCAAGCGTCCATCAGGGACCGAGCGACGGCTCCGGGTTTCCGTGCTCGTCTTGCGGTAAAGTCTTCGCGTTGAAAGAAGACCTGATGAGTCATCTGAAGACCCACGGCTTGTTCTGCGTGAGCTGCGACTTGATTTGTCCTGACGATGCGTCGATGAGAGCCCACGCGATAGACGTTCACGGCGGTGAGAGAAAGTACTACAGTTGTAAGACGTGCGACAAACAGTTCAATAGTCGGGAAAAGTTAACGAAGCACGAGAAAATCCACATCAAAACGCCGTTCCAATGTTCGTTTTGTCACAAGACATTTGTCAAGAAACGAGCCCTTGATCTTCATAGTAAAGACAAGCACTCTGTGAAATACAGCTGCGATGTTTGTAGAAAATCCTTCACGTGTGAAGAGTACATGAAGAAGCATCGAAAATCCCATTCGAAACGAGTGCAGTGTGACACTTGCAAAATAACTCTTTGTACGAAAGCCGGGCTTCGACGTCACATCTCTGAGCAACATTCCACGGAGTCCGTCCACAAGGTTTCCTGTTCCATATGCTCTCGATCGTTTCACAGCATGCCTAGGTTAAAAGAACATCAACTCAGCCACACCAAACCATTCGTTTGCGACGAACTCAAATGCAGCAAATCTTTCTGCAGTAAACTATTCCTATTGCAGCATCAAGAGGTTCACATTACTGAGAAGATTCATAAGTGTGATGTTTGCAGCAAATCGTTTGGTTTGATTAGCAGTCTGATTGTGCACAAGCGACAGCACCGTCCGAATTAG
- Protein Sequence
- MEPTVMIDAHGNSFWVIKTFMQPEINLDPASDPLALDVKPTEPSSVKLEPGTEPDPMNNVTQLETTSVKQETDPLAFDAKPDPELLEVKQESVLPWVGTDPLDNITDNNTPRTPRSPPRFVPLNSSTRQARSIEPSALNITTEPPSVMQDSLPQGILPDSRSAEDQSSSVLNETPQPAVARSDSTDNQVFDSVSSPCRSDCVDSESRDDDSIQLTSDTSLAVKYNLKQCSVSLIRLSLSSTHTASGIVSDRSLFQSTIKEQPSTSHGLKRPPHSNVRDRKCQLCGKLYKSENDLKDHMRTHNKEYKCGKCDKLFSTKPRLKDHMLQHLDVHDCKCDVCGKSFVSSVRLSSHKRIHVMPRYPCSECDKSYCNKYVLRQHMSSVHQGPSDGSGFPCSSCGKVFALKEDLMSHLKTHGLFCVSCDLICPDDASMRAHAIDVHGGERKYYSCKTCDKQFNSREKLTKHEKIHIKTPFQCSFCHKTFVKKRALDLHSKDKHSVKYSCDVCRKSFTCEEYMKKHRKSHSKRVQCDTCKITLCTKAGLRRHISEQHSTESVHKVSCSICSRSFHSMPRLKEHQLSHTKPFVCDELKCSKSFCSKLFLLQHQEVHITEKIHKCDVCSKSFGLISSLIVHKRQHRPN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -