Lnig011439.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leuctra nigra
Gene Symbol
-
Assembly
GCA_934046545.1
Location
CAKOHC010000915.1:801475-830233[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.0041 0.29 12.8 1.7 1 23 231 254 231 254 0.96
2 26 0.00012 0.0083 17.7 3.6 1 23 259 281 259 281 0.98
3 26 0.096 6.9 8.5 1.2 1 23 287 309 287 309 0.96
4 26 0.019 1.3 10.7 5.1 1 23 315 337 315 337 0.99
5 26 0.47 34 6.3 8.6 1 21 343 363 343 365 0.93
6 26 1.3 94 4.9 3.6 1 23 370 392 370 392 0.97
7 26 0.016 1.1 11.0 1.0 1 23 398 421 398 421 0.96
8 26 4.8e-05 0.0034 18.9 1.8 1 23 426 448 426 448 0.98
9 26 6.2e-05 0.0045 18.5 1.7 1 23 454 476 454 476 0.97
10 26 1.1 76 5.2 4.4 1 23 510 533 510 533 0.93
11 26 0.53 38 6.2 5.0 1 23 538 560 538 560 0.99
12 26 0.58 41 6.1 1.2 1 23 566 588 566 588 0.94
13 26 0.015 1.1 11.1 1.1 1 23 594 616 594 616 0.99
14 26 0.16 12 7.8 0.2 1 23 622 644 622 644 0.97
15 26 0.0025 0.18 13.5 1.9 2 23 651 672 650 672 0.97
16 26 0.023 1.6 10.5 1.3 1 23 678 700 678 700 0.95
17 26 0.041 2.9 9.7 5.7 1 23 706 727 706 727 0.98
18 26 0.17 12 7.7 0.3 1 23 733 755 733 755 0.96
19 26 0.0045 0.32 12.7 0.7 1 23 761 783 761 783 0.98
20 26 0.11 7.9 8.3 0.5 2 23 819 840 818 840 0.97
21 26 0.048 3.4 9.5 0.8 1 23 846 868 846 868 0.96
22 26 0.0025 0.18 13.5 4.0 1 23 874 896 874 896 0.98
23 26 0.054 3.9 9.3 0.6 1 23 902 924 902 924 0.97
24 26 0.013 0.95 11.2 0.8 1 23 930 952 930 952 0.98
25 26 0.0011 0.08 14.6 2.5 1 23 958 980 958 980 0.97
26 26 0.0024 0.17 13.6 4.2 1 23 986 1008 986 1008 0.99

Sequence Information

Coding Sequence
ATGGAGCCGACAGTTGTCAGAGTCAAAGCGGAGGCGACTGAAGCAGACACCGAGTCCGCTTATCCGCTTCCCTTCACACTGGACACGGAGTTGTCTTCACAATCAGAGCTGATCGATACAATCAAGATGGAGGTGGAAGAACAAGTTCCAAGAAGTCCACCTCGGTTCCTGCTCTTTGCCGATTTGCCGAGAAGAAGTTCGAGAACCAAAAGTCTTAAGGTCTCGGGTCAACGCTCTGTGGACTTGCCTGCAATCAAGCCTTGTTATGTGTCTCTTACAAGATGGCCGACATCCAACGACAAGGTCTCGGGTCAAAGCTCTGTGGACTTGCCTGCAATGAAGCCTTGTTATGTGTCTCTTACAAGATGGCCGACATCCAACGACAAGAGGGCGAATGCAGCTATGACGTCACAACTCTGGGATTCCAGCAACTTAACGCTGAAGACGGAACCTGAGGAATCTGGGGATTATGAAGCTATAAGTATAGAACACAATATAACAACAGCAACATCCATACAGCCAATTGACGAATATATCATGGAGCAGAAACCGAAGATCAGCGCAGACACAAACATATGTCATATTGAAGGAGACGCTGCATTTTCTCGCAATGATAACGATCCTGAAgcagggccaagtcaaaacatagatCCACTTAACCAGAGCCTCCTTCACCCCAAAGACTTTCCCTTTTCTTGCGATGTATGCACTTACAAGACTACCTCCAGCCGCAACCTTGCCAAGCACAAGATACGCCAACATTCAGAGAAGAAgcatcaatgcagccaatgtgactaccGATCAAATAGGAAGGATAACCTTGTCCGTCACCAGCGTCTTCATTCTGGAGAGCGGTCATTCGCCTGCGATGTATGCACGCATGAGAGTACCTCCAGCCGCGACCTTGCCCAGCACAAGAAACTCCATTATTTAGAAAAGAAGTTCCAATGCGCCCAATGTGACTACAAAACACACAGGAAGGATTGTCTTGTAGATCACCTGCGCACCCATTCTGAAGAGCGACCATACGCATGTGACATATGCAAGTACACGTGTTGCAGTAGTAGCTACCTTGCCAAGCACAAGAAATGCCATTCTTCAGAGAAgcatcaatgcagccaatgtgactacaaAACACACCTTAAGTACAGGCTTGCAGCTCACCTGAGCATTCATTCTAGAGAGCGGCCATTCGCCTGTAATGTATGCACTTACAAGGCTACCTCCAGCAACAACCTTGCCCAGCACAAGAAACGCCAACATTCAGAGAAGAAgcatcaatgcagccaatgtgactacagaGCGAACAATAAGAGCAATCTTGTTGCTCACCTACGCACCCATTCTGGAGAGCGACCATACGCATGTGTCATATGCAAGTACACGTTTACCAATAGGAGCTACCTTGTTAGGCACAAGAAACTCCATTCTTCAGAGAAAAAgcatcaatgcagccaatgtgactacagaACACACATAAAGCACAGGTTCGTTGCTCACCTCCGCATTCATTCTGGAGAGCGGCCATTTGCCTGTAATGAGTGCACTCACAAGGCCACCTCCAGCCACAGCCTTGCCCAGCACAAGAAATTTCAACATTCAGCGAAGAAGTTCCAATGTAACCAATGTGAGTATATGGCGCACTACAAGTGCAAGCTTGTTGTTCACCTGCGCACCCATTCTGGAGAGCGGAAATTCGCCTGCAATCAATGCACTTACAAGGGTACCACCAGCCTCTACCTTGCCAGGCACAAGTACCTCCATTCTGCagagaagaagttccaatgcagccaatgtgactacagaGCTCACGAGAAGGCTCAACTTGTAGAACACCAGCGCATTCATTCTGGAGAGAGGCCATATGCATGCGACATTTGCCCGTACAGAAGTGCATTCAGGGGTGATATAGTCCGACACAAGCAGAAACATTCCAAGGTGAAGAAGTTGCAATGCAGTCAATGCGACTACAGAGTACACCTGAAGAGCGAACTTGTACGCCATCTGCGCACACATTCTGAGGAGCGACCATTTGCCTGCAATAAATGCTCTTACAGGGGTACCACCAGCTGCAACCTTGCCAGGCACGAGGCAGTTCATTCTGCAGAGAAGATGCATCAGTGCAACCAATGTGACTATAAATCACACAAGAGCAGGCTTATAGTCCACATGCGTACTCATTCCGGAGAGCAGCCATACGCATGTGACATTTGCAGTTTCAGGAGTGCCCACAGTGGTGCTCTGGTCCAGCACAAGCTTCTCCATTCATCggagaagaagttccaatgcagccaatgtgacttcaGAGCGTACACAGAGGGCAGTCTTAGAGTTCACGTGCGCAAGCATTCCGGGGCGCGGCCTTTTGCATGCAATGCTTGCACTTTCAAGTGTACCTCCTTCCACGACCTTGCCCAGCACAAGTATAGACTCCATTGCTCAGAGAAGAAGCTTCGATGCAGCAATTGTGACTACAGAGCGCACGAGAAGGGCAATCTTGCTATTCACGTGCTCACTCATTTTAATGAGGGGCCACATGCTTGTGACAAATGCTCGTTCACCGGTGCTACAAGCGGTGGCCTTAGAGTTCACAAGCGTAGCCACTTAAATGCGATGAAgttccaatgcagccaatgtgacttcaGTTCGCGATATAAGAATCACCTGGTTCGTCACCTGATCAAGCATTCTGGAGTGCGGCAATATGCATGCGACATTTGCACGTTCAAGACTGCGTACAAAAGAGCTCTTGTCACACACAAGCTAACACATTCAAACGTGAAGAGGTTCCattgcagccaatgtgactacgGATCAATCGGGAAGAAAGATCTTATAGCTCACCTGCGCAATCATTCTGGAGAGCTGCCATACGCATGCGATGTCTGCGAGTACAAGTGTAGTAGTAACAGCACCCTAACCCAACACAAGAAGATACACTTGAAACTCAAGCCCTATCAGTGTGACAAGTGTGCCTATTCAAGTGTACATAACTATAGCCTTACAAGACACAAGAAGACACACAAGTAG
Protein Sequence
MEPTVVRVKAEATEADTESAYPLPFTLDTELSSQSELIDTIKMEVEEQVPRSPPRFLLFADLPRRSSRTKSLKVSGQRSVDLPAIKPCYVSLTRWPTSNDKVSGQSSVDLPAMKPCYVSLTRWPTSNDKRANAAMTSQLWDSSNLTLKTEPEESGDYEAISIEHNITTATSIQPIDEYIMEQKPKISADTNICHIEGDAAFSRNDNDPEAGPSQNIDPLNQSLLHPKDFPFSCDVCTYKTTSSRNLAKHKIRQHSEKKHQCSQCDYRSNRKDNLVRHQRLHSGERSFACDVCTHESTSSRDLAQHKKLHYLEKKFQCAQCDYKTHRKDCLVDHLRTHSEERPYACDICKYTCCSSSYLAKHKKCHSSEKHQCSQCDYKTHLKYRLAAHLSIHSRERPFACNVCTYKATSSNNLAQHKKRQHSEKKHQCSQCDYRANNKSNLVAHLRTHSGERPYACVICKYTFTNRSYLVRHKKLHSSEKKHQCSQCDYRTHIKHRFVAHLRIHSGERPFACNECTHKATSSHSLAQHKKFQHSAKKFQCNQCEYMAHYKCKLVVHLRTHSGERKFACNQCTYKGTTSLYLARHKYLHSAEKKFQCSQCDYRAHEKAQLVEHQRIHSGERPYACDICPYRSAFRGDIVRHKQKHSKVKKLQCSQCDYRVHLKSELVRHLRTHSEERPFACNKCSYRGTTSCNLARHEAVHSAEKMHQCNQCDYKSHKSRLIVHMRTHSGEQPYACDICSFRSAHSGALVQHKLLHSSEKKFQCSQCDFRAYTEGSLRVHVRKHSGARPFACNACTFKCTSFHDLAQHKYRLHCSEKKLRCSNCDYRAHEKGNLAIHVLTHFNEGPHACDKCSFTGATSGGLRVHKRSHLNAMKFQCSQCDFSSRYKNHLVRHLIKHSGVRQYACDICTFKTAYKRALVTHKLTHSNVKRFHCSQCDYGSIGKKDLIAHLRNHSGELPYACDVCEYKCSSNSTLTQHKKIHLKLKPYQCDKCAYSSVHNYSLTRHKKTHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-