Basic Information

Insect: Leuctra nigra
Gene Symbol: -
Assembly: GCA_934046545.1
Location: CAKOHC010002836.1:32404-34026[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.08 5.7 8.8 0.2 1 23 213 236 213 236 0.96

2 10 0.022 1.6 10.5 3.1 1 23 242 265 242 265 0.97

3 10 0.00049 0.035 15.7 2.5 1 23 274 296 274 296 0.99

4 10 6.7e-06 0.00048 21.6 1.7 1 23 302 325 302 325 0.94

5 10 1.1e-06 7.6e-05 24.1 0.6 3 23 337 358 336 358 0.97

6 10 0.0027 0.19 13.4 2.0 1 23 364 386 364 386 0.97

7 10 1e-05 0.00073 21.0 1.5 1 23 392 414 392 414 0.99

8 10 5.3e-05 0.0038 18.8 0.2 1 23 420 442 420 442 0.96

9 10 1.7e-06 0.00012 23.4 2.0 1 23 448 470 448 470 0.96

10 10 8.3e-07 5.9e-05 24.5 0.7 1 23 475 497 475 497 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.08	5.7	8.8	0.2	1	23	213	236	213	236	0.96
2	10	0.022	1.6	10.5	3.1	1	23	242	265	242	265	0.97
3	10	0.00049	0.035	15.7	2.5	1	23	274	296	274	296	0.99
4	10	6.7e-06	0.00048	21.6	1.7	1	23	302	325	302	325	0.94
5	10	1.1e-06	7.6e-05	24.1	0.6	3	23	337	358	336	358	0.97
6	10	0.0027	0.19	13.4	2.0	1	23	364	386	364	386	0.97
7	10	1e-05	0.00073	21.0	1.5	1	23	392	414	392	414	0.99
8	10	5.3e-05	0.0038	18.8	0.2	1	23	420	442	420	442	0.96
9	10	1.7e-06	0.00012	23.4	2.0	1	23	448	470	448	470	0.96
10	10	8.3e-07	5.9e-05	24.5	0.7	1	23	475	497	475	497	0.98

Sequence Information

Coding Sequence: ATGAAGATTACTAATCCCGATATTATGAGCGTGAACGGCGGCATTGGGTCGAGCGTCCACGCCCCGCCCGTCTCTCTACTATTCCTTCCTGAGAATCAGGACGTGTTCCATGCATCGCTCGGCATCAAGTATGAGGTTCCTTCCCCGGAGCCGATTGATTCTGAAGACCTCCATTTCATCTACGAGTCAAACAAAGAATTCATCGTCTCCGAGCAAACGGTTGACTCCGACATCGAGGAAACGGTAAGCGATGATCGTACGGAACTCCGCGGGGCAATCTTTCACGAGATGACGGCGGTCGTTGTGGACACCAGCCATCCAGAAGTAATAATCATTGAAGACATCAACGAGTCCATACGTAAGGAAATCACTGAGAAACAGCTGGACAATAGTGATGCGAGTTGCACGGAAATTTCTAGCCTTTCCGCATCAAACTCGGGGGAAGATGTTAATTTGGAATCTGGTGATGGTTACGTTCCTAAAGAATTTAAGTTTGTGTCTGTTGACGAAGAAGAGGTTTTAGAAGAGTGCGAAGAGGCCGAGAAGAAGAATGATCTTTCTGAAGGTGACGCTCTGAATCTGGTAGATAACAGTTATCAAGAGGCTATCCAACATTGGCAGTTTATTAACGGCTCTTACAAGTGTTCTTTGTGTGAGAAGAGCACTCCGATCCAGTCTCGCATCGAGCTACACATCCTCAGAATTCACATGAACATAAAACCGTTCTCGTGCAACTTTTGCCGCCAGGGTTTTTGTTCGACTCGTTCTCTCATGGAACATGTGAACCGTATTCACGATCCGAGTTCATTGGACATGCAGTACAAGTGCACGGTATGTGGCAAACAATATCTCAACAAGTACAAATTCAGGATGCACATGAACGTCCACGAGAGGAAGATTCAGTTTAAGTGTCACGACTGCGGGAAAGGATTCTACTACAAATACAACATGCAGGTTCATATTGCTGGACAGCATGTTAAGATTAAAGAGGATGAAATGAAGAATATGTGCGAATATTGTGGCAAATCGTTTAAGAATGGCGGAACGTTACGAACGCACATGAGGAGCGTTCATCGTACCGGGCGTCAATACGCGTGCACGCTTTGCAGTCGGAAGTTCAGTTTCCAGAACAAGCTCGACAGCCACATGTCTCAGCACACGGGAGAGCGAGCGTTCCAGTGCGAGATCTGCTTGAAGTCGTTCCGTATCCGCGAGACGCTCCGTCGTCATCTACAGACGCACTTCGATCCCAAGCCTCACGCGTGTTCCATCTGCGGCCTGGCGTACGCGCAGAAGGACACGTTAGCCGAGCACATGTTGAAGCACCAGGGCGTTCGCAAGTACAACTGCAACCAGTGCGGGAAAACGTTTGCTCAAAAGTCCCATCTCGCGGCTCACAAGTTCGTGCATCAGGAGAAGAGTTTCGAATGTTCGGTTTGCGGAGCGAAATTCAATCGTAATGACAACATGAAGGCCCATATGAAGCGACATTTTAAAGATGTGATTGTGAAAAAGGAAAATGGTGTGAAGAAGGATAAAGCTCAAGATAAAAGTAATCTTCAAGATAAAAACAGTCCAAAAGTTACGAAGAATAACAACGTAAAGCGTAAAACAAAGAAATAG
Protein Sequence: MKITNPDIMSVNGGIGSSVHAPPVSLLFLPENQDVFHASLGIKYEVPSPEPIDSEDLHFIYESNKEFIVSEQTVDSDIEETVSDDRTELRGAIFHEMTAVVVDTSHPEVIIIEDINESIRKEITEKQLDNSDASCTEISSLSASNSGEDVNLESGDGYVPKEFKFVSVDEEEVLEECEEAEKKNDLSEGDALNLVDNSYQEAIQHWQFINGSYKCSLCEKSTPIQSRIELHILRIHMNIKPFSCNFCRQGFCSTRSLMEHVNRIHDPSSLDMQYKCTVCGKQYLNKYKFRMHMNVHERKIQFKCHDCGKGFYYKYNMQVHIAGQHVKIKEDEMKNMCEYCGKSFKNGGTLRTHMRSVHRTGRQYACTLCSRKFSFQNKLDSHMSQHTGERAFQCEICLKSFRIRETLRRHLQTHFDPKPHACSICGLAYAQKDTLAEHMLKHQGVRKYNCNQCGKTFAQKSHLAAHKFVHQEKSFECSVCGAKFNRNDNMKAHMKRHFKDVIVKKENGVKKDKAQDKSNLQDKNSPKVTKNNNVKRKTKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -