Basic Information

Insect: Leuctra nigra
Gene Symbol: ECU03_0790
Assembly: GCA_934046545.1
Location: CAKOHC010001765.1:55312-57201[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.012 0.88 11.3 1.8 3 23 123 143 122 143 0.96

2 16 0.14 9.9 8.0 1.0 2 23 147 169 146 169 0.95

3 16 0.00016 0.011 17.3 0.9 3 23 181 202 180 202 0.95

4 16 0.21 15 7.5 0.3 2 23 208 229 207 229 0.96

5 16 9.1e-05 0.0065 18.0 2.2 3 20 237 254 235 255 0.93

6 16 0.0023 0.16 13.6 0.5 1 23 266 289 266 289 0.90

7 16 0.0036 0.26 13.0 1.2 1 23 299 320 299 320 0.97

8 16 0.0017 0.12 14.0 2.5 1 23 326 348 326 348 0.96

9 16 0.023 1.7 10.5 0.4 2 23 361 383 360 383 0.92

10 16 0.17 12 7.8 0.1 1 19 389 407 389 408 0.92

11 16 2.2e-05 0.0016 20.0 0.6 1 23 429 452 429 452 0.98

12 16 0.015 1 11.1 0.1 3 23 476 497 475 497 0.91

13 16 0.019 1.3 10.8 0.6 1 23 509 532 509 532 0.96

14 16 6.7e-05 0.0048 18.4 3.2 3 23 545 565 543 565 0.96

15 16 2.5e-05 0.0018 19.8 1.9 3 23 572 592 570 592 0.97

16 16 0.0002 0.014 16.9 2.0 1 23 598 621 598 622 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.012	0.88	11.3	1.8	3	23	123	143	122	143	0.96
2	16	0.14	9.9	8.0	1.0	2	23	147	169	146	169	0.95
3	16	0.00016	0.011	17.3	0.9	3	23	181	202	180	202	0.95
4	16	0.21	15	7.5	0.3	2	23	208	229	207	229	0.96
5	16	9.1e-05	0.0065	18.0	2.2	3	20	237	254	235	255	0.93
6	16	0.0023	0.16	13.6	0.5	1	23	266	289	266	289	0.90
7	16	0.0036	0.26	13.0	1.2	1	23	299	320	299	320	0.97
8	16	0.0017	0.12	14.0	2.5	1	23	326	348	326	348	0.96
9	16	0.023	1.7	10.5	0.4	2	23	361	383	360	383	0.92
10	16	0.17	12	7.8	0.1	1	19	389	407	389	408	0.92
11	16	2.2e-05	0.0016	20.0	0.6	1	23	429	452	429	452	0.98
12	16	0.015	1	11.1	0.1	3	23	476	497	475	497	0.91
13	16	0.019	1.3	10.8	0.6	1	23	509	532	509	532	0.96
14	16	6.7e-05	0.0048	18.4	3.2	3	23	545	565	543	565	0.96
15	16	2.5e-05	0.0018	19.8	1.9	3	23	572	592	570	592	0.97
16	16	0.0002	0.014	16.9	2.0	1	23	598	621	598	622	0.97

Sequence Information

Coding Sequence: ATGAATTCTACAACGGTTGAGAGTTCTCTTCATCAACCAAACGAAACTGTTCTGGATCGCTTCTTCGCAGTAATTGTCAATGATGACCCTGCAAGTCGTCCTGAAGTATCACGTGTTTCACTGGACTCTCCACTCGATAGGAACTGTGAATACTTGACGGAGGTCTGTGAGAGTTCAATGGAATTGTCTTCAAGCAGAGCAGATATTCCCCCTGGGCCAAGTGTCGTAAGAAGTCAAGATGTGCCTCAAGTAAAGAATCCTCCATGCCAAGTAACAATTGATGACGTATCATGTGCCAGACAAGAAGAATGCAAACAAAATGAATTAATTCCAAAACTGAAAAAAATACCTGTGTCCTCTAAGAACTGTAGATTCTGTACCAAAACATTTCCATCGGAATCTAAATTAGGTCGACACGAAAAGCAACATCTCAATAATAAATGTAAACTATGTGACGATCTCTTCAACAATGCAAAAGACCTGCAATCACATAACAGAGAGTTCCATTCAGTTGAATCAGAGAAACCGTCACTAAAACTTTGTTTCACTTGTGGTAAAACGTTTGCCACTTCTGTACAACTCATCAGACATAACAATTCATTTCACAAAGCCAAGGATCTATCTTGTGATTTGTGCGATTACAAAACTGCTTTGAAAGGTAGACTGAAGGGGCACTTGTTGACACACAGCGGCGAGAAACCTCATCTCTGTGAGACGTGTGGCAAGAGTTTCAAGTCTCTTTCCACGCTACGACGTCATCACGGATGCTCTCATACCTCAGCAGAGCCACCTCGTCACATTTGTCCGACGTGCGGCGAGTCATTTCGATCAGTCGTCTTCTTGAACAACCACGAGTTCATAATGCACGGCAAGGACCTCGTGAGTGACAGGATACATGTGTGTCCTGTGTGCGGACTGCGATGCAAGCCGTCCCTTCTCTCGGATCATATGAACAGTCACACCGGCTCCCTGCCTTACACTTGCGAGCTCTGTCCGAAGATGTATTCTTCTCTGAAATGCCTTCTCCGACACAAGTTAGACCACAGGAAGAGAGATTTACCgaaccaaaaaaccaaatgcaAATGCAATTTATGTGACGATGAGTTTATATCATATGCAGCTCTTAATAAACACCAGATTGCAGATCATAAAGCTGATAAAAGCTTTGTTTGTAATATTTGCGAAAGGCGATTTTTAAGAAGAGTTGGACTGATGGTTCACAGTTGGAAATGCCGCCAAGACAAAGTCCTGCATGTCGATGACAAAGACGTTCCTCGCGCCATGTTTAAGTGTGATGACTGCGGGAAACTGACCAAGACGAAGACTCTTCTTATCCAGCATATCAAGTCAGCTCATGGAAGTAACATTCGTGATCAAAGGACCTCAGCACCTCGTCGCGGACCCCCGGGCCCTTTCACTGCCCCATGCACCGTGTGCAACAGAATGTACGCTACTACAGAGACTCTGTGGATTCATCAAGTCCTTGATCACAGAGTTTATAGCGGCATAGTTGACGAGACACTATTTTCTTGCCCGTTGTGCACGAAGCGTTACAACACAGATATTGCCATGAAAATGCACGCCCGCTCCAGACATTTGACGCGGAAGGCGCTGACGCCGGAAGAGAGTATTTGCTCACATTGTGGTAAAATCTTTCAAAACAAACATAGTTTAAGTAGACATTTGATAGTACATGGCGTAAAGAAGATTGCGTGCACAGTATGTGATATGAAATTTCGCACTGCTTTTCATTTGAGAAGTCATATGACGACACACACTGGCGAACGTCCTTATAAGTGCAAGGTGTGCGAGCAATCATTTGCTCAGTCTGGGACCAGGAACCAACACATGCAGAGTATACATCATGTGCCAGGACCCTCCAAGAAGTAG
Protein Sequence: MNSTTVESSLHQPNETVLDRFFAVIVNDDPASRPEVSRVSLDSPLDRNCEYLTEVCESSMELSSSRADIPPGPSVVRSQDVPQVKNPPCQVTIDDVSCARQEECKQNELIPKLKKIPVSSKNCRFCTKTFPSESKLGRHEKQHLNNKCKLCDDLFNNAKDLQSHNREFHSVESEKPSLKLCFTCGKTFATSVQLIRHNNSFHKAKDLSCDLCDYKTALKGRLKGHLLTHSGEKPHLCETCGKSFKSLSTLRRHHGCSHTSAEPPRHICPTCGESFRSVVFLNNHEFIMHGKDLVSDRIHVCPVCGLRCKPSLLSDHMNSHTGSLPYTCELCPKMYSSLKCLLRHKLDHRKRDLPNQKTKCKCNLCDDEFISYAALNKHQIADHKADKSFVCNICERRFLRRVGLMVHSWKCRQDKVLHVDDKDVPRAMFKCDDCGKLTKTKTLLIQHIKSAHGSNIRDQRTSAPRRGPPGPFTAPCTVCNRMYATTETLWIHQVLDHRVYSGIVDETLFSCPLCTKRYNTDIAMKMHARSRHLTRKALTPEESICSHCGKIFQNKHSLSRHLIVHGVKKIACTVCDMKFRTAFHLRSHMTTHTGERPYKCKVCEQSFAQSGTRNQHMQSIHHVPGPSKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -