Basic Information

Insect: Leuctra nigra
Gene Symbol: -
Assembly: GCA_934046545.1
Location: CAKOHC010001921.1:46015-49305[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.93 66 5.4 2.4 1 23 116 138 116 138 0.97

2 16 0.0002 0.014 16.9 4.0 1 23 139 161 139 161 0.99

3 16 0.025 1.8 10.4 0.4 1 20 166 185 166 187 0.95

4 16 7.8e-05 0.0056 18.2 0.3 1 21 188 208 188 209 0.96

5 16 0.00025 0.018 16.6 0.9 1 23 675 697 675 697 0.98

6 16 0.00089 0.063 14.9 1.0 1 23 701 724 701 724 0.95

7 16 0.0038 0.27 12.9 0.8 1 23 730 752 730 752 0.95

8 16 0.0016 0.12 14.1 1.4 2 23 758 779 757 779 0.98

9 16 0.00019 0.014 17.0 0.4 1 23 785 807 785 807 0.93

10 16 0.021 1.5 10.6 0.0 1 23 811 833 811 833 0.95

11 16 0.017 1.2 10.9 1.0 1 23 839 861 839 861 0.97

12 16 1.7 1.2e+02 4.6 0.3 3 23 867 889 866 889 0.83

13 16 0.12 8.3 8.3 1.1 1 23 910 932 910 932 0.92

14 16 0.025 1.8 10.3 2.6 1 23 936 958 936 958 0.98

15 16 0.0026 0.19 13.4 2.5 2 23 964 985 963 985 0.98

16 16 0.021 1.5 10.6 1.0 1 23 990 1012 990 1012 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.93	66	5.4	2.4	1	23	116	138	116	138	0.97
2	16	0.0002	0.014	16.9	4.0	1	23	139	161	139	161	0.99
3	16	0.025	1.8	10.4	0.4	1	20	166	185	166	187	0.95
4	16	7.8e-05	0.0056	18.2	0.3	1	21	188	208	188	209	0.96
5	16	0.00025	0.018	16.6	0.9	1	23	675	697	675	697	0.98
6	16	0.00089	0.063	14.9	1.0	1	23	701	724	701	724	0.95
7	16	0.0038	0.27	12.9	0.8	1	23	730	752	730	752	0.95
8	16	0.0016	0.12	14.1	1.4	2	23	758	779	757	779	0.98
9	16	0.00019	0.014	17.0	0.4	1	23	785	807	785	807	0.93
10	16	0.021	1.5	10.6	0.0	1	23	811	833	811	833	0.95
11	16	0.017	1.2	10.9	1.0	1	23	839	861	839	861	0.97
12	16	1.7	1.2e+02	4.6	0.3	3	23	867	889	866	889	0.83
13	16	0.12	8.3	8.3	1.1	1	23	910	932	910	932	0.92
14	16	0.025	1.8	10.3	2.6	1	23	936	958	936	958	0.98
15	16	0.0026	0.19	13.4	2.5	2	23	964	985	963	985	0.98
16	16	0.021	1.5	10.6	1.0	1	23	990	1012	990	1012	0.98

Sequence Information

Coding Sequence: ATGGACTACATCGAGGAGGTTCCGATCGAGCCCGATGTCGACGACTCCATCTTCCTTCTGGACGGCGACGCCCCCGACATCCGAGACGACCATCAGGAGCCGGCCTCCGATCCTCTGGCCGAGCTCTGCATCGCCGAGCCTCTCGCAATCAAGAAGTCCAAACGCGTCATCGACTTCTGCGCCGTGGAGCTGTCTTCGTCGGATGACGAGGATACCGGTCTCGTTGACTCGCCGAGGGAGATCGATCCGTTTGGCGCGTTCCCCGACGATCACGTCTCGGCTCTCGACGATGACGACGTGTTCGAACCGGTTGTCGATGTCCTCGACATAAATCCGCAGTCGAAGTACGATTGCGAGTTCTGTGAGCTCGTGTTCGACTCTCCTAAATACTGTATGACTCATACGAGACAACATTTCAAGTGTAGTAATTGTTCTAAGAGGATTTCCACGAAGCAGAAGCTTCTTCGACACATGAGAAAGCATACACCTCCGGAGTTCCCTTGTTTTTATTGTGAGTTGACTTTTGATGATTGGGATGTTTATAAGTCCCACATGCATGAGTTTAAATGTGACATTTGTTTGACGGTCTTCAGGAATCAGGCGACGTTGAAGCGGCACGTTAGGGAGTCGTATGCGTTGGACAAATGTCCGGATGTTTTGCCTTCCGAACAGATTGCCGCAGGTGGAGATGCGAAGACGGACAAGAAAGCTGCTCTGAAGAAAACAGCTGGCAGGAGCATACTGAAGGACGTGGATGTGAAGAAGGTCACCGGTTCGAAAAATACCAGAAACGTTCGAGGGAAAGTCGACAAAGTTAAGTCAGTGGAAAGTTCGAAAGCTGTATTGAAGAAGAAGGTTGCAAAAACTGCCAAGGAAACGAAAGAAAAAGCTCAGTCAGCTGAAAGTACGAAAGCTGTCGTGAAGAAGAAGGTTGCGAAAACTGCCAAGGAAACAAAAGAAAAAGCTCAAACTAATTCTAAGAAAGCTAAAAAGTCTAAATCTGCGTTGGATTTGGAGAAACCTGCTGAATCGGAAACAAAAGATCTCTCAAGTCTTGAAACTAGTATCAATGATTCCCCAGATAAAGAAGCGGCAAGTTCAAACGATGTCGAGAAAAAGAAACGAACTCGCAAGGCCAAGAATCCAAAGAAAATTACTGACAGTATTTCAGAAATAATTGTACATTCAAAATTAGATTCGACCGAGACAGCCCCTGATTCATCCGAAGTGAAGGAAGGTTTGGACGACGCCGTGAAGACGACCGGCGAAGTTGAAGGACAGAAACCCAAGAGAAAGCGTAAACCTAAATCCACAGGCGCCAACGACATTGCAGAAGATGGGAAAACTCCGGCCAAGAAACCAAGAATACGAAAATCCGTTCCGAAAGATGAAAAGAAAGAAGACGTGAAGACGGTGGCTGAGGAAGTTAAAAGCCCGGAAGCAAAGGCTACGATAGTCTCAAGAATTTCCCTCCCGAGTCTCACAAAACCAGTGAATCCGACCACCGACTCAACAGCCGAGCCCACTATCAAACCGTCTCCGATCAAACGCATGTTCGTTCTGACCGTCAAAGCCCCTCGCGGCAACACCGTCAAGCAAAACACTCCCGGCTCCAAAGACTTCATCTCGAAACTGAATCTGAAGACGAAGATCATCGACACGATCACGCTGTCGGACTCGGACGAGGGTTCCGACGACTGGCCGATGGACACGATGGACCAAGTGTGGGGCGGCGACTCGAGCGACGACGAACCTCTCAAGAAGACCGTCGTCGCTCCGACGAAACCCGACTCCAGCGAGATACGAGCGAAGGAAGTCGTCTGTCTGAACGTCCCAAAGAAGCGGAAGTACGAGAACGACGACGCTCCCGAGAACGACTTGTTTCAGAGTCTGGTCCCGATGAACGGCGCGGGTTGTTCCCGTCTCGAACCCGGTTGTTCCCGTCTCGAACCCGGCTCGGACCAGCTGCCGGACGACATCAACAAGTGGGGACGGAAGTCGGGCAGCGCGTTGAACTCCAGGTACATCTGCGACCGGTGCGACCAGGGCTTCATTTCCAAGTTCAAACTGACGGCCCATCTGAAGAAGCACGAGGCGCGGTATTTCTGCGTCAGCTGTCCTAAGACTTTCAGATTCCGAGCGAGTCTGCAGAACCACGTCGCGACGTTTCACACGCCGGTCGCTGTCCACGCCTGCGCGATATGCAAGGAGGAGTTCGCAAGCCGGAAACTGCTGCAGACGCATCGCACGGTCCACAAGTCTTCGGTCAACAAGTGTCACGTCTGCGCGAAGGAGTTCACCGGCTACAAGGGATTGACTCGACATCTGCAAATACACAAAACCGACACCGTTTTCCTCTGCGACGAATGTCCCAAGTCCTTCTCCAGCCGTCGTTATCTCCTCGCTCACAAGGTCATCCACTTGCCGAGATTCAGCTGCGACGTCTGCGGGCGCTCGTTCGGCGGGAAGCGCGGGATTGTCGAGCACGTCGCGACGCATCTGCAGGAGAAGAAGTACGCGTGCGACGTCTGCAACCGGAAGTACGGGACTCTGCGCCGGCTGCAAGACCACAAGCGGAATCACGTGAAGACGACGCTCTGTCCGATGTGCGGCGCGACGTTCCCCGCAGGGAATTCCAAGCTCAAGCAGCACATTCTCAAGAAACACACGAAGAAGGAGCCGACGATTCTGCCGAGCGGCGAGGAAGTGTCGGCGTCCGAGCCTCGGTTCCAGTGCGACAAGTGTCCGAAGAAGTTCTTGGATCAGAAGAGACTCGACCTGCACTACATCCTGCACACCGACAAGTTCAAGTGCGCGATCTGCGAGCGACGCTGCGGCACCAAGGACGTCTACACCAAGCATCTGCTGCGCCACGAGAAGGACGAGAAGCAGTGTCAGTACTGCGACCAGAAGTTCTTCAACGAGAAGCGGCTCAGAGTGCACATTCAGAAGCACTTCCCGAAGAAGTTCGTGTGCAAGCGGTGCAAAGACGAGTTCGACACCAAGCCGGAGCTGAAGCTGCATCGGCTGACGCACAAGAGGCCTCCGAGGGTGCGAGGGCCCCGCGTCAAGCACCGGCGCATCCCGCTGGAGTACTTCACGCAGTCCGAGCTCGGTGGGTCGCCGGTACACGAGGTCGTGGTCGAGTCCGAGTCGAGGTCGCCGGTGAGCGAGGTCAGGGGGCCTCCGTTGAGGGACTACTTTATCCAGGGGATCAGGGGGCCTCCCATCAGGGACATCATCATTCAAGCGGCGCGGGGGATAAGCAGTAGGGACTATATTGACCTGTAA
Protein Sequence: MDYIEEVPIEPDVDDSIFLLDGDAPDIRDDHQEPASDPLAELCIAEPLAIKKSKRVIDFCAVELSSSDDEDTGLVDSPREIDPFGAFPDDHVSALDDDDVFEPVVDVLDINPQSKYDCEFCELVFDSPKYCMTHTRQHFKCSNCSKRISTKQKLLRHMRKHTPPEFPCFYCELTFDDWDVYKSHMHEFKCDICLTVFRNQATLKRHVRESYALDKCPDVLPSEQIAAGGDAKTDKKAALKKTAGRSILKDVDVKKVTGSKNTRNVRGKVDKVKSVESSKAVLKKKVAKTAKETKEKAQSAESTKAVVKKKVAKTAKETKEKAQTNSKKAKKSKSALDLEKPAESETKDLSSLETSINDSPDKEAASSNDVEKKKRTRKAKNPKKITDSISEIIVHSKLDSTETAPDSSEVKEGLDDAVKTTGEVEGQKPKRKRKPKSTGANDIAEDGKTPAKKPRIRKSVPKDEKKEDVKTVAEEVKSPEAKATIVSRISLPSLTKPVNPTTDSTAEPTIKPSPIKRMFVLTVKAPRGNTVKQNTPGSKDFISKLNLKTKIIDTITLSDSDEGSDDWPMDTMDQVWGGDSSDDEPLKKTVVAPTKPDSSEIRAKEVVCLNVPKKRKYENDDAPENDLFQSLVPMNGAGCSRLEPGCSRLEPGSDQLPDDINKWGRKSGSALNSRYICDRCDQGFISKFKLTAHLKKHEARYFCVSCPKTFRFRASLQNHVATFHTPVAVHACAICKEEFASRKLLQTHRTVHKSSVNKCHVCAKEFTGYKGLTRHLQIHKTDTVFLCDECPKSFSSRRYLLAHKVIHLPRFSCDVCGRSFGGKRGIVEHVATHLQEKKYACDVCNRKYGTLRRLQDHKRNHVKTTLCPMCGATFPAGNSKLKQHILKKHTKKEPTILPSGEEVSASEPRFQCDKCPKKFLDQKRLDLHYILHTDKFKCAICERRCGTKDVYTKHLLRHEKDEKQCQYCDQKFFNEKRLRVHIQKHFPKKFVCKRCKDEFDTKPELKLHRLTHKRPPRVRGPRVKHRRIPLEYFTQSELGGSPVHEVVVESESRSPVSEVRGPPLRDYFIQGIRGPPIRDIIIQAARGISSRDYIDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -