Basic Information

Insect: Leuctra nigra
Gene Symbol: -
Assembly: GCA_934046545.1
Location: CAKOHC010000075.1:64273-69592[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 6.3e-06 0.00045 21.7 1.7 1 23 245 267 245 267 0.98

2 9 6e-08 4.3e-06 28.0 1.6 3 23 275 295 273 295 0.98

3 9 0.00047 0.033 15.8 0.4 1 23 301 323 301 323 0.98

4 9 2.6e-06 0.00018 22.9 1.5 1 23 329 351 329 351 0.99

5 9 4.5e-05 0.0032 19.0 1.7 2 23 520 541 519 541 0.96

6 9 5.9e-09 4.2e-07 31.2 1.6 1 23 547 569 547 569 0.98

7 9 0.00077 0.055 15.1 0.5 3 23 577 597 575 597 0.97

8 9 0.00014 0.01 17.4 1.4 1 23 603 625 603 625 0.99

9 9 0.029 2.1 10.2 0.9 1 23 631 655 631 655 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	6.3e-06	0.00045	21.7	1.7	1	23	245	267	245	267	0.98
2	9	6e-08	4.3e-06	28.0	1.6	3	23	275	295	273	295	0.98
3	9	0.00047	0.033	15.8	0.4	1	23	301	323	301	323	0.98
4	9	2.6e-06	0.00018	22.9	1.5	1	23	329	351	329	351	0.99
5	9	4.5e-05	0.0032	19.0	1.7	2	23	520	541	519	541	0.96
6	9	5.9e-09	4.2e-07	31.2	1.6	1	23	547	569	547	569	0.98
7	9	0.00077	0.055	15.1	0.5	3	23	577	597	575	597	0.97
8	9	0.00014	0.01	17.4	1.4	1	23	603	625	603	625	0.99
9	9	0.029	2.1	10.2	0.9	1	23	631	655	631	655	0.95

Sequence Information

Coding Sequence: ATGCACCGTGCACGTGAAGTCGGGGAGGGGGGACGATCTGGCAACGCCGCAGTCTGTCTCGCCGGTTTGGCTGGCCGGAGCGAGTCTACATTCGGCGGCGAGGCGGCGAGCATGATGGCTCTTGCATCTACGGGTGCAGCCCCGTACGTTAGTTTATATTATTCGATAGTGCAACGTGCGGCATCACGGTATTTTAAGGAATATTATAGGTCTGacactGGCGCTCCCTATGTGATCTATAAAGACGGCATGGATCGAACCCAGGGCCAAATAACGCCGGGCCAATGGGGTCCTGGGGCGCCACAGGACGGGGGCTATCCCCCCCAACAGCCCGGCTCGTCCTCGTCATCGGGCAGTCCCCAACAGGCGTGCGGACCCCCGGGTTCGGAACCGGACCAGcaacagagcatgacgtcacccGTCCCGTCCCCCTACCCACCCTCCCAGCAAGGGGAACCTCCCCAATCCCATCCCGTCGAAGAGGAGCAAGTGACGCCCCCCGATTCCGAACGCTTCCCGAGTAACCAAGAGTACTATGCACGCGGTCACCATCACATGCTGCCACCTGGCGGTTTCTCGGCGTTACACTACTTGAAACAGCCTCTGCTCACCTCGCTCGGGCCGATGGACCAGAACGGAGAGTATCCGCAGGACGGACGGTCGTCTGTGTTGCCAGACATCGTCCAGGCGCAAGGGAACAAGTCTCCGAGCAAGAACGGGGAGCTGCGTCTGTTCAAGTGTCTGACGTGCGGCAAAGACTTCAAGCAGAAGTCGACGCTGCTCCAACACGAGCGGATTCACACGGACTCGAGGCCGTACGGATGTCCGGAGTGCGGCAAACGGTTCAGACAACAGTCTCACTTAACTCAACACTTACGAATCCACGCCAACGAGAAACCGTACGCGTGCGTCTACTGCGAGCGTACGTTCCGCCAACGCGCCATCCTGAACCAACATCTGAGAATACATTCGGGTGAGAAGCCTTACCAGTGCCCGGAGTGCGGTAAACATTTCCGTCAGAAGGCAATTCTCAACCAACACGTGCGCACCCACCAAGGCGAGCATCCTATTATACACACGTCCACTCTCGGTAGCTACTTGACCACAATAGATAGCGTAGTGCGCTCCGTCGATGACGTTCAGAGCTCCCAGGCGCATTTGTGTTCGGTTTCTCTGCTGAACGATGGAGAGGGCGGTGACCAGGTGCAGGAGATGGTGACCGAGATAACGGAAAGTCCTAATGTCAGCCCGCACCTGGTATTCAAGAACGGCATGACGCCGTCCGTTTGGCCGCACGACGCCACCTATCCCGGAGATCCGGACAAGGACGACGCCGCCTCGACGTACGACGAGAACGGCGACCGCATCAACGGCCAGTGCTTCTCTCCGGACAACACCGTGGCGGGCCAGTATCCCGCGTACTTCAAGGACGCCAAGGGGATGAACCACAACGTGTTTGCCAACGGCGGCACCGGATTCCCGATGCAGTACAAGGGGAAGGGGTGTCTACCGGACGTCATCCAGCACGGGAGGAGCGCGGGAATGCCATTGTACGTTCGATGTCCTATCTGTCAGAAGGAATTCAAACAGAAGTCGACGCTGCTGCAGCATGGATGCATCCACATCGAGTCTCGGCCGTATCCGTGTCCCGAGTGCGGGAAGCGTTTCCGCCAGCAGTCGCACTTGACTCAGCACCTTCGGATTCACACCAACGAGAAGCCGTACGGCTGCGTCTACTGCGGAAGGAATTTCCGCCAGCGTACGATCTTAAACCAGCACATCCGGATACACACCGGGGAGAAACCGTACAAGTGCAGCCAGTGCGGCAAGGACTTCCGTCAGAAGGCGATCCTCGACCAGCACACCCGCACGCATCAGGGCGACCGGCCGTTCTGCTGTCCGATGCCCAACTGCCGGAGAAGATTCGCGACGGAGGTGGAGGTGAAGAAGCACATCGACAACCACATGAACCCGCACGCGGGGAAGGGGAGACGCAACACGCCCGAGAGCAAGCATCTCTTGACGCGAAGCATCCCGCCGACGGCCGTCATCAAGCCGGAACTCTACTTTCCGCAGTGTTACGGCCCGGCGGCGTTCAGCCACCAGGGCGCGCAGTTCCCGTCGACAAACGGGAACGCGTTCCCCAACAACAATCCCAACCCCATCAACCCCATCAACACGGACTTCAAGCCGTTTCCGTTGAACAACGCGCCGCAACAGATCCAGCCGCTCGCGCTGGCCGCGCCGACGGCTTGGCCGATCAATGCCAAATCATAA
Protein Sequence: MHRAREVGEGGRSGNAAVCLAGLAGRSESTFGGEAASMMALASTGAAPYVSLYYSIVQRAASRYFKEYYRSDTGAPYVIYKDGMDRTQGQITPGQWGPGAPQDGGYPPQQPGSSSSSGSPQQACGPPGSEPDQQQSMTSPVPSPYPPSQQGEPPQSHPVEEEQVTPPDSERFPSNQEYYARGHHHMLPPGGFSALHYLKQPLLTSLGPMDQNGEYPQDGRSSVLPDIVQAQGNKSPSKNGELRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCERTFRQRAILNQHLRIHSGEKPYQCPECGKHFRQKAILNQHVRTHQGEHPIIHTSTLGSYLTTIDSVVRSVDDVQSSQAHLCSVSLLNDGEGGDQVQEMVTEITESPNVSPHLVFKNGMTPSVWPHDATYPGDPDKDDAASTYDENGDRINGQCFSPDNTVAGQYPAYFKDAKGMNHNVFANGGTGFPMQYKGKGCLPDVIQHGRSAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCGRNFRQRTILNQHIRIHTGEKPYKCSQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEVEVKKHIDNHMNPHAGKGRRNTPESKHLLTRSIPPTAVIKPELYFPQCYGPAAFSHQGAQFPSTNGNAFPNNNPNPINPINTDFKPFPLNNAPQQIQPLALAAPTAWPINAKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -