Lnig018550.1
Basic Information
- Insect
- Leuctra nigra
- Gene Symbol
- RTase
- Assembly
- GCA_934046545.1
- Location
- CAKOHC010001644.1:1-9430[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0001 0.0073 17.9 0.8 1 23 8 30 8 30 0.98 2 12 0.00098 0.07 14.8 1.7 1 23 44 66 44 66 0.96 3 12 3.6e-05 0.0026 19.3 0.8 1 23 72 94 72 94 0.99 4 12 1.2 84 5.1 7.0 1 23 100 123 100 123 0.95 5 12 2e-06 0.00014 23.2 0.1 1 23 129 151 129 151 0.98 6 12 0.0001 0.0073 17.9 4.2 1 23 156 178 156 178 0.99 7 12 1.4e-06 0.0001 23.7 0.7 2 23 186 208 185 208 0.96 8 12 6.8 4.9e+02 2.7 0.6 1 8 213 220 213 226 0.85 9 12 2.2 1.6e+02 4.2 0.1 10 23 243 256 241 256 0.90 10 12 5e-05 0.0035 18.9 0.8 1 23 262 284 262 284 0.98 11 12 6.2e-07 4.4e-05 24.9 5.4 1 23 290 312 290 312 0.98 12 12 0.00012 0.0084 17.7 1.7 1 23 318 340 318 340 0.96
Sequence Information
- Coding Sequence
- CGACCGCGCGTGCACTACCAACACACCTGCTCCATCTGCAACACGGCGTACGCAACGTATGAAGCTCTGACCAGCCACCTCAACACCCACGGTCGGCAGCGCAACATCGCATTTCTCGACCGCAGGCCTTTCCAGTGTGACATCTGCAAGAAGGTGTTCTTGGAGCCATCCCACCTGAAGAGCCACAAAGTGTCTCACTCCAGCGAGCGTCCCTACCAGTGTGGGGTGTGCAACAAGACGTTCAAGCGCAAGGCGATCCTCGTGAAGCACGCCAAGACGCACACAGGCATCAAGGAGCACGCCTGCTGCTACTGCAGCTACGCCACAGTGCATAAGACCAACCTCGAGTACCACAAGATGCGGCGCCACAGCCAGGCATTCGAGTTCACGTGCGACATTTGTGGGAAGCGATTCAAGGCGCCGGGCGATCTGAAGAGCCACATCGTGACGCACGAGGAGCGCCGGTTCAAGTGCATGGAGTGCGACAAGGCGTTCCACTTCAACCACCTGCTGGTGGCGCACCAGCGCACGCACAACCCCAACCGCTTCCGCCTCCAGTGCGAGCTCTGCGGCAAGAGCTACTCGCAGAAGTCCAGTCTCACCGACCACATCTCCAGATACCATCTCGGACACACCTACAAGTGTGACATATGCACCAAGAATAAGTCCTATATGCGTCTTCGACTTTCGCACGAGTTTATCCTGGTGTTCCGTCTGCTCCAGGTGGTGACAACTCCGGAGTCTTTGATCATCCACCGCCGCCGCCACACCGGCGAGAAACCCTTCGTCTGCGAGGTCTGCCACAAGCCGTTCATCTCCAAGAAGCTGCTGAGCGTGCATCGGCTGGTGCACACCGGTGACAAGCCTCACAAGTGTCAGGAGTGCGGCAAGTGTTTCTCCCAGAGGTCCACGCTCGTCGTCCACATGCGCTATCATTCGGGGCTGCGGCCGTACGCCTGTGAGCTCTGTCCTAAGTCCTTTGTCACAAAGACGCTGCTAACGGCGCATTGCAAGACACATTCCATGGACTGCCGTCCGATGACGATGACCTTCCCGAAATCAAGAGGATCAAGTTCTTGCTCTAACCACTTCATTGAAGCAGGGTTTGAGCAGCGCCTGAAGGTGGGAGCTGTGTTCGTGGATCTTACAGCTGCATATGACACAGTCTGGAGAAAAGGACTTGTATGTAAATTCTTGAAGGTCGTTAAGTGCAAGAAGATGACCCATTTCCTGAATATGATGCTTTCGGATAGATTGCTCCAGGTAGTGATGGGTGATAGTCGCAGTAAGTTGAGGAGATTAAACAATGGCCTCCTGCAAGGATCAGTCTTGGCGCCGCTATTATTCAATCTTTATATAGCGGACCTTCTGGAGACTTACTCGAGACGATTTGCGTATGCCGATGATCTGGCCATTGCCACGCAGCACATGTGTACAGAGACCATCGAGAGTACCCTTAGTGAAGATATGGAGACGTTaagcaaatattttaagatgtgGAGACTAACTCAGAGCGTGACAAAGACGGAGAGCAGTTACTTTCATCTAACTAACCAGCTGGCTACAACTCACCTCAAAGTCTTCCTTGACGGAAAACTTTTGCCGTTCAATCCTAGCCCGAAAATCTGGACATttctcaacagaatacgaaCAGGTCACGGTCGTTGCAACTATTTCCTGCACTTATGGGGCATGAGATCGTCGCCGGAGTGTGATTGTGGGGAGGAGGTACAGACCATGCTCCACATCAGAAGCGAGTGTCCTTTAAGAGCTTATGGTGGGAGTCAAGATGATTTCATTGAACCATCACAAGACGTGTTTCAGTGGCTACAAGATCTTGATATACATTTATag
- Protein Sequence
- RPRVHYQHTCSICNTAYATYEALTSHLNTHGRQRNIAFLDRRPFQCDICKKVFLEPSHLKSHKVSHSSERPYQCGVCNKTFKRKAILVKHAKTHTGIKEHACCYCSYATVHKTNLEYHKMRRHSQAFEFTCDICGKRFKAPGDLKSHIVTHEERRFKCMECDKAFHFNHLLVAHQRTHNPNRFRLQCELCGKSYSQKSSLTDHISRYHLGHTYKCDICTKNKSYMRLRLSHEFILVFRLLQVVTTPESLIIHRRRHTGEKPFVCEVCHKPFISKKLLSVHRLVHTGDKPHKCQECGKCFSQRSTLVVHMRYHSGLRPYACELCPKSFVTKTLLTAHCKTHSMDCRPMTMTFPKSRGSSSCSNHFIEAGFEQRLKVGAVFVDLTAAYDTVWRKGLVCKFLKVVKCKKMTHFLNMMLSDRLLQVVMGDSRSKLRRLNNGLLQGSVLAPLLFNLYIADLLETYSRRFAYADDLAIATQHMCTETIESTLSEDMETLSKYFKMWRLTQSVTKTESSYFHLTNQLATTHLKVFLDGKLLPFNPSPKIWTFLNRIRTGHGRCNYFLHLWGMRSSPECDCGEEVQTMLHIRSECPLRAYGGSQDDFIEPSQDVFQWLQDLDIHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -